mRNA_H-elongata_contig88931.16401.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.040e-14 Identity = 52/129 (40.31%), Postives = 61/129 (47.29%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQD--QEGGQ----------------------------------------------------GRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGA 230
+VLRRT+ DR+SQSALLLG+ G+GKSLVLD VL+ QE R PFR VYLNG AQ +D VAMRE+VQQLG+TGA
Sbjct: 61 RVLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLEKAKGATAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPFRAVYLNGAAQENDGVAMREIVQQLGITGA 189
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A8D2MTG0_ZONAL (Origin recognition complex subunit 4 n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MTG0_ZONAL) HSP 1 Score: 70.9 bits (172), Expect = 7.030e-14 Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
++LRRT + ES SALL+G RGSGKS +L+ VL+D + R V+LNG QT+DSVA++E+ +QL + GD
Sbjct: 24 ELLRRTTVHGESNSALLIGPRGSGKSALLNHVLKDLREMEQVRENLLEVHLNGLLQTNDSVALKEITRQLQLENVVGD 101
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A8D2MYH9_ZONAL (Origin recognition complex subunit 4 n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MYH9_ZONAL) HSP 1 Score: 70.9 bits (172), Expect = 1.720e-12 Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
++LRRT + ES SALL+G RGSGKS +L+ VL+D + R V+LNG QT+DSVA++E+ +QL + GD
Sbjct: 24 ELLRRTTVHGESNSALLIGPRGSGKSALLNHVLKDLREMEQVRENLLEVHLNGLLQTNDSVALKEITRQLQLENVVGD 101
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI0005283CC6 (origin recognition complex subunit 4 n=1 Tax=Eurypyga helias TaxID=54383 RepID=UPI0005283CC6) HSP 1 Score: 67.8 bits (164), Expect = 5.490e-12 Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
++L+RT+I ES SAL++G RGSGK+ +L+ VL++ E + R V+LNG QT+D VA++E+ +QL + GD
Sbjct: 54 ELLKRTMIHGESNSALIIGPRGSGKTALLNHVLKELEKMKQVRENLLEVHLNGLLQTNDKVALKEITRQLNLENVVGD 131
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI000522A305 (origin recognition complex subunit 4 n=1 Tax=Leptosomus discolor TaxID=188344 RepID=UPI000522A305) HSP 1 Score: 67.0 bits (162), Expect = 1.080e-11 Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
++L+RT + ES SAL++G RGSGK+ +L+ VL++ G + R V+LNG QT+D VA++E+ +QL + GD
Sbjct: 54 ELLKRTAVHGESNSALIIGPRGSGKTALLNHVLKELMGMKQLRENLLQVHLNGLLQTNDKVALKEITRQLHLENVVGD 131
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI0006D50CCE (origin recognition complex subunit 4 isoform X1 n=2 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D50CCE) HSP 1 Score: 68.6 bits (166), Expect = 1.300e-11 Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 3
Query: 9 VLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
+L+RTV + ES SAL++G RG GKS +LD VL + + + VV LNG QTDD++A+R +++QL +T GD
Sbjct: 41 LLKRTVSNGESDSALIVGPRGCGKSTLLDSVLNELSNSESNE--YLVVKLNGLVQTDDNLALRTIIEQLHITELDGD 115
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A1Y1XYX6_9FUNG (Origin recognition complex subunit 4 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XYX6_9FUNG) HSP 1 Score: 68.6 bits (166), Expect = 1.300e-11 Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 3
Query: 9 VLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQD--QEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGV 221
+L RTV ES SALL+G RGSGKS++++RVLQ+ Q+ + F V+LNG QTDD +A++E+++QL +
Sbjct: 44 LLERTVSQGESNSALLIGQRGSGKSMLVNRVLQNLTQKYHVDNKKDFYQVHLNGLVQTDDRIALKEIIRQLSL 116
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI00051BCE93 (origin recognition complex subunit 4 n=1 Tax=Cuculus canorus TaxID=55661 RepID=UPI00051BCE93) HSP 1 Score: 68.2 bits (165), Expect = 1.750e-11 Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
++L+RT+I ES SALL+G RGSGK+++L+ L + G + R V+LNG QT+D VA++E+ +QL + GD
Sbjct: 49 ELLKRTIIHGESNSALLIGPRGSGKTVLLNHALNELRGMKQVRGNLLEVHLNGLLQTNDKVALKEITRQLQLENVVGD 126
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A8C0IV31_CHEAB (Uncharacterized protein n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0IV31_CHEAB) HSP 1 Score: 64.7 bits (156), Expect = 2.590e-11 Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
++L+RT I ES SAL++G RGSGK+++L+ VL++ + R V+LNG QT+D +A++E+ +QL + GD
Sbjct: 49 ELLKRTTIHGESNSALIIGPRGSGKTMLLNHVLKELMEVKQVRENLLQVHLNGLLQTNDKIALKEITRQLQMENVVGD 126
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI0004F0E510 (origin recognition complex subunit 4 n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=UPI0004F0E510) HSP 1 Score: 67.0 bits (162), Expect = 4.580e-11 Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 3
Query: 6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
++L+RT++ ES SAL++G RGSGK+++L VL+D + + R V+LNG QT+D VA++E+ +QL + GD
Sbjct: 49 ELLKRTILHGESNSALIIGPRGSGKTVLLKHVLKDLQEMKQVRENLLEVHLNGLLQTNDRVALKEITRQLKLENVVGD 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88931.16401.1 >prot_H-elongata_contig88931.16401.1 ID=prot_H-elongata_contig88931.16401.1|Name=mRNA_H-elongata_contig88931.16401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp FPRCYVEPSSIARVRAPCCLGPGVQESHSCLTGFSRIRKAGRGVVLPFGWback to top mRNA from alignment at H-elongata_contig88931:608..937- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88931.16401.1 ID=mRNA_H-elongata_contig88931.16401.1|Name=mRNA_H-elongata_contig88931.16401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig88931:608..937- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88931:608..937- >mRNA_H-elongata_contig88931.16401.1 ID=mRNA_H-elongata_contig88931.16401.1|Name=mRNA_H-elongata_contig88931.16401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig88931:608..937- (Himanthalia elongata Himel1 dioecious)back to top |