mRNA_H-elongata_contig121426.1640.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121426.1640.1
Unique NamemRNA_H-elongata_contig121426.1640.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 2.350e-49
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 FAFHFPLSQELWEAWIEDRRGSGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKDELEDAEETGASDAEVSRKLER 387
            F+  FPL  ELW+ WI+DRR +GGED  E+ILALYRRAF DYQCAKLWPGYLETLE SLD       +DD  GV+ MREAFEEAL RVGVHP++GGAVWR+ LRFE +ELEDAEE G  D E+++  +R
Sbjct:   65 FSERFPLGPELWQEWIDDRRAAGGEDGAEDILALYRRAFADYQCAKLWPGYLETLEASLD-------EDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGVGDGEIAKARDR 186          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A835Z6Q0_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.370e-30
Identity = 67/129 (51.94%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 FAFHFPLSQELWEAWIEDRRGSGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTM-----REAFEEALGRVGVHPIVGGAVWRAYLRFEKDELEDAEETGASDAEVS 372
            FA  FPLS ELW  WI D +  GG  A  ++ ALY RAF+DYQCA LWPGYLE L+E  D   +  A + G     +     R+A E AL  VGVHP VG  VW AY  FE+DEL+D EETGAS+ E++
Sbjct:   88 FAKAFPLSPELWADWIADEKAGGGNAA--DVKALYERAFKDYQCAALWPGYLELLDEMSDNEDLA-AMEQGQAPEELSETELRQAHEAALTAVGVHPTVGPQVWAAYRTFEQDELQDLEETGASEDELA 213          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A8J4AXY8_9CHLO (RRM domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXY8_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 2.500e-12
Identity = 53/132 (40.15%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQD-DGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKD-ELEDAEETGASDAEVSRKLER 387
            A  FPLS+ELW AWI D  G+  G D    +L L RRA   DY    +W  YLE L   LD +     +D + DGVN  R   EEA+   G+H   G ++W  Y +FE + E + A E G + A  SR+ +R
Sbjct:  114 AARFPLSEELWLAWINDELGAVSGPDDVVWLLGLMRRAATRDYLAPAVWELYLE-LAHDLDPA----VRDLEPDGVNRYRALCEEAVAAGGLHLATGHSLWGKYRKFELELETKLAAEKGGTTAAASRQQDR 240          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: D8U4W3_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4W3_VOLCA)

HSP 1 Score: 64.3 bits (155), Expect = 3.080e-9
Identity = 47/131 (35.88%), Postives = 62/131 (47.33%), Query Frame = 1
Query:    4 AFHFPLSQELWEAWIEDRRG--SGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQD-DGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKDELEDAEETGASDAEVSRKLER 387
            A  FPLS+ELW AWI D     SG ED    +  L R A  DY    +W  YLE   + LD +     +D + +GV   R   EEAL   G+H   G  +W  Y  FE     +A   G + A  +R+ +R
Sbjct:  112 AARFPLSEELWLAWINDELSAVSGPEDLAWLLGLLRRAATRDYLAPAVWELYLEVAHD-LDPA----VRDLEPEGVERYRAICEEALAAAGLHLAAGHRLWSKYRTFEL--AVEARAAGGTSAAAARQQDR 235          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A8IYA5_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IYA5_CHLRE)

HSP 1 Score: 62.8 bits (151), Expect = 1.010e-8
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 1
Query:    4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
            A  FPLS+ELW AW+ D   +  G D    +L+L RRA   DY    +W  YLE   + LD       +  G+G +  R   EEAL   G+H   G  +W  Y ++E
Sbjct:   89 AAKFPLSEELWLAWVNDELAAVNGPDDVAGLLSLLRRAAARDYLAPGVWDLYLEVAHD-LDPEV---KEHSGEGADRYRALCEEALAAAGLHLAEGHKLWAKYRKYE 191          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A2K3D6G9_CHLRE (RRM domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D6G9_CHLRE)

HSP 1 Score: 62.8 bits (151), Expect = 1.050e-8
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 1
Query:    4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
            A  FPLS+ELW AW+ D   +  G D    +L+L RRA   DY    +W  YLE   + LD       +  G+G +  R   EEAL   G+H   G  +W  Y ++E
Sbjct:  111 AAKFPLSEELWLAWVNDELAAVNGPDDVAGLLSLLRRAAARDYLAPGVWDLYLEVAHD-LDPEV---KEHSGEGADRYRALCEEALAAAGLHLAEGHKLWAKYRKYE 213          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A8J4G5D8_9CHLO (RRM domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G5D8_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-8
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    4 AFHFPLSQELWEAWIEDRRGS-GGEDAHEEILALYRRAF-EDYQCAKLWPGYLETLEESLDVSCVCRAQD-DGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEKD-ELEDAEETGASDAEVSRKLER 387
            A  FPLS+ELW AWI D   +  G D    +L L RRA   DY    +W  YLE   + LD +     +D + +GV   R   EEA+   G+H   G  +W  Y ++E + E + + E G + A  +R+ +R
Sbjct:  117 AARFPLSEELWLAWINDELAAVSGPDDVVWLLGLMRRAATRDYLAPAVWELYLEVAHD-LDPA----VRDLEPEGVERYRALCEEAVAAGGLHLAAGHRLWEKYRKYELEVETKLSAEKGGATAAAARQQDR 243          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A835W1K2_CHLIN (RRM domain-containing protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W1K2_CHLIN)

HSP 1 Score: 61.6 bits (148), Expect = 2.660e-8
Identity = 37/107 (34.58%), Postives = 50/107 (46.73%), Query Frame = 1
Query:    4 AFHFPLSQELWEAWIEDRRGS--GGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
            A  FPLS+ELW AW+ D   +  G ED    +  L R A  DY    +W  YLE   + LD       +   +G +  R   EEAL   G+H   G  +W  Y ++E
Sbjct:  110 AAKFPLSEELWLAWVNDELAAVNGPEDVASLLSLLRRAATSDYLAPGVWDLYLEVAHD-LDPEV---EEHSAEGADRYRALCEEALAAAGLHLAEGHKLWAKYRKYE 212          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: A0A158N9L6_ATTCE (Uncharacterized protein n=11 Tax=Attini TaxID=143999 RepID=A0A158N9L6_ATTCE)

HSP 1 Score: 61.2 bits (147), Expect = 3.600e-8
Identity = 34/103 (33.01%), Postives = 51/103 (49.51%), Query Frame = 1
Query:   13 FPLSQELWEAWIEDR-RGSGGEDAHEEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFE 318
            +PLS ELW AWI D  + +  +D   E++ L  RA +DY   ++W  YL+       +  +      G     +R+ FE AL  VG+H   G  +W AY  +E
Sbjct:  103 YPLSPELWLAWISDEIKLATTDDQKTEVIKLCERAIQDYVSVEVWLEYLQ-----FSIGYI------GKDEEKVRQLFERALTVVGMHVTKGAIIWEAYREYE 194          
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Match: UPI0008F98E71 (squamous cell carcinoma antigen recognized by T-cells 3 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F98E71)

HSP 1 Score: 61.2 bits (147), Expect = 3.610e-8
Identity = 35/105 (33.33%), Postives = 49/105 (46.67%), Query Frame = 1
Query:   10 HFPLSQELWEAWIEDRRGSGGEDAH-EEILALYRRAFEDYQCAKLWPGYLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWRAYLRFEK 321
            +FPL+ ELW AW+ D       D   E++ +L+ RA EDY   +LW  Y+      +            +G   +RE  E AL   G+H   G  +W AY  FEK
Sbjct:   94 YFPLTPELWLAWLRDEIKLASTDQESEKLFSLFERAVEDYLSIELWGEYIHFSIGKM---------GSENGEEKVREIAERALTAGGLHVAKGVLLWEAYREFEK 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121426.1640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LJP0_ECTSI2.350e-4965.89Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A835Z6Q0_9STRA2.370e-3051.94RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8J4AXY8_9CHLO2.500e-1240.15RRM domain-containing protein n=2 Tax=Volvox afric... [more]
D8U4W3_VOLCA3.080e-935.88RRM domain-containing protein n=1 Tax=Volvox carte... [more]
A8IYA5_CHLRE1.010e-836.45Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A2K3D6G9_CHLRE1.050e-836.45RRM domain-containing protein n=2 Tax=Chlamydomona... [more]
A0A8J4G5D8_9CHLO1.060e-834.85RRM domain-containing protein n=2 Tax=Volvox retic... [more]
A0A835W1K2_CHLIN2.660e-834.58RRM domain-containing protein n=2 Tax=Chlamydomona... [more]
A0A158N9L6_ATTCE3.600e-833.01Uncharacterized protein n=11 Tax=Attini TaxID=1439... [more]
UPI0008F98E713.610e-833.33squamous cell carcinoma antigen recognized by T-ce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121426contigH-elongata_contig121426:507..1544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog2880.D8LJP0
EggNOG free text desc.positive regulation of histone deubiquitination
EggNOG OGsKOG0128@1,KOG0128@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929714.3083766-CDS-H-elongata_contig121426:506..7101622929714.3083766-CDS-H-elongata_contig121426:506..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121426 507..710 +
1691679129.354974-CDS-H-elongata_contig121426:506..7101691679129.354974-CDS-H-elongata_contig121426:506..710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121426 507..710 +
1622929714.320936-CDS-H-elongata_contig121426:1322..15441622929714.320936-CDS-H-elongata_contig121426:1322..1544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121426 1323..1544 +
1691679129.3642092-CDS-H-elongata_contig121426:1322..15441691679129.3642092-CDS-H-elongata_contig121426:1322..1544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121426 1323..1544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121426.1640.1prot_H-elongata_contig121426.1640.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121426 507..1544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121426.1640.1

>prot_H-elongata_contig121426.1640.1 ID=prot_H-elongata_contig121426.1640.1|Name=mRNA_H-elongata_contig121426.1640.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
FAFHFPLSQELWEAWIEDRRGSGGEDAHEEILALYRRAFEDYQCAKLWPG
YLETLEESLDVSCVCRAQDDGDGVNTMREAFEEALGRVGVHPIVGGAVWR
AYLRFEKDELEDAEETGASDAEVSRKLERRVESCPVSSLPP*
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mRNA from alignment at H-elongata_contig121426:507..1544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121426.1640.1 ID=mRNA_H-elongata_contig121426.1640.1|Name=mRNA_H-elongata_contig121426.1640.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-elongata_contig121426:507..1544+ (Himanthalia elongata Himel1 dioecious)
TTCGCGTTCCACTTCCCTCTTAGCCAGGAGCTCTGGGAAGCATGGATCGA GGATAGAAGGGGTTCGGGCGGGGAGGATGCCCACGAGGAGATACTGGCGC TCTACAGACGAGCCTTCGAAGACTATCAGTGTGCCAAGCTGTGGCCGGGT TACCTCGAAACTCTCGAGGAGTCCCTCGACGTGAGTTGCGTGTGTCGTGC ACAAGTACGTGCGGTGTGTGCGTTGCAGTGCGGGCGGCGTCGTCCTCTTT AGCCAATTGATTGCCTGCGGCTGCCGTCTTTGATGTGTATAACTGTAAAT GTGTATCGGTACACCATATGTTGCCTGCTCTTGGCCATGATGCATACCCT ACTGTACGTGTGATCGTTGTTATTACTGCCGTTGGTATTTTTTCGTCGCC TCCACCCCCGCCTTTTACGGTATCCCGTCGAAGCGTTGAGTGTTCCGCGG AACATGCTCGGCGAAAGACACGGCGGGGAGGGAAGGCGAAGAGAAGGGGG GCGGGGGGGGGGGGCGCGTACGGTTTTCCCCCCCTATGATCCCGCATTCC GTTTTCCGTGTTCCGTGAACTACACTCCACAATTCGTGTTCCACTCTTAA CATTCCAAGTCTCACGCTTCACGTCCCACGTTATCCCGCATTCCTTGTTT TCACCATTTCACGTTCCATTTTCAGCACGATCCGCACTCCCCCCTTCCAA TTCATTCTGACCTCAAGCCTGATCTCCGTCGCTTGTGCCTTTCGTTGATT GCTTTACTTGGTCTGATTATATCGCCCTTCCATTTCCTTCCATGCCCTTT CATTCCCTCGAAGGAGGATGACGGTGACGGGGTCAATACTATGCGAGAGG CGTTCGAGGAGGCCCTGGGGAGGGTGGGGGTGCACCCAATCGTTGGCGGG GCGGTCTGGCGAGCGTACTTGAGGTTTGAAAAGGACGAGCTCGAGGACGC GGAAGAGACCGGCGCGAGCGACGCTGAGGTTTCCAGAAAGTTGGAAAGGC GAGTCGAGTCCTGTCCAGTCTCGAGTCTTCCCCCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig121426:507..1544+

>mRNA_H-elongata_contig121426.1640.1 ID=mRNA_H-elongata_contig121426.1640.1|Name=mRNA_H-elongata_contig121426.1640.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig121426:507..1544+ (Himanthalia elongata Himel1 dioecious)
TTCGCGTTCCACTTCCCTCTTAGCCAGGAGCTCTGGGAAGCATGGATCGA
GGATAGAAGGGGTTCGGGCGGGGAGGATGCCCACGAGGAGATACTGGCGC
TCTACAGACGAGCCTTCGAAGACTATCAGTGTGCCAAGCTGTGGCCGGGT
TACCTCGAAACTCTCGAGGAGTCCCTCGACGTGAGTTGCGTGTGTCGTGC
ACAATTCGCGTTCCACTTCCCTCTTAGCCAGGAGCTCTGGGAAGCATGGA
TCGAGGATAGAAGGGGTTCGGGCGGGGAGGATGCCCACGAGGAGATACTG
GCGCTCTACAGACGAGCCTTCGAAGACTATCAGTGTGCCAAGCTGTGGCC
GGGTTACCTCGAAACTCTCGAGGAGTCCCTCGACGTGAGTTGCGTGTGTC
GTGCACAAGATGACGGTGACGGGGTCAATACTATGCGAGAGGCGTTCGAG
GAGGCCCTGGGGAGGGTGGGGGTGCACCCAATCGTTGGCGGGGCGGTCTG
GCGAGCGTACTTGAGGTTTGAAAAGGACGAGCTCGAGGACGCGGAAGAGA
CCGGCGCGAGCGACGCTGAGGTTTCCAGAAAGTTGGAAAGGCGAGTCGAG
TCCTGTCCAGTCTCGAGTCTTCCCCCCTAAGATGACGGTGACGGGGTCAA
TACTATGCGAGAGGCGTTCGAGGAGGCCCTGGGGAGGGTGGGGGTGCACC
CAATCGTTGGCGGGGCGGTCTGGCGAGCGTACTTGAGGTTTGAAAAGGAC
GAGCTCGAGGACGCGGAAGAGACCGGCGCGAGCGACGCTGAGGTTTCCAG
AAAGTTGGAAAGGCGAGTCGAGTCCTGTCCAGTCTCGAGTCTTCCCCCCT
AA
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