mRNA_H-elongata_contig88918.16400.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88918.16400.1
Unique NamemRNA_H-elongata_contig88918.16400.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A6H5L4S6_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4S6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.510e-22
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    2 EWLGGFQEGGGVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            EWLGGF+EGG  +  +++G+ VDSFD I S+ME +  F LE+R  MPFLIRE+AR+FQWGCSDGT+WRR+
Sbjct:  287 EWLGGFREGG--DAGKQEGEYVDSFDRIRSIMEADDAFGLERRCSMPFLIREHARKFQWGCSDGTVWRRK 354          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A2D4BLZ6_PYTIN (Methyltransf_11 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLZ6_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 6.150e-10
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    2 EWLGGFQEGGGVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            +W+GG  +        + G+ V SFD +  L+E   HF+L KR    F+IRE+AR++QWG SDGT WRR+
Sbjct:  216 KWIGGVVD--------KDGQPVQSFDVVAKLLE--PHFELVKREDYLFMIREHARKYQWGVSDGTFWRRK 275          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A835WP74_9CHLO (Methyltransf_11 domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WP74_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 6.990e-9
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    2 EWLGGFQEGGGVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ*PTA 223
            +WLGG+ +          GK V ++DTI + +  +  F+L     +PFLIRE+AR+FQWGCS+  +W+R+  TA
Sbjct:  246 KWLGGYYK---------DGKPVRTYDTICAAL--SPDFELVASSDVPFLIREHARKFQWGCSNALVWKRKGRTA 308          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A836C2Q9_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C2Q9_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 7.040e-9
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 2
Query:    2 EWLGGFQEGGGVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            +WLGG+ +          GK V + DT+L+L+  +  F L     +PFLIRE+AR+FQWGCS   +WRR+
Sbjct:  248 KWLGGYYK---------DGKPVRTHDTLLALL--SPDFDLVASEDVPFLIREHARKFQWGCSQALVWRRK 306          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A5D6XU92_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XU92_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.110e-8
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 2
Query:   53 KGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            +G  VDSF  +   + E  HF+L KR   PF+IRE+AR+FQ+G SDGT W+R+
Sbjct:  221 QGAPVDSFSVVEKYLSE--HFELVKRQDYPFMIREHARKFQYGVSDGTFWKRK 271          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: K3X4G4_GLOUD (Methyltransf_11 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4G4_GLOUD)

HSP 1 Score: 57.8 bits (138), Expect = 5.730e-8
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 2
Query:   32 GVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            G    E  G+ VDSF  I   + ++  F L KR   PF+IRE+AR++QWG SDGT W+R+
Sbjct:  218 GARVDEATGQPVDSFSVIEKHLSKD--FTLVKRQDYPFMIREHARKYQWGVSDGTFWQRK 275          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A250XJL9_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XJL9_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-7
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 2
Query:    2 EWLGGFQEGGGVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            +W+GG+ +          GK V +  ++  ++ ++  F L  R  MPFLIRE+AR+FQWGCS+  +WRR+
Sbjct:  240 KWIGGYNK---------DGKPVYTASSMTEILSKD--FDLIAREDMPFLIREHARKFQWGCSNAMVWRRK 298          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A2J8ABM2_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ABM2_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.540e-6
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 2
Query:    2 EWLGGFQEGGGVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            +WLGG+ +          G+ V + DTI +++  +  F L      PFLIRE+AR+FQWGCS   +W+ +
Sbjct:  244 KWLGGYYK---------DGQAVRTADTIAAVL--SPDFDLVAEQDCPFLIREHARKFQWGCSHAVVWKHK 302          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A8J4FDP1_9CHLO (Methyltransf_12 domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4FDP1_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 5.500e-6
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 2
Query:    2 EWLGGFQEGGGVNGSEEKGKVVDSFDTILSLMEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            +WLGG+ +          GK V + + +  ++  +  F L  +  +PFLIRE+AR+FQWGCS   +W+R+
Sbjct:  248 KWLGGYYK---------DGKPVRTAEMVTCVL--SPDFDLVAQEDVPFLIREHARKFQWGCSQAMVWKRK 306          
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Match: A0A7S0UWG5_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UWG5_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 5.100e-5
Identity = 18/31 (58.06%), Postives = 27/31 (87.10%), Query Frame = 2
Query:  119 LEKRLPMPFLIRENAREFQWGCSDGTIWRRQ 211
            +E  + MPFLIRE+AR+FQWGCS+G +++R+
Sbjct:  302 IESGVEMPFLIREHARKFQWGCSEGMVFKRR 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88918.16400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L4S6_9PHAE2.510e-2262.86Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A2D4BLZ6_PYTIN6.150e-1044.29Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835WP74_9CHLO6.990e-940.54Methyltransf_11 domain-containing protein n=3 Tax=... [more]
A0A836C2Q9_9CHLO7.040e-942.86Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A5D6XU92_9STRA1.110e-850.94Methyltransf_11 domain-containing protein n=1 Tax=... [more]
K3X4G4_GLOUD5.730e-846.67Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A250XJL9_9CHLO2.270e-738.57Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A2J8ABM2_9CHLO1.540e-637.14Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A8J4FDP1_9CHLO5.500e-635.71Methyltransf_12 domain-containing protein n=3 Tax=... [more]
A0A7S0UWG5_9CHLO5.100e-558.06Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88918contigH-elongata_contig88918:1644..2112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.8e-10
Seed eggNOG ortholog2880.D8LPQ6
EggNOG free text desc.Methyltransferase domain
EggNOG OGs28JWG@1,2QSAN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size251
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88918.16400.1prot_H-elongata_contig88918.16400.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88918 1681..1800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931290.325301-UTR-H-elongata_contig88918:1643..16801622931290.325301-UTR-H-elongata_contig88918:1643..1680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88918 1644..1680 -
1691679775.6867948-UTR-H-elongata_contig88918:1643..16801691679775.6867948-UTR-H-elongata_contig88918:1643..1680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88918 1644..1680 -
1622931290.4131289-UTR-H-elongata_contig88918:1800..18121622931290.4131289-UTR-H-elongata_contig88918:1800..1812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88918 1801..1812 -
1691679775.7157013-UTR-H-elongata_contig88918:1800..18121691679775.7157013-UTR-H-elongata_contig88918:1800..1812Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88918 1801..1812 -
1622931290.4285285-UTR-H-elongata_contig88918:2030..21121622931290.4285285-UTR-H-elongata_contig88918:2030..2112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88918 2031..2112 -
1691679775.7265522-UTR-H-elongata_contig88918:2030..21121691679775.7265522-UTR-H-elongata_contig88918:2030..2112Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88918 2031..2112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931290.3984215-CDS-H-elongata_contig88918:1680..18001622931290.3984215-CDS-H-elongata_contig88918:1680..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88918 1681..1800 -
1691679775.7018278-CDS-H-elongata_contig88918:1680..18001691679775.7018278-CDS-H-elongata_contig88918:1680..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88918 1681..1800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88918.16400.1

>prot_H-elongata_contig88918.16400.1 ID=prot_H-elongata_contig88918.16400.1|Name=mRNA_H-elongata_contig88918.16400.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MEENSHFKLEKRLPMPFLIRENAREFQWGCSDGTIWRRQ*
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mRNA from alignment at H-elongata_contig88918:1644..2112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88918.16400.1 ID=mRNA_H-elongata_contig88918.16400.1|Name=mRNA_H-elongata_contig88918.16400.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=469bp|location=Sequence derived from alignment at H-elongata_contig88918:1644..2112- (Himanthalia elongata Himel1 dioecious)
GGAGTGGCTGGGAGGTTTTCAAGAAGGTGGAGGCGTCAACGGTAGCGAGG AGAAAGGCAAGGTGGTCGACAGCTTCGACACGGTACGCAGTAGGTGACTG AAGGATTGAATCGAGAATCGACTCCACACTCTGTTGTTCTTTTCTCTCGA TGTGCCGTGTCCGATTGACCGATCATTTCAACATACACTCAGCCTTTGAA GTACAGATCCATGCCATGCGTTGTACCTACCAGACTCGACGCCATGATCT TTAATACTGCACTACCTCCCATCCCCTCTACGCATTGTCCATTATGGCAG ATTCTTTCTCTCATGGAAGAAAATAGCCACTTTAAGCTTGAAAAGCGGCT GCCGATGCCGTTCCTGATTCGCGAGAACGCGCGGGAGTTCCAGTGGGGTT GCTCCGATGGCACAATTTGGCGAAGGCAGTAACCCACCGCTCTTTTGAAA CTTTAACGGGGTTCAGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig88918:1644..2112-

>mRNA_H-elongata_contig88918.16400.1 ID=mRNA_H-elongata_contig88918.16400.1|Name=mRNA_H-elongata_contig88918.16400.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig88918:1644..2112- (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAAATAGCCACTTTAAGCTTGAAAAGCGGCTGCCGATGCCGTT
CCTGATTCGCGAGAACGCGCGGGAGTTCCAGTGGGGTTGCTCCGATGGCA
CAATTTGGCGAAGGCAGTAAATGGAAGAAAATAGCCACTTTAAGCTTGAA
AAGCGGCTGCCGATGCCGTTCCTGATTCGCGAGAACGCGCGGGAGTTCCA
GTGGGGTTGCTCCGATGGCACAATTTGGCGAAGGCAGTAA
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