mRNA_H-elongata_contig8887.16395.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8887.16395.1
Unique NamemRNA_H-elongata_contig8887.16395.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8887.16395.1 vs. uniprot
Match: D8LE05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE05_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.170e-6
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:    3 FNFVEYPPEEGKKLPSGDDIVKMMEERNSKRLARKVDATRAALNAHL 143
            F FVEYPPE  KKLPSG +IV+MMEER +K   R+  ATR+ ++AHL
Sbjct:   33 FKFVEYPPE-SKKLPSGKEIVEMMEEREAK---RRTAATRSGMDAHL 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8887.16395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE05_ECTSI4.170e-661.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8887contigH-elongata_contig8887:61..2370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004550.1
Hectar predicted targeting categoryother localisation
Exons2
Model size415
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8887.16395.1prot_H-elongata_contig8887.16395.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8887 129..2320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931289.560445-UTR-H-elongata_contig8887:60..1281622931289.560445-UTR-H-elongata_contig8887:60..128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8887 61..128 +
1691679775.321117-UTR-H-elongata_contig8887:60..1281691679775.321117-UTR-H-elongata_contig8887:60..128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8887 61..128 +
1622931289.605696-UTR-H-elongata_contig8887:2320..23701622931289.605696-UTR-H-elongata_contig8887:2320..2370Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8887 2321..2370 +
1691679775.3648171-UTR-H-elongata_contig8887:2320..23701691679775.3648171-UTR-H-elongata_contig8887:2320..2370Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8887 2321..2370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931289.5764287-CDS-H-elongata_contig8887:128..2301622931289.5764287-CDS-H-elongata_contig8887:128..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 129..230 +
1691679775.3306787-CDS-H-elongata_contig8887:128..2301691679775.3306787-CDS-H-elongata_contig8887:128..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 129..230 +
1622931289.5919242-CDS-H-elongata_contig8887:2125..23201622931289.5919242-CDS-H-elongata_contig8887:2125..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 2126..2320 +
1691679775.350558-CDS-H-elongata_contig8887:2125..23201691679775.350558-CDS-H-elongata_contig8887:2125..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 2126..2320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8887.16395.1

>prot_H-elongata_contig8887.16395.1 ID=prot_H-elongata_contig8887.16395.1|Name=mRNA_H-elongata_contig8887.16395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MMEERNSKRLARKVDATRAALNAHLVTDHETSPKALSEREKHQHQHQHRR
QSPAIEQRAKESAAEQATGVKASTGGWLRWLRQGGAIDDNVDDKSVPK*
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mRNA from alignment at H-elongata_contig8887:61..2370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8887.16395.1 ID=mRNA_H-elongata_contig8887.16395.1|Name=mRNA_H-elongata_contig8887.16395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2310bp|location=Sequence derived from alignment at H-elongata_contig8887:61..2370+ (Himanthalia elongata Himel1 dioecious)
AGTTCAATTTTGTCGAGTACCCCCCGGAGGAGGGGAAAAAGCTGCCCTCC
GGAGACGATATCGTGAAGATGATGGAAGAGAGAAATTCCAAGAGGCTAGC
GAGGAAGGTTGACGCTACCAGGGCGGCGCTCAACGCGCACTTGGTGACTG
ACCATGAGACGTCCCCTAAGGTGACTTGAACAAAGAGAGAGAAAAATACA
TGCCGTTTCATATTTTGGAGAGAACATTGGCGCCGGAGAATGTATAGAGG
GTTAGTGCAAGCATCGGCGGGTTTTGGAGGATTGAGGCTTCTGTGAAGGC
GGCATTTACAGTCGTGTTTCGAAAGAGGCGTTCACGATTAAAATATTGGA
GGTATTGCGACGTCTATGGTTTCAATGAGGAGAGAACGCGCACGCGCGCT
ACTCGCTCGACAGAGGCAATGTTCATGATTGGTTTAATTGAATTCTCATA
TAACCTGATGTCAAAATCCAGCCCGTGGTAACAAAGTAGAAAAAATACAC
CATCTGGAAGGAAAAACGTTTTACGTACTCCTCAATACAAAGGGAAACGG
CAATGGTACATAATACTAATACTCAAAAGAAAAGAAAAAAGCACAAAAAA
TATAACACCCTTATTTGTTAACGAACTGCATGTGGCTGTAGGGATGCGGG
CCTATCGGAGAACAATTGAACGAAGAGCCATGGATTCAACGAAAGCAAAA
AAAACGAACATAAAACTCGACGAGACAAAAAAAACCCCGTATCGCCAGAG
AAAGGCAATATGACATCGGGAAACAAAAAACGCCCGGAGGATAAGTTCGC
GCCACTTGTGGCTAATCAACTATGGCGAGCAAACCAGGACGAGCTAGTTT
TGGGCTATCCTCTCCTTGGTCCTCCCCGCCACGTTCAGAAATACTATATA
CATGACGTAGTCCAGTCCTAACTTTTTCTGCAGCGACCCATTTCGTTATG
AAACGCTTCGCTGTTCGGCATTGATACTAAAAGCTTTGAGGTCTTCCAGA
AGACATCCCATCCACTCTTTTTCCTGCACCCCCCCCCCCCCCCCCCCCCT
CTCCCCCCCCCCCCCCCACCCCCCCCTCTCTCTCGTGTCCCCCCGCCCCC
CAACCCCCCCCCGATCGCCTCGATAATCTCACTTCTCTCCTTCATGAGGG
TGTCCAGATAGGAGATCGGGTGGTCAGTGCGATTGTTCCTTCACCAACCG
ATGCAGCGAGTCAAGAAGCTGTAGTAGGCTCGGCGCAGCGTGTCGTAGTG
GCACGCGCGCGGGCTCCACATATTGTCTTCGTTACCTTGGCTTTTAGAAT
CCGGAGTTTAAGCTCCAGGGGTAGCTTGGTCGGTGGTCGGTCGTACAGTT
TGATGGTGTAATTCCGAAATCTGCACCATGCGTTGCGTATGCGCCGGTCG
ACCTCGACGGACAGGTCGGAGTTGTGGTTGACGTCCCCCCCGAGGTATAC
AAACTCGTTCGTTTCGTTTGTACACCTGGCCATTATATGTTAAAAATAAT
GCCCGTTGAGAAAGTGTAGAAGACGTTTACGTACAAGCCTCACCCGCTGG
AACTCCGGTATATGGCGGTAGCAGCCTTCTTCCCACCTGCGTCCCGTTTA
TGAGATAAACATACTGCACGCGCAAAACCTACAGTTTTCCCTCGGGGCGC
TTTCGAGGCCACGTATTTACCTCCCCTCTTGTCCCACACCAATTTATTTC
TGTTTCTATTTTCTGGTTTAACCTCCTCTTGATTCATTTCAATAACTTCC
CTCCCTTTTCGCGTTGGGTAGACACACAATCTCCCACGCTCTTGTAATAT
TTCTTCGTGATTATTTGTCTGCCAGCCACAAAGTAATTTATCATTTCGCG
ACTATTTTGAGGACACACATATTCCAGAAGTTATGTTATTTTTATGATTG
TCTCACTACGTAAAACCTTTACACAACACACACAGCACCACGCATGCCAT
TTTCAAAATGGGGTTTCTCGCCGTTCAACCCCCTCCCCCGTTCCGGCTCT
TCTCTGACTGACAGATCACGTCACGTGTCTCACGCGGTATCGCATCGTTT
ATCGCGTCTCGACAGGCGTTGTCGGAGCGAGAGAAACACCAACATCAACA
TCAACATCGGCGACAATCTCCCGCGATCGAGCAGCGTGCGAAGGAGAGCG
CGGCGGAGCAGGCGACTGGTGTCAAGGCCAGCACCGGGGGTTGGCTGAGA
TGGCTGCGTCAAGGAGGGGCTATCGATGACAATGTCGATGATAAAAGCGT
CCCCAAGTAGGACGGGGGCAGAACATTCTTGGTGTGCAACATTTTCTCGT
GAGGGAGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig8887:61..2370+

>mRNA_H-elongata_contig8887.16395.1 ID=mRNA_H-elongata_contig8887.16395.1|Name=mRNA_H-elongata_contig8887.16395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig8887:61..2370+ (Himanthalia elongata Himel1 dioecious)
ATGATGGAAGAGAGAAATTCCAAGAGGCTAGCGAGGAAGGTTGACGCTAC
CAGGGCGGCGCTCAACGCGCACTTGGTGACTGACCATGAGACGTCCCCTA
AGATGATGGAAGAGAGAAATTCCAAGAGGCTAGCGAGGAAGGTTGACGCT
ACCAGGGCGGCGCTCAACGCGCACTTGGTGACTGACCATGAGACGTCCCC
TAAGGCGTTGTCGGAGCGAGAGAAACACCAACATCAACATCAACATCGGC
GACAATCTCCCGCGATCGAGCAGCGTGCGAAGGAGAGCGCGGCGGAGCAG
GCGACTGGTGTCAAGGCCAGCACCGGGGGTTGGCTGAGATGGCTGCGTCA
AGGAGGGGCTATCGATGACAATGTCGATGATAAAAGCGTCCCCAAGTAGG
CGTTGTCGGAGCGAGAGAAACACCAACATCAACATCAACATCGGCGACAA
TCTCCCGCGATCGAGCAGCGTGCGAAGGAGAGCGCGGCGGAGCAGGCGAC
TGGTGTCAAGGCCAGCACCGGGGGTTGGCTGAGATGGCTGCGTCAAGGAG
GGGCTATCGATGACAATGTCGATGATAAAAGCGTCCCCAAGTAG
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