mRNA_H-elongata_contig88849.16394.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88849.16394.1
Unique NamemRNA_H-elongata_contig88849.16394.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.960e-37
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAIGGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGI 465
            V +A +WHRR+GH+H +SLDILRK  G  + + G +S C VCAVG ++Q  HPK A++  +RPF+L   DL+  F+P A+GG  Y+ K  D++ KW  V+ +  K   + +LQLF  S + P   R+   R D GGEYT   F +YC   GI
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGI 414
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.590e-31
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT + +   +S CGVC + K +Q  HPK +  +++RP +L   D +    P A    G   Y  KITD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 197
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.500e-29
Identity = 67/159 (42.14%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT + F   +S CGVC + K +Q  HPK +  +++RP +L   D V    P A    G   Y  KITD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 197
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.600e-29
Identity = 64/159 (40.25%), Postives = 88/159 (55.35%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT++ +   +S CGVC + K +Q  HPK +  +++RP +L   D +    P A    G   Y  K+TD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:  363 LVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 521
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.800e-29
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT + +   +S CGVC + K +Q  HPK +  +++RP +L   D +    P A    G   Y  KITD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:  415 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 573
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.630e-29
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT + +   +S CGVC + K +Q  HPK +  +++RP +L   D +    P A    G   Y  KITD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 197
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.690e-29
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT + +   +S CGVC + K +Q  HPK +  +++RP +L   D +    P A    G   Y  KITD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 197
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.810e-29
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT + +   +S CGVC + K +Q  HPK +  +++RP +L   D +    P A    G   Y  KITD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 197
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.830e-29
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   10 VANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAI---GGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            + +A  WHRRLGHL+A+SLDILRK  GT + +   +S CGVC + K +Q  HPK +  +++RP +L   D +    P A    G   Y  KITD+YTK   VY L  K    +++  +        G RI   R D GGE TG EFR YC  + I  E+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEY 197
[Close]
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.990e-29
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   91 TDITFEGGVSDCGVCAVGKAQQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAIGGCKYVSKITDEYTKWTAVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYCLATGIIQEF 477
            T +  +  ++ C  C + K+ Q  HPKTA H   +P +  Y DL+   +P A GG  YVSK TDEY++   VY + +KD+A+ +L  FI   VIP G R+ R R+DNGGEYT E +R +C   GI+QEF
Sbjct:   10 TGVKLKDKMAPCETCIIQKSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEF 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88849.16394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE3.960e-3744.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ34_9PHAE1.590e-3140.88Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRJ1_9PHAE1.500e-2942.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE1.600e-2940.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE1.800e-2940.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE3.630e-2940.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE3.690e-2940.88Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJR8_9PHAE3.810e-2940.88Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE3.830e-2940.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE3.990e-2944.19Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88849contigH-elongata_contig88849:1668..2144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.5
Seed ortholog evalue7.3e-19
Seed eggNOG ortholog4081.Solyc09g056150.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931289.4787135-CDS-H-elongata_contig88849:1667..21441622931289.4787135-CDS-H-elongata_contig88849:1667..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88849 1668..2144 +
1691679775.3098388-CDS-H-elongata_contig88849:1667..21441691679775.3098388-CDS-H-elongata_contig88849:1667..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88849 1668..2144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88849.16394.1prot_H-elongata_contig88849.16394.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88849 1668..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88849.16394.1

>prot_H-elongata_contig88849.16394.1 ID=prot_H-elongata_contig88849.16394.1|Name=mRNA_H-elongata_contig88849.16394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MNAVANAQMWHRRLGHLHAQSLDILRKKYGTDITFEGGVSDCGVCAVGKA
QQLAHPKTANHKVNRPFKLCYGDLVRLFTPVAIGGCKYVSKITDEYTKWT
AVYFLTTKDQALQSLQLFIGSTVIPFGGRIVRWRTDNGGEYTGEEFRQYC
LATGIIQEF
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mRNA from alignment at H-elongata_contig88849:1668..2144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88849.16394.1 ID=mRNA_H-elongata_contig88849.16394.1|Name=mRNA_H-elongata_contig88849.16394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig88849:1668..2144+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTTGCCAATGCCCAGATGTGGCACCGACGGCTGGGTCATCT
CCATGCTCAGAGCCTAGATATTCTACGTAAGAAATACGGCACTGACATCA
CCTTCGAGGGGGGCGTCTCGGACTGCGGCGTTTGCGCCGTGGGGAAGGCT
CAACAGCTTGCTCATCCCAAGACCGCCAATCACAAGGTCAACCGGCCTTT
CAAGCTGTGCTATGGAGACCTGGTGAGGCTCTTCACGCCTGTGGCCATAG
GCGGCTGCAAGTACGTCAGCAAAATAACCGACGAGTACACAAAGTGGACC
GCCGTCTACTTCTTGACTACTAAGGACCAAGCTCTTCAGTCGCTTCAACT
GTTCATCGGCTCGACAGTCATTCCCTTCGGCGGTCGCATCGTTCGTTGGC
GCACCGACAATGGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTGC
TTGGCAACCGGTATTATCCAAGAGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig88849:1668..2144+

>mRNA_H-elongata_contig88849.16394.1 ID=mRNA_H-elongata_contig88849.16394.1|Name=mRNA_H-elongata_contig88849.16394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig88849:1668..2144+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCAGTTGCCAATGCCCAGATGTGGCACCGACGGCTGGGTCATCT
CCATGCTCAGAGCCTAGATATTCTACGTAAGAAATACGGCACTGACATCA
CCTTCGAGGGGGGCGTCTCGGACTGCGGCGTTTGCGCCGTGGGGAAGGCT
CAACAGCTTGCTCATCCCAAGACCGCCAATCACAAGGTCAACCGGCCTTT
CAAGCTGTGCTATGGAGACCTGGTGAGGCTCTTCACGCCTGTGGCCATAG
GCGGCTGCAAGTACGTCAGCAAAATAACCGACGAGTACACAAAGTGGACC
GCCGTCTACTTCTTGACTACTAAGGACCAAGCTCTTCAGTCGCTTCAACT
GTTCATCGGCTCGACAGTCATTCCCTTCGGCGGTCGCATCGTTCGTTGGC
GCACCGACAATGGCGGCGAGTACACCGGGGAGGAGTTCCGGCAGTACTGC
TTGGCAACCGGTATTATCCAAGAGTTCATGAACGCAGTTGCCAATGCCCA
GATGTGGCACCGACGGCTGGGTCATCTCCATGCTCAGAGCCTAGATATTC
TACGTAAGAAATACGGCACTGACATCACCTTCGAGGGGGGCGTCTCGGAC
TGCGGCGTTTGCGCCGTGGGGAAGGCTCAACAGCTTGCTCATCCCAAGAC
CGCCAATCACAAGGTCAACCGGCCTTTCAAGCTGTGCTATGGAGACCTGG
TGAGGCTCTTCACGCCTGTGGCCATAGGCGGCTGCAAGTACGTCAGCAAA
ATAACCGACGAGTACACAAAGTGGACCGCCGTCTACTTCTTGACTACTAA
GGACCAAGCTCTTCAGTCGCTTCAACTGTTCATCGGCTCGACAGTCATTC
CCTTCGGCGGTCGCATCGTTCGTTGGCGCACCGACAATGGCGGCGAGTAC
ACCGGGGAGGAGTTCCGGCAGTACTGCTTGGCAACCGGTATTATCCAAGA
GTTC
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