mRNA_H-elongata_contig88812.16393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88812.16393.1
Unique NamemRNA_H-elongata_contig88812.16393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88812.16393.1 vs. uniprot
Match: D7FRP4_ECTSI (Similar to Iron-containing Alcohol Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP4_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.300e-18
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:  118 SAGLPEGDEGIA--DLESLTNPAKDAEYGDDVALQYGVSGSA----VGASDQFFSADTRVVFGVNALEIGLLELYEMG 333
            SAG   G  G    DLESL NPAK+ +YGD+ ALQYGV+  A     GA+  FFSADTRVVFGVNALEIGL+ELY++G
Sbjct:   37 SAGTTRGRRGHCRKDLESLANPAKEKDYGDNSALQYGVTVGAEAAGAGAAHHFFSADTRVVFGVNALEIGLVELYDLG 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88812.16393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRP4_ECTSI8.300e-1862.82Similar to Iron-containing Alcohol Dehydrogenase n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88812contigH-elongata_contig88812:224..1563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size333
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88812.16393.1prot_H-elongata_contig88812.16393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88812 224..1563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931289.390115-CDS-H-elongata_contig88812:223..4021622931289.390115-CDS-H-elongata_contig88812:223..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88812 224..402 -
1691679775.2782369-CDS-H-elongata_contig88812:223..4021691679775.2782369-CDS-H-elongata_contig88812:223..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88812 224..402 -
1622931289.4053204-CDS-H-elongata_contig88812:638..7131622931289.4053204-CDS-H-elongata_contig88812:638..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88812 639..713 -
1691679775.2871985-CDS-H-elongata_contig88812:638..7131691679775.2871985-CDS-H-elongata_contig88812:638..713Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88812 639..713 -
1622931289.4220088-CDS-H-elongata_contig88812:1484..15631622931289.4220088-CDS-H-elongata_contig88812:1484..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88812 1485..1563 -
1691679775.2960818-CDS-H-elongata_contig88812:1484..15631691679775.2960818-CDS-H-elongata_contig88812:1484..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88812 1485..1563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88812.16393.1

>prot_H-elongata_contig88812.16393.1 ID=prot_H-elongata_contig88812.16393.1|Name=mRNA_H-elongata_contig88812.16393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
LKHRVFGSWSASGVDPFDRKASPLAIGIERGRFRPRWRLSAGLPEGDEGI
ADLESLTNPAKDAEYGDDVALQYGVSGSAVGASDQFFSADTRVVFGVNAL
EIGLLELYEMG
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mRNA from alignment at H-elongata_contig88812:224..1563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88812.16393.1 ID=mRNA_H-elongata_contig88812.16393.1|Name=mRNA_H-elongata_contig88812.16393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1340bp|location=Sequence derived from alignment at H-elongata_contig88812:224..1563- (Himanthalia elongata Himel1 dioecious)
CTGAAGCACAGGGTTTTCGGGTCATGGTCAGCAAGCGGGGTTGATCCATT
TGATCGAAAAGCATCTCCACTAGCGATAGGTGCAGTTAACAAGCAGTTAG
TAGGAAAAAACAATATCCCTCTCCCCCAGAGCACACTCGATTTTTTTTGG
GTGCTACACTCGGTTATTATTTTTCATTAGACTTAACCTCGGTATCGCGC
AATCCCTCGCGCGACACCATTTGACAACACTCGGAATGTTATCAGATGTG
AGCGTACATGTGAGCGTACTCCTTATTTCCGGAAAGACACGTAAGATACT
TGAGTGCATTTAAGATTTTGAAGACACTGTTGAAAGTCTGGTTTGACGAG
CCGGAAGCGGGGTTTGGACGTGCGAGGCTTTCGATAAGAAGTACGGGAAA
CTCCGCCGCTCCTCGGAGGCACATATTTCAGTGAATATCAATGTTTCTGT
GCAATTCTGTATTTCAAAGTATTATCTTTCATTCGTTATATATTGTTGGG
TCTCTTCCCAGGGCTAATGTATATGCTGTCTCTTGACGACAACCAGCCCC
CCCCCTCCCCCGACCCTCTCCGCCTTTGACCTCAATTTTCCGCAGAAAGA
GCGAACGCTCTCTATCGTATTTTCATCAACCGCCCAGCGAAGTACAGCAC
TGCTGTCCTGATCTGTCCTGCCCTCTACTGTCCTCTACTGTCCTAATACT
TGTAGAGCCACGATTATCAAGCCGACTTTTAAGTTTGATCCACGTTTTAG
ATCTCGCCCCATGCCCGGTGCGGCGTGTAGGGTGCTTACAAGGCGTTGAT
TTCGGAATCGTGCTGACATCAACGGACGTTTTTTTCCTGGTGTGGTGTAG
GGATAGAGAGAGGACGCTTTCGACCGCGGTGGCGACTCTCGGCGGGCCTG
CCGGAGGGAGACGAGGGCATCGCAGGTGCGCCTGGCGGTCCCCCCCTCGA
TCGTATGACATGTGTTGCCTTCGGAAAGGTGTTGGACGCAGGGAGAAGAG
AAGAGCGAATATCGCTCTACCGCAAACAGAAAAATGCACAACAATGCCCA
GTCGTGGCCATTCATTGTGCCAAGGACGACGCTCCGTCGTCACCCCGCTT
AATCGGACGCGCCATGACGCCTTCCCCACCGGAAACCCGTCTGTTTCATA
TTTGAGAGTAGATCTGGAGAGCTTGACTAATCCTGCGAAGGACGCGGAGT
ACGGGGACGATGTGGCCCTGCAGTATGGCGTGAGCGGATCGGCGGTAGGA
GCGTCTGACCAGTTCTTTTCCGCCGACACCCGCGTCGTCTTTGGTGTAAA
TGCCCTCGAGATCGGCCTGCTGGAGCTTTACGAAATGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig88812:224..1563-

>mRNA_H-elongata_contig88812.16393.1 ID=mRNA_H-elongata_contig88812.16393.1|Name=mRNA_H-elongata_contig88812.16393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig88812:224..1563- (Himanthalia elongata Himel1 dioecious)
CTGAAGCACAGGGTTTTCGGGTCATGGTCAGCAAGCGGGGTTGATCCATT
TGATCGAAAAGCATCTCCACTAGCGATAGCTGAAGCACAGGGTTTTCGGG
TCATGGTCAGCAAGCGGGGTTGATCCATTTGATCGAAAAGCATCTCCACT
AGCGATAGGGATAGAGAGAGGACGCTTTCGACCGCGGTGGCGACTCTCGG
CGGGCCTGCCGGAGGGAGACGAGGGCATCGCAGGGATAGAGAGAGGACGC
TTTCGACCGCGGTGGCGACTCTCGGCGGGCCTGCCGGAGGGAGACGAGGG
CATCGCAGATCTGGAGAGCTTGACTAATCCTGCGAAGGACGCGGAGTACG
GGGACGATGTGGCCCTGCAGTATGGCGTGAGCGGATCGGCGGTAGGAGCG
TCTGACCAGTTCTTTTCCGCCGACACCCGCGTCGTCTTTGGTGTAAATGC
CCTCGAGATCGGCCTGCTGGAGCTTTACGAAATGGGCATCTGGAGAGCTT
GACTAATCCTGCGAAGGACGCGGAGTACGGGGACGATGTGGCCCTGCAGT
ATGGCGTGAGCGGATCGGCGGTAGGAGCGTCTGACCAGTTCTTTTCCGCC
GACACCCGCGTCGTCTTTGGTGTAAATGCCCTCGAGATCGGCCTGCTGGA
GCTTTACGAAATGGGC
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