mRNA_H-elongata_contig88767.16389.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A6H5JE16_9PHAE (MHD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE16_9PHAE) HSP 1 Score: 198 bits (504), Expect = 5.130e-60 Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 1
Query: 16 SNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
SNHI EREEMEQKP+FTVEGVT+VYVQYNNLILMSV+KRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ
Sbjct: 34 SNHIQEREEMEQKPIFTVEGVTFVYVQYNNLILMSVTKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 136
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A835Z8U5_9STRA (Clathrin assembly complex, medium subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U5_9STRA) HSP 1 Score: 178 bits (452), Expect = 2.810e-52 Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 1
Query: 16 SNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
S +I EREE +Q+PVFT EG T+VY++YNNL+LMSV+KRNSNVALMLVYLYKL DVF+DYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ
Sbjct: 34 SLYIQEREETDQQPVFTEEGYTFVYIRYNNLLLMSVTKRNSNVALMLVYLYKLTDVFRDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 136
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A7S3M290_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M290_9STRA) HSP 1 Score: 160 bits (404), Expect = 9.110e-48 Identity = 74/103 (71.84%), Postives = 91/103 (88.35%), Query Frame = 1
Query: 16 SNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
S HI E++EM+ +PVFT +G+TY+Y++ NNL+LM+ +K+NSNV L+L YLYKL VFKDYFGELEEESIRDNFV++YELLDETMDFGYPQT ESKILRE +TQ
Sbjct: 34 SMHIQEKDEMDLRPVFTEDGITYIYIKCNNLLLMAATKKNSNVTLILFYLYKLTTVFKDYFGELEEESIRDNFVVVYELLDETMDFGYPQTCESKILREVVTQ 136
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: W7U403_9STRA (Ap-1 complex subunit mu-1-like isoform 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U403_9STRA) HSP 1 Score: 166 bits (419), Expect = 2.740e-47 Identity = 79/103 (76.70%), Postives = 94/103 (91.26%), Query Frame = 1
Query: 16 SNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
+ ++ E+EE EQ+P+FT EG T+ Y++YNNL L+SV+KRNSNVALMLVYL +LVDVFK+YFGELEEESIRDNFVIIYEL+DETMDFGYPQT E+KILREYITQ
Sbjct: 34 ATYLQEKEESEQRPIFTEEGCTFAYLKYNNLFLLSVTKRNSNVALMLVYLSRLVDVFKEYFGELEEESIRDNFVIIYELMDETMDFGYPQTTEAKILREYITQ 136
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A7S3HYH8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3HYH8_9SPIT) HSP 1 Score: 152 bits (384), Expect = 6.290e-45 Identity = 71/108 (65.74%), Postives = 89/108 (82.41%), Query Frame = 1
Query: 1 CSPFVSNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
C S H++E EE +++PV+ G TYVY++YNNL +M+V++RNSN A++L++LY+LVDVFKDYF ELEEESIRDNFVI YEL+DE MDFGYPQ E KILREYITQ
Sbjct: 14 CVERFSGHVLEAEEADERPVWLEHGTTYVYIKYNNLYIMAVTQRNSNAAMILLFLYRLVDVFKDYFKELEEESIRDNFVITYELMDEMMDFGYPQVSEPKILREYITQ 121
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A7S2Y0S1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0S1_9STRA) HSP 1 Score: 159 bits (402), Expect = 7.500e-45 Identity = 71/103 (68.93%), Postives = 94/103 (91.26%), Query Frame = 1
Query: 16 SNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
+ +I EEME +P+FT +G+T++Y++YNNL L++V+K+NSNV L+L+YLYKLV+VFKDYFGELEEESIRDNFVIIYELLDET+DFGYPQ ++SK+L+E+ITQ
Sbjct: 34 AQYIQNTEEMEARPIFTEDGITFIYIRYNNLYLLTVTKQNSNVGLILIYLYKLVEVFKDYFGELEEESIRDNFVIIYELLDETVDFGYPQALDSKVLKEFITQ 136
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: F0YHG2_AURAN (MHD domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHG2_AURAN) HSP 1 Score: 158 bits (400), Expect = 1.450e-44 Identity = 73/101 (72.28%), Postives = 91/101 (90.10%), Query Frame = 1
Query: 22 HIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
++ E +EM+Q+P+FT EG T+ Y ++NNL LM V+KRNSN+AL+L+YLY+LV VFKDYFGEL+EESIRDNFVIIYEL+DETMDFGYPQ M+SKILRE+ITQ
Sbjct: 36 YLQENDEMDQRPIFTDEGFTFAYTKHNNLFLMCVTKRNSNIALLLMYLYRLVTVFKDYFGELDEESIRDNFVIIYELMDETMDFGYPQAMDSKILREFITQ 136
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A662XXV4_9STRA (Clat_adaptor_s domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXV4_9STRA) HSP 1 Score: 150 bits (378), Expect = 2.110e-44 Identity = 71/103 (68.93%), Postives = 92/103 (89.32%), Query Frame = 1
Query: 16 SNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
++++ E+E+ EQ+PVFT +G T+VY+++NNL LM+V+K NSNVALML+YL ++ VF+DYFGELEEESIRDNFVII+ELLDETMD GYPQT E++ILREYITQ
Sbjct: 34 THYVQEKEDSEQRPVFTEDGYTFVYLKHNNLYLMTVTKVNSNVALMLMYLNRICQVFQDYFGELEEESIRDNFVIIFELLDETMDHGYPQTTEARILREYITQ 136
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A7S2R9Z0_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2R9Z0_9STRA) HSP 1 Score: 157 bits (398), Expect = 3.750e-44 Identity = 74/103 (71.84%), Postives = 91/103 (88.35%), Query Frame = 1
Query: 16 SNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
+ +I E EE + +P+FT +G T+VY+++NNL LM+V+KRN+NVALM YLY+LV VFKDYFGEL+EESIRDNFVIIYELLDET DFGYPQ+M+SKILREYITQ
Sbjct: 48 ARYIQETEEFDMRPIFTEDGYTFVYIKHNNLYLMTVTKRNANVALMFTYLYRLVSVFKDYFGELDEESIRDNFVIIYELLDETNDFGYPQSMDSKILREYITQ 150
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Match: A0A0M5K9V4_EMIHU (Adaptor protein complex 1 subunit mu (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A0M5K9V4_EMIHU) HSP 1 Score: 145 bits (366), Expect = 1.370e-42 Identity = 67/108 (62.04%), Postives = 87/108 (80.56%), Query Frame = 1
Query: 1 CSPFVSNHIMEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVDVFKDYFGELEEESIRDNFVIIYELLDETMDFGYPQTMESKILREYITQ 324
C S H++E E +++PV+ G TY+Y++YNNL +M+V++RNSN A++L++LY+LV+V KDYF ELEEESIRDNFVI YEL+DE MDFGYPQ E KILREYITQ
Sbjct: 29 CVERFSGHVLEAEANDERPVWLEHGTTYIYIKYNNLYIMAVTQRNSNAAMILLFLYRLVEVLKDYFKELEEESIRDNFVITYELMDEMMDFGYPQVSEPKILREYITQ 136 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88767.16389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88767.16389.1 >prot_H-elongata_contig88767.16389.1 ID=prot_H-elongata_contig88767.16389.1|Name=mRNA_H-elongata_contig88767.16389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp MEREEMEQKPVFTVEGVTYVYVQYNNLILMSVSKRNSNVALMLVYLYKLVback to top mRNA from alignment at H-elongata_contig88767:1980..2633+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88767.16389.1 ID=mRNA_H-elongata_contig88767.16389.1|Name=mRNA_H-elongata_contig88767.16389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig88767:1980..2633+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88767:1980..2633+ >mRNA_H-elongata_contig88767.16389.1 ID=mRNA_H-elongata_contig88767.16389.1|Name=mRNA_H-elongata_contig88767.16389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig88767:1980..2633+ (Himanthalia elongata Himel1 dioecious)back to top |