mRNA_H-elongata_contig88721.16386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88721.16386.1
Unique NamemRNA_H-elongata_contig88721.16386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: D7FKC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC5_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.110e-35
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RC IWSEPGVV++AAFDFSQTEEFL AAE L GPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL
Sbjct:  198 RCCIWSEPGVVDKAAFDFSQTEEFLTAAEGLAGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 264
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: A0A6H5KAL1_9PHAE (Leuk-A4-hydro_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.020e-35
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RC IWSEPGVV++AAFDFSQTEEFL AAE L GPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL
Sbjct:  198 RCCIWSEPGVVDKAAFDFSQTEEFLTAAEGLAGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 264
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: A0A7S2DSI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSI6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.280e-33
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RCR+WSEP +VE   F+F QTE FL+ AE+L GPY W RYDVLCLPPSFP+GGMENPCLTFVTPTLL
Sbjct:   31 RCRVWSEPSMVEAVRFEFDQTETFLKVAEDLAGPYRWTRYDVLCLPPSFPFGGMENPCLTFVTPTLL 97
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: A0A7S0W8K5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W8K5_9CRYP)

HSP 1 Score: 120 bits (301), Expect = 3.760e-31
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RCR+W EP V+++ A++F++TEEFL+ AE L  PY+WGRYDVLCLPPSFPYGGMENPCLTFVTPTLL
Sbjct:  230 RCRVWCEPSVLDKVAYEFAETEEFLKTAESLTCPYQWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 296
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: A0A6U4S5G1_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4S5G1_HEMAN)

HSP 1 Score: 121 bits (303), Expect = 1.700e-30
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RCR+WSEP V+++ A++F++TE+FL+ AE L  PY+WGRYDVLCLPPSFPYGGMENPCLTFVTPTLL
Sbjct:  221 RCRVWSEPSVLDKVAYEFAETEDFLRTAESLTCPYQWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 287
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: B8CCL2_THAPS (Leuk-A4-hydro_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCL2_THAPS)

HSP 1 Score: 119 bits (298), Expect = 8.000e-30
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RCR+WSEP +VE   ++F Q E+F+ AAEEL  PY+WGRYD+LCLPPSFPYGGMENPCLTFVTPTLL
Sbjct:  227 RCRVWSEPSMVEAVQYEFGQVEQFIVAAEELTMPYQWGRYDILCLPPSFPYGGMENPCLTFVTPTLL 293
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: K0SL83_THAOC (Leuk-A4-hydro_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL83_THAOC)

HSP 1 Score: 118 bits (296), Expect = 1.600e-29
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RCR+WSEP +V+  AF+FSQ EEFL AAE L  PY+W RYD+LCLPPSFPYGGMENPCLTFVTPTLL
Sbjct:  295 RCRVWSEPSMVDAVAFEFSQVEEFLVAAESLTLPYQWKRYDLLCLPPSFPYGGMENPCLTFVTPTLL 361
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: A0A2P6NCZ0_9EUKA (Leuk-A4-hydro_C domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCZ0_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 1.800e-29
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            R R+WSEP  VER A++F++TEEF+Q AE+ LGPY WGRYD+L LPPSFPYGGMENPCLTFVTPTLL
Sbjct:  214 RTRVWSEPSFVERGAYEFAETEEFIQVAEKHLGPYVWGRYDILLLPPSFPYGGMENPCLTFVTPTLL 280
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: A0A1E7EV22_9STRA (Leukotriene A-4 hydrolase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EV22_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.270e-29
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLG-PYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            RC IWSEP VVE AAF+FS+TEEFL AAE + G  Y WGRYD+LCLPPSFPYGGMENPCLTFVTPTLL
Sbjct:  127 RCAIWSEPSVVEAAAFEFSETEEFLCAAEAITGMDYVWGRYDLLCLPPSFPYGGMENPCLTFVTPTLL 194
[Close]
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Match: C1MGE7_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MGE7_MICPC)

HSP 1 Score: 117 bits (292), Expect = 5.770e-29
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFPYGGMENPCLTFVTPTLL 201
            R R+WSEP +VE  AF+F++TE+FL AAEE+ GPY WGRYD+L LPPSFPYGGMENPCLTFVTPTLL
Sbjct:  539 RSRVWSEPSMVEAGAFEFNETEDFLAAAEEVAGPYVWGRYDLLLLPPSFPYGGMENPCLTFVTPTLL 605
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88721.16386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKC5_ECTSI1.110e-3591.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAL1_9PHAE4.020e-3591.04Leuk-A4-hydro_C domain-containing protein n=1 Tax=... [more]
A0A7S2DSI6_9STRA6.280e-3376.12Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0W8K5_9CRYP3.760e-3174.63Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6U4S5G1_HEMAN1.700e-3074.63Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
B8CCL2_THAPS8.000e-3074.63Leuk-A4-hydro_C domain-containing protein n=1 Tax=... [more]
K0SL83_THAOC1.600e-2977.61Leuk-A4-hydro_C domain-containing protein n=1 Tax=... [more]
A0A2P6NCZ0_9EUKA1.800e-2976.12Leuk-A4-hydro_C domain-containing protein n=1 Tax=... [more]
A0A1E7EV22_9STRA2.270e-2980.88Leukotriene A-4 hydrolase (Fragment) n=1 Tax=Fragi... [more]
C1MGE7_MICPC5.770e-2976.12Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88721contigH-elongata_contig88721:1713..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.3e-30
Seed eggNOG ortholog2880.D7FKC5
Preferred nameLTA4H
KEGG rclassRC00096,RC00141,RC00838
KEGG koko:K01254,ko:K15428
KEGG ReactionR00899,R03057,R04951
KEGG Pathwayko00480,ko00590,ko01100,map00480,map00590,map01100
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000328,GO:0001676,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004177,GO:0004301,GO:0004463,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005775,GO:0005829,GO:0006082,GO:0006508,GO:0006518,GO:0006629,GO:0006631,GO:0006633,GO:0006690,GO:0006691,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009719,GO:0009725,GO:0009888,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010243,GO:0010883,GO:0012505,GO:0016053,GO:0016192,GO:0016787,GO:0016801,GO:0016803,GO:0019370,GO:0019538,GO:0019752,GO:0030141,GO:0030154,GO:0030163,GO:0030323,GO:0030324,GO:0030855,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032368,GO:0032369,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0032890,GO:0032891,GO:0032940,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0034641,GO:0035295,GO:0036230,GO:0042119,GO:0042221,GO:0042277,GO:0042759,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043271,GO:0043299,GO:0043312,GO:0043434,GO:0043436,GO:0043603,GO:0044070,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046394,GO:0046456,GO:0046872,GO:0046903,GO:0046914,GO:0048513,GO:0048519,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051641,GO:0060428,GO:0060429,GO:0060479,GO:0060487,GO:0060509,GO:0060541,GO:0061957,GO:0065007,GO:0065008,GO:0070006,GO:0070011,GO:0070013,GO:0070727,GO:0070820,GO:0071704,GO:0072330,GO:0072665,GO:0090087,GO:0097708,GO:0099503,GO:0101002,GO:0120113,GO:0140096,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1903792,GO:1904724,GO:1904813,GO:1905952,GO:1905953,GO:2000191,GO:2000192
EggNOG free text desc.epoxide hydrolase activity
EggNOG OGsCOG0308@1,KOG1047@2759
EC3.3.2.6
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931288.424173-CDS-H-elongata_contig88721:1712..19131622931288.424173-CDS-H-elongata_contig88721:1712..1913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88721 1713..1913 +
1691679774.8381097-CDS-H-elongata_contig88721:1712..19131691679774.8381097-CDS-H-elongata_contig88721:1712..1913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88721 1713..1913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88721.16386.1prot_H-elongata_contig88721.16386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88721 1713..1913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88721.16386.1

>prot_H-elongata_contig88721.16386.1 ID=prot_H-elongata_contig88721.16386.1|Name=mRNA_H-elongata_contig88721.16386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
RCRIWSEPGVVERAAFDFSQTEEFLQAAEELLGPYEWGRYDVLCLPPSFP
YGGMENPCLTFVTPTLL
back to top

mRNA from alignment at H-elongata_contig88721:1713..1913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88721.16386.1 ID=mRNA_H-elongata_contig88721.16386.1|Name=mRNA_H-elongata_contig88721.16386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig88721:1713..1913+ (Himanthalia elongata Himel1 dioecious)
AGGTGCAGAATATGGTCCGAGCCCGGAGTTGTAGAGAGGGCCGCGTTCGA
CTTCTCCCAGACAGAGGAGTTCCTGCAGGCAGCGGAAGAGCTTCTGGGGC
CGTACGAGTGGGGCCGCTACGATGTTCTATGCCTCCCGCCTTCGTTTCCC
TACGGTGGCATGGAAAACCCTTGCCTTACGTTCGTCACACCCACGCTGCT
G
back to top

Coding sequence (CDS) from alignment at H-elongata_contig88721:1713..1913+

>mRNA_H-elongata_contig88721.16386.1 ID=mRNA_H-elongata_contig88721.16386.1|Name=mRNA_H-elongata_contig88721.16386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig88721:1713..1913+ (Himanthalia elongata Himel1 dioecious)
AGGTGCAGAATATGGTCCGAGCCCGGAGTTGTAGAGAGGGCCGCGTTCGA
CTTCTCCCAGACAGAGGAGTTCCTGCAGGCAGCGGAAGAGCTTCTGGGGC
CGTACGAGTGGGGCCGCTACGATGTTCTATGCCTCCCGCCTTCGTTTCCC
TACGGTGGCATGGAAAACCCTTGCCTTACGTTCGTCACACCCACGCTGCT
GAGGTGCAGAATATGGTCCGAGCCCGGAGTTGTAGAGAGGGCCGCGTTCG
ACTTCTCCCAGACAGAGGAGTTCCTGCAGGCAGCGGAAGAGCTTCTGGGG
CCGTACGAGTGGGGCCGCTACGATGTTCTATGCCTCCCGCCTTCGTTTCC
CTACGGTGGCATGGAAAACCCTTGCCTTACGTTCGTCACACCCACGCTGC
TG
back to top