mRNA_H-elongata_contig88673.16382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88673.16382.1
Unique NamemRNA_H-elongata_contig88673.16382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 8.940e-33
Identity = 68/170 (40.00%), Postives = 104/170 (61.18%), Query Frame = 1 
Query:    4 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSE----SGNLY-SFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 477
            +V+VPG+G NLFSV       + ++F  +NPRLE  +  VP++ +    +G +  S  + LGA+       G +   LA+  V  A +WHRR+GH++ + LD+LR++  +GI + G + DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG KY +K
Sbjct:  489 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATK 657
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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.710e-32
Identity = 67/170 (39.41%), Postives = 104/170 (61.18%), Query Frame = 1 
Query:    4 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSE----SGNLY-SFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 477
            +++VPG+G NLFSV       + ++F  +NPRLE  +  VP++ +    +G +  S  + LGA+       G +   LA+  V  A +WHRR+GH++ + LD+LR++  +GI + G + DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG KY +K
Sbjct:  489 VMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATK 657
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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.550e-31
Identity = 67/171 (39.18%), Postives = 100/171 (58.48%), Query Frame = 1 
Query:    4 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRS------ESGNLYSFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 477
            +++VPG+G NLFSV     K + T+F  +NPRLE  +V  P+++          +YS  + LG +       G +   LA+  V +A +WHRR+GH++ + LD+LRK    G+ + G +  C VC +GK+ Q  HPK A + V RPFQ    D + PFTP A+GG+KY +K
Sbjct:  415 VILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALK-VESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLSPFTPTALGGSKYATK 581
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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.850e-31
Identity = 66/170 (38.82%), Postives = 101/170 (59.41%), Query Frame = 1 
Query:    4 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSE----SGNLY-SFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 477
            +V+VPG+G NLFSV       + ++F  +NPRLE  +  VP++ +    +G +  S  + LGA+       G +   LA+  V  A +WHRR+GH++ + LD+LR++  +GI + G + DC  C +GK+ Q  HPK A + V+ PFQL + D  GPFT   +GG KY +K
Sbjct:  394 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATK 562
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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.040e-28
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1 
Query:    4 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRS------ESGNLYSFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 477
            +++VPG+G NLFSV     K + T+F  +NPRLE  +V  P+++          +YS  + LG +       G +   LA+  V +A +WHRR+G ++ + LD+LRK+    + + G + DC VC +GK+ Q  HPK A + V RPFQ      + PFTP  +GG K  +K
Sbjct:  668 VILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALK-VESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFKNATK 837
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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.420e-26
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:  136 ESGNLYSFVLDLGADGYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 477
            E   LY F +DL   G     +A+  V +A +WHRR+GH+H + LDILRK  G G+ + G +S C VCAVG ++Q  HPK A++  +RPFQL   DLMGPF+P A+GG  YI K
Sbjct:  239 ECDELYHFTMDLPETG-EISGVAL-PVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKK 350
[Close]
BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.230e-23
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 1 
Query:   10 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDLGADGYSAKELAMN------------------------------AVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 477
            VVPG+GRN+FS   + K  +  + +  NP L     T+PL+ +  ++    +D+     S +  A                                A  NA  WHR L HL+ + +++LRK+   G+ F  +++ C +CA+ K++QLAHP+  N +   P QL Y D MG  TP+A GG  Y+SK
Sbjct:  207 VVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSK 392
[Close]
BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.110e-21
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = 1 
Query:   10 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDL----GADGYSAKELA----------MNAVA----NAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAI---GGNKYISK 477
            +VPG+GRN+FS  +  KK +  + +   P L      +PL  +  +     LD+           K L            NAV     +A  WHRRLGHL+A+ LDILRK  GTG+ +  ++S CGVC + K +Q  HPK +  +++RP QL     MGP  P A    G   Y+ K
Sbjct:  242 IVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRK 418
[Close]
BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.950e-20
Identity = 58/165 (35.15%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:   10 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDL----GADGYSAKELA----------MNAVA----NAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 450
            +VPG+GRN+FS  +  KK +  + +   P L      +PL  +  +     LD+           K L            NAV     +A  WHRRLGHL+A+ LDIL K  GT + +  ++S CGVC + K +Q  +PK +  +++RP QL   D MGP TP A
Sbjct:   60 IVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPA 224
[Close]
BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JWA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.590e-20
Identity = 59/165 (35.76%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:   10 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDL----GADGYSAKELA----------MNAVA----NAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 450
            +VPG+GRN+FS  +  KK +  + +   PRL      +PL  +  +     LD+           K L            NAV     +A  WHRRLGHL+A+ LDILRK  GTG+ +  ++S CGVC + K +Q  H K +  +++RP QL     MGP  P A
Sbjct:  235 IVPGLGRNIFSPTSLLKKGLRCVVEESTPRLTIQGNVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHLKQSTRELSRPGQLVVIGNMGPVNPPA 399
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE8.940e-3340.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE1.710e-3239.41Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J9Q7_9PHAE6.550e-3139.18gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5JYB5_9PHAE6.850e-3138.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVF6_9PHAE6.040e-2836.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1J1_9PHAE2.420e-2649.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD3_9PHAE2.230e-2331.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG5_9PHAE3.110e-2135.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M6_9PHAE1.950e-2035.15gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5JWA3_9PHAE2.590e-2035.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88673contigH-elongata_contig88673:2181..2657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog6334.EFV57947
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.8595815-CDS-H-elongata_contig88673:2180..26571622931287.8595815-CDS-H-elongata_contig88673:2180..2657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88673 2181..2657 +
1691679774.6217759-CDS-H-elongata_contig88673:2180..26571691679774.6217759-CDS-H-elongata_contig88673:2180..2657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88673 2181..2657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88673.16382.1prot_H-elongata_contig88673.16382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88673 2181..2657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88673.16382.1

>prot_H-elongata_contig88673.16382.1 ID=prot_H-elongata_contig88673.16382.1|Name=mRNA_H-elongata_contig88673.16382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
DIVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNL
YSFVLDLGADGYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTG
ITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA
IGGNKYISK
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mRNA from alignment at H-elongata_contig88673:2181..2657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88673.16382.1 ID=mRNA_H-elongata_contig88673.16382.1|Name=mRNA_H-elongata_contig88673.16382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig88673:2181..2657+ (Himanthalia elongata Himel1 dioecious)
GATATCGTGGTGGTGCCCGGGATTGGGCGCAACTTGTTCTCGGTGATAAC
AGAACCCAAAAAGAGCATTGTCACCATCTTTGACTTCGAAAATCCCAGAC
TGGAGGAATTCAACGTCACCGTGCCGCTACGGAGCGAGAGCGGCAACCTC
TACTCGTTCGTGCTGGACTTGGGTGCGGACGGATATAGCGCCAAGGAGCT
AGCAATGAACGCAGTCGCCAATGCCCAGGTGTGGCACCGACGGCTGGGTC
ATCTCCATGCGCAGGGCCTGGACATTCTACGCAAGCGATACGGCACTGGC
ATCACCTTCGAGGGGGCCATCTCGGACTGCGGTGTTTGCGCCGTGGGGAA
GGCTCAGCAGCTTGCTCATCCCAAGACGGCCAATCACAAGGTCAACCGGC
CTTTCCAGCTGTGCTACGGAGACCTGATGGGGCCCTTCACGCCTGTGGCC
ATAGGCGGCAACAAATACATCAGCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig88673:2181..2657+

>mRNA_H-elongata_contig88673.16382.1 ID=mRNA_H-elongata_contig88673.16382.1|Name=mRNA_H-elongata_contig88673.16382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig88673:2181..2657+ (Himanthalia elongata Himel1 dioecious)
GATATCGTGGTGGTGCCCGGGATTGGGCGCAACTTGTTCTCGGTGATAAC
AGAACCCAAAAAGAGCATTGTCACCATCTTTGACTTCGAAAATCCCAGAC
TGGAGGAATTCAACGTCACCGTGCCGCTACGGAGCGAGAGCGGCAACCTC
TACTCGTTCGTGCTGGACTTGGGTGCGGACGGATATAGCGCCAAGGAGCT
AGCAATGAACGCAGTCGCCAATGCCCAGGTGTGGCACCGACGGCTGGGTC
ATCTCCATGCGCAGGGCCTGGACATTCTACGCAAGCGATACGGCACTGGC
ATCACCTTCGAGGGGGCCATCTCGGACTGCGGTGTTTGCGCCGTGGGGAA
GGCTCAGCAGCTTGCTCATCCCAAGACGGCCAATCACAAGGTCAACCGGC
CTTTCCAGCTGTGCTACGGAGACCTGATGGGGCCCTTCACGCCTGTGGCC
ATAGGCGGCAACAAATACATCAGCAAAGATATCGTGGTGGTGCCCGGGAT
TGGGCGCAACTTGTTCTCGGTGATAACAGAACCCAAAAAGAGCATTGTCA
CCATCTTTGACTTCGAAAATCCCAGACTGGAGGAATTCAACGTCACCGTG
CCGCTACGGAGCGAGAGCGGCAACCTCTACTCGTTCGTGCTGGACTTGGG
TGCGGACGGATATAGCGCCAAGGAGCTAGCAATGAACGCAGTCGCCAATG
CCCAGGTGTGGCACCGACGGCTGGGTCATCTCCATGCGCAGGGCCTGGAC
ATTCTACGCAAGCGATACGGCACTGGCATCACCTTCGAGGGGGCCATCTC
GGACTGCGGTGTTTGCGCCGTGGGGAAGGCTCAGCAGCTTGCTCATCCCA
AGACGGCCAATCACAAGGTCAACCGGCCTTTCCAGCTGTGCTACGGAGAC
CTGATGGGGCCCTTCACGCCTGTGGCCATAGGCGGCAACAAATACATCAG
CAAA
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