prot_H-elongata_contig8867.16381.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8867.16381.1
Unique Nameprot_H-elongata_contig8867.16381.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length570
Homology
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BLAST of mRNA_H-elongata_contig8867.16381.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.180e-59
Identity = 129/276 (46.74%), Postives = 163/276 (59.06%), Query Frame = 0 
Query:  213 PVGGLECASVTVSNTDGLNGIY----EWGASDTFFSTGATNATIASSQXXXXXXXXXXXXTCLITKWAITS-DVE-TLPTYYTYDEAENPAQITEVWLRV-NCSTE-CESYPAEVLVVCGDGSTSGGSSPTPSPVTVTSTDCGIVEVVGTSGGELDGTYYDDGSPLQGEVTLFNGYDA--SDLTSNGNTLAANWTTGDCSGPSSTVAETDGYCLWRQWRITPGDDNFDAFEYFTFDEADHPVDVTSGGLWYTLKTIEEPYAGAINITCAPAVTPAL 478
            P+GG  C +VTVSN   LNG Y        S  + STG   ATI+SS              C + +W I   D + TLPTY+ YDEA +P+ I EVWLR+ NC T  C+S PAE+ ++CGDG+T+ GS  TP+P +VT++DCG++EV GTSG E DG YYDDGS L  +VT + GYD    +L SNG  + AN     C+  SS+       C WRQW I           YFT+DEADHPVD+ +G LWYT      PY GA+ +TCAPA TP L
Sbjct:  269 PIGGPACGNVTVSNAGDLNGDYASSLNGDGSVMYVSTGVIAATISSSAAPAQCADSTASD-CNVNRWQIAPLDADSTLPTYWVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTILCGDGTTASGSG-TPAPASVTASDCGVIEVAGTSGAESDGFYYDDGSELGDDVTQYGGYDVVNGELMSNGRAVVANRVNSTCATTSSSTGADA--CSWRQWWIEASSSG--TVSYFTYDEADHPVDIAAGALWYTSDGSIMPYDGAVAVTCAPATTPTL 538
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BLAST of mRNA_H-elongata_contig8867.16381.1 vs. uniprot
Match: D7G7P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.220e-56
Identity = 125/263 (47.53%), Postives = 155/263 (58.94%), Query Frame = 0 
Query:  224 VSNTDGLNGIY----EWGASDTFFSTGATNATIASSQXXXXXXXXXXXXTCLITKWAIT-SDVE-TLPTYYTYDEAENPAQITEVWLRV-NCSTE-CESYPAEVLVVCGDGSTSGGSSPTPSPVTVTSTDCGIVEVVGTSGGELDGTYYDDGSPLQGEVTLFNGYDA--SDLTSNGNTLAANWTTGDCSGPSSTVAETDGYCLWRQWRITPGDDNFDAFEYFTFDEADHPVDVTSGGLWYTLKTIEEPYAGAINITCAPAVTP 476
            VSN   LNG Y        S T+ STG   AT+ASS              C + +W IT SD + TLPTY  YDEA +P+ I EVWLR+ NC T  C+S PAE+ +VCGDG+T+ GS  TP+PV+VT++DC  +EV GTSG E DG YYDDGS L   VT + GYD    +LTSNG  + AN     C+  ++T +     C WRQW I P         YFT+DEA HPVD+ +G LWYT      PY G + +TCAPA TP
Sbjct:    3 VSNAGDLNGDYASSLNGDGSVTYVSTGVIAATLASSDAPAQCADSSASD-CTVNRWQITPSDADSTLPTYVVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTIVCGDGTTAAGSG-TPAPVSVTASDCEAIEVAGTSGAESDGFYYDDGSELGDGVTQYVGYDVVNGELTSNGRAVVANRVDSTCA--TTTTSTGADACSWRQWWIEPSSSG--TVSYFTYDEAGHPVDIAAGTLWYTSDDTVVPYDGDVVVTCAPATTP 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8867.16381.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTK7_9PHAE2.180e-5946.74F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
D7G7P1_ECTSI1.220e-5647.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..525
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 526..546
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 547..569
NoneNo IPR availableTMHMMTMhelixcoord: 523..545

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8867contigH-elongata_contig8867:599..4939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8867.16381.1mRNA_H-elongata_contig8867.16381.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8867 581..5738 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8867.16381.1 ID=prot_H-elongata_contig8867.16381.1|Name=mRNA_H-elongata_contig8867.16381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=570bp
MFQRAIADAKELMGVIAVASRSLQRRRNNNSPWGIGVAFHENILRVISLA
GTELFIMYKTPDSHSEHLTAFPSVREVLVRGFSFHSKCTQGTRSPARPCV
VLSSHVCNAPMLVVVFLFPLCFDPCSLSLFCHFRFMCKKALVLMLLARCS
LERVQIDIYVDFGTPSPASVNISPTGATPAPATSSAPSSFPTDASLSPSS
PMTTLAPTAASTPVGGLECASVTVSNTDGLNGIYEWGASDTFFSTGATNA
TIASSQSTSAVCADSASTTCLITKWAITSDVETLPTYYTYDEAENPAQIT
EVWLRVNCSTECESYPAEVLVVCGDGSTSGGSSPTPSPVTVTSTDCGIVE
VVGTSGGELDGTYYDDGSPLQGEVTLFNGYDASDLTSNGNTLAANWTTGD
CSGPSSTVAETDGYCLWRQWRITPGDDNFDAFEYFTFDEADHPVDVTSGG
LWYTLKTIEEPYAGAINITCAPAVTPALPTPTPTTSIPVVIPTVGTTTSP
TAVENITDEGTSEGQNSSEGTNYTPAIIGGVIGGVAVLGLVGFVAYRRMN
TPSAPPPPPPSYNDLVQDS*
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