mRNA_H-elongata_contig88666.16380.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 150 bits (378), Expect = 5.410e-41 Identity = 86/209 (41.15%), Postives = 132/209 (63.16%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFF 603
FNV T A +G N IGH + ++++ C+A+GCD+IGLQ+T+R+G I GY + +SG +G K ++G H VG+AIK+ I V + +ECIS L+K R+ + VTFVV YAPTE ++T G K L+ + V +R+++ +L+ ANARTG+ G +A+ ++G GRD++N NG+ +L A DN+L+L NT+F
Sbjct: 14 FNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDGCCDAK--IMGANGRDIMNNNGERLLELASDNQLSLTNTYF 220
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 155 bits (392), Expect = 7.880e-41 Identity = 88/210 (41.90%), Postives = 135/210 (64.29%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R G I GY + +SG +G K ++G H VG+AIK+ + V + +ECIS L+K R+ + VTF+V YAPTE + TEG K L+ + V +R+++ +L++ANARTG+ G +A+ ++G YGRD++N NG+ +L A DN+L+L NT+FR
Sbjct: 180 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR 387
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.970e-40 Identity = 90/210 (42.86%), Postives = 136/210 (64.76%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTEQA--TEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
FNVRT A +G N IGH + ++++ CAA+ CD+IGLQ+T+R G IT GY + +SG +G K ++G H VG+AIK+ + + V + +ECIS L+K R+ + VTFVV YAPTE A T G K L+ + V +R+++ +L++ANARTG+ G +A+ ++G YGRD++N NG+ +L A DN+L+L+NT+FR
Sbjct: 95 FNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLAADNRLSLINTYFR 302
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 149 bits (375), Expect = 5.310e-40 Identity = 84/210 (40.00%), Postives = 133/210 (63.33%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R+G I GY + +SG +G K ++G H VG+AIK+ + V + +ECI L+K R+ + +TFVV YAPTE + T G K L+ + V + +++ +L++ANARTG+ G +A+ ++G YGRD++N NG+ +L A +N+L+L NT+FR
Sbjct: 153 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCCDAK--IMGVYGRDIMNNNGERLLGLASNNQLSLTNTYFR 360
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 149 bits (376), Expect = 2.860e-39 Identity = 85/210 (40.48%), Postives = 131/210 (62.38%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R G I GY + +SG +G K ++G H VG+ IK+ + V + +ECI L+K R+ + V FVV YAPTE + T G K L+ + V +R+++ +L++ANARTG+ G +A+ ++G YGRD++N NG+ +L A DN+L+L NT+FR
Sbjct: 86 FNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR 293
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 152 bits (385), Expect = 3.100e-39 Identity = 87/210 (41.43%), Postives = 134/210 (63.81%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
FNV T A +G N IGH + ++++ C+A+GCD+IGLQ+T+R+G I GY + +SG +G K ++G H VG+AIK+ + V + +ECIS L+K R+ + VTFVV YAPTE + T G K L+ + V +R+++ +L++ANARTG+ G +A+ ++G YGRD++N NG+ +L A DN+L+L NT+FR
Sbjct: 662 FNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR 869
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 150 bits (379), Expect = 8.100e-39 Identity = 86/208 (41.35%), Postives = 132/208 (63.46%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTF 600
FNVRT A +G N IGH + ++++ C+A+GCD+IGLQ+T+R G I GY + +SG +G K ++G H VG+AIK+ + V + +ECIS L+K R+ + VTFVV YAPTE + T G K L+ + V +R+++ +L++ANARTG+ G +A+ ++G YGRD++N NG+ +L A DN+L+L NT+
Sbjct: 91 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAK--IMGAYGRDIMNNNGERLLGLASDNQLSLTNTY 296
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE) HSP 1 Score: 149 bits (376), Expect = 3.960e-38 Identity = 84/210 (40.00%), Postives = 133/210 (63.33%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGH-IDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSNL-VTFVVAYAPTE--QATEG----QKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFFR 606
FNVRT A +G N IGH + ++++ C+A+GCD++GL +T+R+G I GY + +SG +G K ++G H +G+AIK+ + V + +ECIS L+K R+ + VTFVV YAPTE + T G K L+ + V +R+++ +L++ANARTG+ G A+ ++G YGRD++N +G+ +L A DN+L+L NT+FR
Sbjct: 42 FNVRTLAYSGRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHDGYVIIWSGARAGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCNAK--IMGAYGRDIMNNSGERLLGLASDNQLSLTNTYFR 249
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 149 bits (375), Expect = 7.090e-38 Identity = 88/203 (43.35%), Postives = 125/203 (61.58%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGHIDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSN--LVTFVVAYAPTEQATEGQKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFF 603
+NVRT AVNG NG G DS+L A G +GLQ+ +R G ++ ASG+R++ G G G H VG+A+++ + + E + L+ R M + VTFV AYAPT+ AT K L++ V + A+EY+F+L++ANA+TG GG + E E T +GEYGR+ LNENG+L+L+FA DN+LA+LNTFF
Sbjct: 311 YNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKS---SQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG--GGIAGENEGT-MGEYGRNELNENGELLLTFATDNRLAVLNTFF 502
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.740e-37 Identity = 88/203 (43.35%), Postives = 124/203 (61.08%), Query Frame = 1
Query: 1 FNVRTAAVNGVNGIGHIDSLLRPCAASGCDIIGLQKTKRDGASDITASGYRLYFSGDFSGAKGEKGQHRVGLAIKDEIVNKVSKNDIAIECISASLLKARISMKSN--LVTFVVAYAPTEQATEGQKAKHIATLNNTVSSVSAREYVFILINANARTGKMGGGSEEAESTVLGEYGRDVLNENGKLMLSFAEDNKLALLNTFF 603
+NVRT AVNG NG G DS+L A G +GLQ+ +R G ++ ASG+R++ G G G H VG+A+++ + + E + L+ R M + VTFV AYAPT+ AT K L++ V A+EY+F+L++ANA+TG GG + E E T +GEYGR+ LNENG+L+L+FA DN+LA+LNTFF
Sbjct: 24 YNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKG-----GTHGVGIAVEETLCKS---SQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG--GGIAGENEGT-MGEYGRNELNENGELLLTFATDNRLAVLNTFF 215 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88666.16380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88666.16380.1 >prot_H-elongata_contig88666.16380.1 ID=prot_H-elongata_contig88666.16380.1|Name=mRNA_H-elongata_contig88666.16380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp FNVRTAAVNGVNGIGHIDSLLRPCAASGCDIIGLQKTKRDGASDITASGYback to top mRNA from alignment at H-elongata_contig88666:1999..2604- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88666.16380.1 ID=mRNA_H-elongata_contig88666.16380.1|Name=mRNA_H-elongata_contig88666.16380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig88666:1999..2604- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88666:1999..2604- >mRNA_H-elongata_contig88666.16380.1 ID=mRNA_H-elongata_contig88666.16380.1|Name=mRNA_H-elongata_contig88666.16380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig88666:1999..2604- (Himanthalia elongata Himel1 dioecious)back to top |