prot_H-elongata_contig88572.16378.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88572.16378.1
Unique Nameprot_H-elongata_contig88572.16378.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length125
Homology
[Close]
BLAST of mRNA_H-elongata_contig88572.16378.1 vs. uniprot
Match: D7G7W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W5_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 3.980e-9
Identity = 47/112 (41.96%), Postives = 55/112 (49.11%), Query Frame = 0 
Query:    6 LTRKEKLELWRAKKGG---GHNTLSSV-------------------SSSSGNDVLARRPGAGNGTERPASRKTKESITRQPFQVDMRVVREASERRVAPGTPIHSLKKRLKR 95
            L+RKEKL  WRA KG     H   +                            VL  RPGAGN   +  +        R+PFQVD R +++ASERRV PGTPIHSLKKRLKR
Sbjct:    5 LSRKEKLAAWRAAKGKPLEAHKPAAXXXXXXXXXXXXXXXXXGRAGKKDVAKGVLQARPGAGNRVNKRTA-----PPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKR 111
[Close]
BLAST of mRNA_H-elongata_contig88572.16378.1 vs. uniprot
Match: A0A6H5L268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L268_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.020e-9
Identity = 48/116 (41.38%), Postives = 56/116 (48.28%), Query Frame = 0 
Query:    6 LTRKEKLELWRAKKG--------------------------GGHNTLSSVSSSSGNDVLARRPGAGNGTERPASRKTKESITRQPFQVDMRVVREASERRVAPGTPIHSLKKRLKR 95
            L+RKEKL  WRA KG                           G      V+      VL  RPGAGN   +  +        R+PFQVD R +++ASERRV PGTPIHSLKKRLKR
Sbjct:    5 LSRKEKLAAWRAAKGKPLEAHKAAXXXXXXXXXXXXXXXXXXGRAGKKDVAKG----VLQARPGAGNMVNKRTA-----PPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKR 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88572.16378.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W5_ECTSI3.980e-941.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L268_9PHAE8.020e-941.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88572contigH-elongata_contig88572:616..1245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88572.16378.1mRNA_H-elongata_contig88572.16378.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88572 503..1245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88572.16378.1 ID=prot_H-elongata_contig88572.16378.1|Name=mRNA_H-elongata_contig88572.16378.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MEGRGLTRKEKLELWRAKKGGGHNTLSSVSSSSGNDVLARRPGAGNGTER
PASRKTKESITRQPFQVDMRVVREASERRVAPGTPIHSLKKRLKRPGDEN
APAQAQDCKKEADHAAQKTESANVD
back to top