mRNA_H-elongata_contig88572.16378.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88572.16378.1
Unique NamemRNA_H-elongata_contig88572.16378.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88572.16378.1 vs. uniprot
Match: D7G7W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.290e-9
Identity = 47/112 (41.96%), Postives = 55/112 (49.11%), Query Frame = 3 
Query:  129 LTRKEKLELWRAKKGG---GHNTLSSV-------------------SSSSGNDVLARRPGAGNGTERPASRKTKESITRQPFQVDMRVVREASERRVAPGTPIHSLKKRLKR 398
            L+RKEKL  WRA KG     H   +                            VL  RPGAGN   +  +        R+PFQVD R +++ASERRV PGTPIHSLKKRLKR
Sbjct:    5 LSRKEKLAAWRAAKGKPLEAHKPAAXXXXXXXXXXXXXXXXXGRAGKKDVAKGVLQARPGAGNRVNKRTA-----PPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKR 111
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BLAST of mRNA_H-elongata_contig88572.16378.1 vs. uniprot
Match: A0A6H5L268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L268_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-8
Identity = 48/116 (41.38%), Postives = 56/116 (48.28%), Query Frame = 3 
Query:  129 LTRKEKLELWRAKKG--------------------------GGHNTLSSVSSSSGNDVLARRPGAGNGTERPASRKTKESITRQPFQVDMRVVREASERRVAPGTPIHSLKKRLKR 398
            L+RKEKL  WRA KG                           G      V+      VL  RPGAGN   +  +        R+PFQVD R +++ASERRV PGTPIHSLKKRLKR
Sbjct:    5 LSRKEKLAAWRAAKGKPLEAHKAAXXXXXXXXXXXXXXXXXXGRAGKKDVAKG----VLQARPGAGNMVNKRTA-----PPQRKPFQVDTRSIQQASERRVQPGTPIHSLKKRLKR 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88572.16378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W5_ECTSI6.290e-941.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L268_9PHAE1.310e-841.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88572contigH-elongata_contig88572:503..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size488
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88572.16378.1prot_H-elongata_contig88572.16378.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88572 616..1245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.335019-UTR-H-elongata_contig88572:502..6151622931287.335019-UTR-H-elongata_contig88572:502..615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88572 503..615 +
1691679774.440037-UTR-H-elongata_contig88572:502..6151691679774.440037-UTR-H-elongata_contig88572:502..615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88572 503..615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.378739-CDS-H-elongata_contig88572:615..8131622931287.378739-CDS-H-elongata_contig88572:615..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88572 616..813 +
1691679774.4494092-CDS-H-elongata_contig88572:615..8131691679774.4494092-CDS-H-elongata_contig88572:615..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88572 616..813 +
1622931287.402426-CDS-H-elongata_contig88572:1068..12451622931287.402426-CDS-H-elongata_contig88572:1068..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88572 1069..1245 +
1691679774.4588556-CDS-H-elongata_contig88572:1068..12451691679774.4588556-CDS-H-elongata_contig88572:1068..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88572 1069..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88572.16378.1

>prot_H-elongata_contig88572.16378.1 ID=prot_H-elongata_contig88572.16378.1|Name=mRNA_H-elongata_contig88572.16378.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MEGRGLTRKEKLELWRAKKGGGHNTLSSVSSSSGNDVLARRPGAGNGTER
PASRKTKESITRQPFQVDMRVVREASERRVAPGTPIHSLKKRLKRPGDEN
APAQAQDCKKEADHAAQKTESANVD
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mRNA from alignment at H-elongata_contig88572:503..1245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88572.16378.1 ID=mRNA_H-elongata_contig88572.16378.1|Name=mRNA_H-elongata_contig88572.16378.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=743bp|location=Sequence derived from alignment at H-elongata_contig88572:503..1245+ (Himanthalia elongata Himel1 dioecious)
GCCAGGTTAAGACGGTCAGAGTGTTTTGTGTGCATTGATTTGCGTTGTTT
TCCAGGCGCAAAACAGCGGCGTGGGCACGGAAACCAAGTCAACGAAGGAA
ATATAATCATATTATGGAGGGGCGAGGCCTGACACGCAAGGAGAAACTTG
AACTCTGGAGGGCGAAAAAGGGGGGAGGCCATAACACGCTTAGCTCCGTT
AGCTCGAGCTCGGGAAATGATGTCCTCGCCAGGAGGCCGGGTGCAGGTAA
TGGTACCGAGAGGCCAGCCTCGCGTAAGACGAAGGAGAGTATAACGCGCC
AGCCTTTTCAGGTGAGATATTTTGGACCCATCAATCAGCAAATGGTGGTT
CAACGCCTTGGCAAAAAGGATGTCCCAACCGACTCGAACAAATGAGCGGG
AAATTATGAAATTATAAATGACTAAAAGGTCGATTCGAACGTATCCCAGA
GACACAAGACGTAGAGCTAGGTAGACGTCGCCCTTCCGTAGATGACAACA
TTTCGGTAATGGCAACATAACATTAAATATTGAACCCACATCCTCTCTCG
TATCTTTCCATGGAAGGTCGACATGCGCGTCGTACGTGAGGCAAGTGAAC
GGCGGGTCGCCCCAGGTACTCCAATACACTCCCTCAAGAAGCGCCTCAAG
CGCCCGGGGGACGAAAACGCTCCAGCCCAGGCCCAGGATTGTAAAAAAGA
GGCCGATCACGCCGCCCAAAAGACGGAATCTGCCAATGTTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig88572:503..1245+

>mRNA_H-elongata_contig88572.16378.1 ID=mRNA_H-elongata_contig88572.16378.1|Name=mRNA_H-elongata_contig88572.16378.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig88572:503..1245+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGCGAGGCCTGACACGCAAGGAGAAACTTGAACTCTGGAGGGC
GAAAAAGGGGGGAGGCCATAACACGCTTAGCTCCGTTAGCTCGAGCTCGG
GAAATGATGTCCTCGCCAGGAGGCCGGGTGCAGGTAATGGTACCGAGAGG
CCAGCCTCGCGTAAGACGAAGGAGAGTATAACGCGCCAGCCTTTTCAGAT
GGAGGGGCGAGGCCTGACACGCAAGGAGAAACTTGAACTCTGGAGGGCGA
AAAAGGGGGGAGGCCATAACACGCTTAGCTCCGTTAGCTCGAGCTCGGGA
AATGATGTCCTCGCCAGGAGGCCGGGTGCAGGTAATGGTACCGAGAGGCC
AGCCTCGCGTAAGACGAAGGAGAGTATAACGCGCCAGCCTTTTCAGGTCG
ACATGCGCGTCGTACGTGAGGCAAGTGAACGGCGGGTCGCCCCAGGTACT
CCAATACACTCCCTCAAGAAGCGCCTCAAGCGCCCGGGGGACGAAAACGC
TCCAGCCCAGGCCCAGGATTGTAAAAAAGAGGCCGATCACGCCGCCCAAA
AGACGGAATCTGCCAATGTTGACGTCGACATGCGCGTCGTACGTGAGGCA
AGTGAACGGCGGGTCGCCCCAGGTACTCCAATACACTCCCTCAAGAAGCG
CCTCAAGCGCCCGGGGGACGAAAACGCTCCAGCCCAGGCCCAGGATTGTA
AAAAAGAGGCCGATCACGCCGCCCAAAAGACGGAATCTGCCAATGTTGAC
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