mRNA_H-elongata_contig88520.16375.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88520.16375.1
Unique NamemRNA_H-elongata_contig88520.16375.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88520.16375.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.600e-45
Identity = 108/166 (65.06%), Postives = 125/166 (75.30%), Query Frame = 1 
Query:    1 SQTTQVPRGVIDLEAYTDIGVEEATGAIILGPGPD---APPGFRKYYFRPEDARHKKLPPRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVLGKWLSGLHRDRFKVVRDERDAYMNLQEEYMTQMQDTTSAMTEAESERGRLLQGLRAEHAAARATARDGLEQ 489
            S+  +VPRGVIDL+ YT+IGV++ TGAI+LGPG     A  G RK+YF+PE+ R  +           XXXXXXXXXXXXXX         G VLG+WLSGLHR+R+KVVRDERDAYMNLQEEYM+QMQDTTSA TEAE ER R+LQGL+AEHAA RA ARDGLEQ
Sbjct:  137 SKDAEVPRGVIDLDPYTNIGVDQRTGAIVLGPGGSWTVAGQGLRKFYFKPEERRMMRTTAAGGAGANGXXXXXXXXXXXXXXVAKKGDGGGGEVLGEWLSGLHRERYKVVRDERDAYMNLQEEYMSQMQDTTSAKTEAEKERCRVLQGLQAEHAAVRAAARDGLEQ 302
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BLAST of mRNA_H-elongata_contig88520.16375.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.750e-45
Identity = 104/166 (62.65%), Postives = 122/166 (73.49%), Query Frame = 1 
Query:    1 SQTTQVPRGVIDLEAYTDIGVEEATGAIILGPGPD---APPGFRKYYFRPEDARHKKLPPRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVLGKWLSGLHRDRFKVVRDERDAYMNLQEEYMTQMQDTTSAMTEAESERGRLLQGLRAEHAAARATARDGLEQ 489
            S+  +VPRGVIDL+ YT+IGV++ TGAI+LGPG     A  G RK+YF+PE+ R  +               XXXXXXXXXX         G V+G+WLSGLHR+R+KVVRDERDAYMNLQEEYM+QMQDTTSA TEAE ER R+LQGL+AEHAAARA ARDGLEQ
Sbjct:  142 SKDAEVPRGVIDLDPYTNIGVDQRTGAIVLGPGGSWTAAGQGLRKFYFKPEERRVMRATAADGAGANVTAVAXXXXXXXXXXVAKKGDGVGGEVVGEWLSGLHRERYKVVRDERDAYMNLQEEYMSQMQDTTSAKTEAEKERCRVLQGLQAEHAAARAAARDGLEQ 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88520.16375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCP7_ECTSI1.600e-4565.06PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JHM0_9PHAE1.750e-4562.65PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88520contigH-elongata_contig88520:609..2402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D8LCP7
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2E9MN@1,2SFYW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-03_002090.1
Exons3
Model size490
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88520.16375.1prot_H-elongata_contig88520.16375.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88520 610..2402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931287.1081302-CDS-H-elongata_contig88520:609..7441622931287.1081302-CDS-H-elongata_contig88520:609..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88520 610..744 -
1691679774.3844986-CDS-H-elongata_contig88520:609..7441691679774.3844986-CDS-H-elongata_contig88520:609..744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88520 610..744 -
1622931287.1729434-CDS-H-elongata_contig88520:1964..20811622931287.1729434-CDS-H-elongata_contig88520:1964..2081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88520 1965..2081 -
1691679774.3965762-CDS-H-elongata_contig88520:1964..20811691679774.3965762-CDS-H-elongata_contig88520:1964..2081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88520 1965..2081 -
1622931287.1920006-CDS-H-elongata_contig88520:2165..24021622931287.1920006-CDS-H-elongata_contig88520:2165..2402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88520 2166..2402 -
1691679774.4093127-CDS-H-elongata_contig88520:2165..24021691679774.4093127-CDS-H-elongata_contig88520:2165..2402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88520 2166..2402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88520.16375.1

>prot_H-elongata_contig88520.16375.1 ID=prot_H-elongata_contig88520.16375.1|Name=mRNA_H-elongata_contig88520.16375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
SQTTQVPRGVIDLEAYTDIGVEEATGAIILGPGPDAPPGFRKYYFRPEDA
RHKKLPPRSRNRNRNRCSPRRRGGGGEGGEKEEGDGDGGGVLGKWLSGLH
RDRFKVVRDERDAYMNLQEEYMTQMQDTTSAMTEAESERGRLLQGLRAEH
AAARATARDGLEQ
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mRNA from alignment at H-elongata_contig88520:609..2402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88520.16375.1 ID=mRNA_H-elongata_contig88520.16375.1|Name=mRNA_H-elongata_contig88520.16375.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1794bp|location=Sequence derived from alignment at H-elongata_contig88520:609..2402- (Himanthalia elongata Himel1 dioecious)
TCTCAAACGACCCAGGTCCCACGAGGCGTGATCGACCTCGAGGCCTATAC
CGACATCGGGGTGGAAGAGGCCACGGGAGCCATCATCCTCGGGCCTGGAC
CAGACGCTCCCCCAGGGTTCCGAAAGTACTACTTCAGGCCGGAGGACGCA
AGGCATAAGAAACTTCCGCCCCGTTCAAGAAACAGGAACAGAAACAGATG
CAGCCCTAGAAGGAGAGGGGGAGGCGGAGAGGGAGGAGTTGCAGCGAGCG
AAAAATGCGATGGCAGAAGGGGAGTCGGGGATCCTACGGGGGAAGAGAAC
GCCGAAGTTGCCCCTGGCGAGGAGAAGGAGGAAGGGGACGGGGATGGCGG
GGGTGTTCTGGGAAAGTGGCTTTCGGGCTTGCACCGTGACAGGTTTAAGG
TCGTTCGGGACGAAAGGGATGCTTACATGAACCTTCAGGTAGGACACCTC
GATGCTATAATTGGTTACATATGTATAGATATTATATACCGTATAGATAC
CGTATAGATAAACCGCACATATACCATATCTATATATATATATATCCCCT
ATAGATACATGGATACCGTATATATACGGTATATCTATACCGTATAATAA
GTATACCGTATAGATATTGGAAATATAGATCGGCTGACTGTAGAGTTATC
ATGGCGAAGCGAACAAATGGTTTGGGCAATTATATATATATATATATAAA
TATATTATTTTTTCCTCATTTATCCTTTAAGGTAATGTATATAAAGCCTA
GATAGGGTATCCTGGCGTAATATCGATGAGGTACCGTAACCCTAATAGTA
CTATATAGAAAATAGCTGTATTAATAGTACTATACTATATAGAGTACTGT
AATACTGTAATATAGTAGCTAAGGTTATCAAGTACTGTACTATACTATAC
TGCACTGTCCTTGGATATACCTAGCCCCCCCCCACCCCCCCCCTCCCCCC
CCAACACCCCCCCACACCACCCCCCCACCACTAACCACAACAACNNNNNN
NNNNTAGTAGCTAAGGTTATCAAGTACTGTACTATACTATACTGCACTGT
CCTTGGATATACATAGCCCCCCCCCCCCGACTTTTTCAGGTGTCATTGAT
TGACCGTAGGATGAACACACTATTAATAGTATAACCCGTCCCCCCTACAA
AAATATAAACATTATATTTACGAACTCAATTTAGAAATTGTCTCTGAGGA
AGAAAAAAAAGGTCATTTTGATTAAAAATTATATTATAATTGCGCACCTT
GATAAATACGTGAGGAAAACATGACATTGGGCTGCATTCGTTGTATGGAT
TACTGCGTTTTGGAAGGTTTCCCTGGTCTCCCTACTGATAATACTGATAG
TACATTGTGTCCGTATCTAGTGTCCAATTGACCCACGACCTATTGGGTTT
GGCGCTACAATCGCATGGCATGGCATGGCTGATCACAAAAGGCTGTTATC
ATCTTGTGAAACGCAGTCGGGCTGGCGAAAACCCAGCACGATATCGCCAC
GTCATATCGGGGGTAAAGAACATTACTATTAATATTACTGATGTCATTTA
GGATTACCACATGCCTTTTAACATAGTACACCCTCCCCTCCCTCACGAAA
ATGCCCCCGCCTAGTCTAAGCCACCACTTGAACTCCCCTCCGATCTCCCC
GTCTGCAGGAGGAATACATGACGCAGATGCAAGACACGACCTCGGCCATG
ACGGAAGCCGAGAGCGAGCGAGGCCGGCTGCTGCAGGGCCTCAGGGCGGA
ACATGCGGCGGCGAGGGCTACGGCTCGAGATGGTCTAGAGCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig88520:609..2402-

>mRNA_H-elongata_contig88520.16375.1 ID=mRNA_H-elongata_contig88520.16375.1|Name=mRNA_H-elongata_contig88520.16375.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig88520:609..2402- (Himanthalia elongata Himel1 dioecious)
TCTCAAACGACCCAGGTCCCACGAGGCGTGATCGACCTCGAGGCCTATAC
CGACATCGGGGTGGAAGAGGCCACGGGAGCCATCATCCTCGGGCCTGGAC
CAGACGCTCCCCCAGGGTTCCGAAAGTACTACTTCAGGCCGGAGGACGCA
AGGCATAAGAAACTTCCGCCCCGTTCAAGAAACAGGAACAGAAACAGATG
CAGCCCTAGAAGGAGAGGGGGAGGCGGAGAGGGAGGATCTCAAACGACCC
AGGTCCCACGAGGCGTGATCGACCTCGAGGCCTATACCGACATCGGGGTG
GAAGAGGCCACGGGAGCCATCATCCTCGGGCCTGGACCAGACGCTCCCCC
AGGGTTCCGAAAGTACTACTTCAGGCCGGAGGACGCAAGGCATAAGAAAC
TTCCGCCCCGTTCAAGAAACAGGAACAGAAACAGATGCAGCCCTAGAAGG
AGAGGGGGAGGCGGAGAGGGAGGAGAGAAGGAGGAAGGGGACGGGGATGG
CGGGGGTGTTCTGGGAAAGTGGCTTTCGGGCTTGCACCGTGACAGGTTTA
AGGTCGTTCGGGACGAAAGGGATGCTTACATGAACCTTCAGGAGAAGGAG
GAAGGGGACGGGGATGGCGGGGGTGTTCTGGGAAAGTGGCTTTCGGGCTT
GCACCGTGACAGGTTTAAGGTCGTTCGGGACGAAAGGGATGCTTACATGA
ACCTTCAGGAGGAATACATGACGCAGATGCAAGACACGACCTCGGCCATG
ACGGAAGCCGAGAGCGAGCGAGGCCGGCTGCTGCAGGGCCTCAGGGCGGA
ACATGCGGCGGCGAGGGCTACGGCTCGAGATGGTCTAGAGCAGGAGGAAT
ACATGACGCAGATGCAAGACACGACCTCGGCCATGACGGAAGCCGAGAGC
GAGCGAGGCCGGCTGCTGCAGGGCCTCAGGGCGGAACATGCGGCGGCGAG
GGCTACGGCTCGAGATGGTCTAGAGCAG
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