prot_H-elongata_contig88425.16369.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88425.16369.1
Unique Nameprot_H-elongata_contig88425.16369.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE)

HSP 1 Score: 63.9 bits (154), Expect = 1.870e-10
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFE 55
            +A+NR +S+R +H+DIKHH +R+ VD GV+ + YV + EQ+ADILTK +D ++FE
Sbjct:  280 LARNRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADILTKGLDKQSFE 334          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR)

HSP 1 Score: 58.2 bits (139), Expect = 1.180e-9
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEK 56
            ++KN     RT+H+DI+HH +RD V+ GVV +E++ + EQ ADI TK++D   FEK
Sbjct:   21 ISKNPIQHSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEK 76          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY)

HSP 1 Score: 60.5 bits (145), Expect = 3.530e-9
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    6 FSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFE 55
              +RRT+H+DIKHH +RD V+   +HI+Y+ S EQ ADILTKS+ +  FE
Sbjct:  928 LETRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-8
Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKFL 61
            +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F+
Sbjct:  264 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 324          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.160e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 60
            +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F
Sbjct:  193 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFEVHRDF 252          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.190e-8
Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKFL 61
            +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F+
Sbjct:  320 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHRDFV 380          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.230e-8
Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKFL 61
            +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F+
Sbjct:  430 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 490          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A438H3B6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H3B6_VITVI)

HSP 1 Score: 58.5 bits (140), Expect = 1.670e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKFL 61
            ++KN     RT+HVDI+HH +RD V+  VV +EYV +  Q ADILTK +DV  FE   KF+
Sbjct:  461 ISKNPVLHSRTKHVDIRHHFIRDLVENKVVSLEYVPTEGQIADILTKPLDVSRFESLKKFI 521          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.690e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKF 60
            +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F
Sbjct:  895 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDF 954          
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.690e-8
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0
Query:    3 KNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVDVKTFEKHAKFL 61
            KN  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++    FE H  F+
Sbjct:  911 KNPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVHRDFV 969          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88425.16369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9YPH4_LYGHE1.870e-1052.73Copia protein n=1 Tax=Lygus hesperus TaxID=30085 R... [more]
A0A2K3K827_TRIPR1.180e-948.21Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium p... [more]
A0A1Y1MJE9_PHOPY3.530e-954.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KBM6_9PHAE1.120e-844.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCG6_9PHAE1.160e-845.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE1.190e-844.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE1.230e-844.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A438H3B6_VITVI1.670e-850.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KKK1_9PHAE1.690e-845.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5J594_9PHAE1.690e-845.76Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88425contigH-elongata_contig88425:1049..1231 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88425.16369.1mRNA_H-elongata_contig88425.16369.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88425 1028..1231 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88425.16369.1 ID=prot_H-elongata_contig88425.16369.1|Name=mRNA_H-elongata_contig88425.16369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MAKNRFSSRRTRHVDIKHHNVRDAVDGGVVHIEYVLSWEQHADILTKSVD
VKTFEKHAKFL
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