mRNA_H-elongata_contig88411.16367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88411.16367.1
Unique NamemRNA_H-elongata_contig88411.16367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: A0A6H5KDI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.440e-7
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   31 LTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
             T+P GDE+ S+GGS+GEFPGDLADYDE      ++  + S   N+   K  E   R +LK VF LVQ T
Sbjct:  408 CTEPEGDEEMSDGGSDGEFPGDLADYDE-----PSVTIKSSQQINAMVDKKPEGWGRAALKFVFELVQHT 472          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.510e-7
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   22 AQELTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
            A+   +P GD+D S+GGSEGEFPGD ADYD++    V +  +      +   KIQE  A+E+L  +F LVQ T
Sbjct:  501 AEYEQEPEGDDDMSDGGSEGEFPGDAADYDQD----VFVSGKSPQQVKAMVDKIQEAWAKEALTFIFGLVQNT 569          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: D7FZ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ42_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.530e-6
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 RGAGGG--AAQELTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
            RG  GG    + + +P GDE+ S+GGS+GEFPGDLADYDE      ++  +     N+   KI E   + +LK VF LVQ T
Sbjct:  437 RGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDE-----PSVTIKSPQQINAMVDKIPEGWGKAALKFVFELVQHT 513          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: D7G347_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G347_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.250e-6
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 RGAGGG--AAQELTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
            RG  GG    + + +P GDE+ S+GGS+GEFPGDLADYDE      ++  +     N+   KI E     +LK VF LVQ T
Sbjct:  102 RGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDE-----PSVTIKSPQQINAMVDKIPEGWGMAALKFVFELVQHT 178          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: A0A6H5K3B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.270e-6
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   22 AQELTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
            A+   +P GD+D S+GGSEGEFPGD ADYD++    V +  +      +   KIQE   +E+L  +F L Q T
Sbjct:  355 AEYEQEPEGDDDMSDGGSEGEFPGDAADYDQD----VFVSGKSPQQVKAMVDKIQEAWGKEALTFIFGLAQNT 423          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.020e-5
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   25 QELTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQ 234
            Q   DP GDE+ S+GGS+GEFPGDLADYDE      ++  +     N+   KI E   + +LK VF  VQ
Sbjct:  580 QYAQDPEGDEEMSDGGSDGEFPGDLADYDE-----PSVTIKSPQQINAMVYKIPEGWGKAALKFVFEFVQ 644          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: A0A6H5K9N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N7_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.870e-5
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   31 LTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
            + DP GDED S+GGS+GEFPG LA+YDE      ++  +     N+   KI E   + +L+ VF LVQ T
Sbjct:  310 VQDPEGDEDMSDGGSDGEFPGGLANYDE-----PSVTIKSPQQINAMVDKIPEGWGKPALRFVFELVQHT 374          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: A0A6H5JFP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP3_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 6.490e-5
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   46 GDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
            GD+D S+GGSEGEFPGD  DYD++    V +  +      +   KIQE   +E+L  +F LVQ T
Sbjct:  416 GDDDMSDGGSEGEFPGDAVDYDQD----VFVSGKSPQQVKAMVDKIQEAWGKEALAFIFGLVQNT 476          
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 6.670e-5
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   46 GDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRDSAAQNSACSKIQERLARESLKCVFRLVQAT 240
            G+ D S+GGSEGEFPGD ADYD++    V +  +     N+   KIQE   +E+L  +F L+Q T
Sbjct:  432 GNHDMSDGGSEGEFPGDAADYDQD----VFVSGKSPQQVNAMVDKIQEAWGKEALTFIFGLMQNT 492          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88411.16367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KDI1_9PHAE4.440e-748.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIB8_9PHAE4.510e-745.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ42_ECTSI1.530e-643.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G347_ECTSI2.250e-643.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3B3_9PHAE5.270e-642.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVH8_9PHAE1.020e-545.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9N7_9PHAE1.870e-544.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFP3_9PHAE6.490e-544.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFU5_9PHAE6.670e-544.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88411contigH-elongata_contig88411:97..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931285.9615004-CDS-H-elongata_contig88411:96..3361622931285.9615004-CDS-H-elongata_contig88411:96..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88411 97..336 -
1691679773.795872-CDS-H-elongata_contig88411:96..3361691679773.795872-CDS-H-elongata_contig88411:96..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88411 97..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88411.16367.1prot_H-elongata_contig88411.16367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88411 97..336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88411.16367.1

>prot_H-elongata_contig88411.16367.1 ID=prot_H-elongata_contig88411.16367.1|Name=mRNA_H-elongata_contig88411.16367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RGAGGGAAQELTDPVGDEDQSEGGSEGEFPGDLADYDENGEEQVALGKRD
SAAQNSACSKIQERLARESLKCVFRLVQAT
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mRNA from alignment at H-elongata_contig88411:97..336-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88411.16367.1 ID=mRNA_H-elongata_contig88411.16367.1|Name=mRNA_H-elongata_contig88411.16367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig88411:97..336- (Himanthalia elongata Himel1 dioecious)
CGCGGCGCAGGGGGCGGTGCTGCGCAGGAACTGACAGACCCTGTAGGGGA CGAGGATCAGAGTGAGGGGGGCAGTGAAGGGGAGTTTCCCGGTGACCTGG CAGACTACGACGAAAATGGGGAGGAGCAGGTTGCCTTGGGAAAGCGAGAC TCAGCGGCACAGAACAGTGCGTGTAGTAAGATCCAAGAACGTTTGGCGCG CGAGTCTTTGAAGTGCGTGTTCCGCTTAGTCCAAGCTACC
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Coding sequence (CDS) from alignment at H-elongata_contig88411:97..336-

>mRNA_H-elongata_contig88411.16367.1 ID=mRNA_H-elongata_contig88411.16367.1|Name=mRNA_H-elongata_contig88411.16367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig88411:97..336- (Himanthalia elongata Himel1 dioecious)
CGCGGCGCAGGGGGCGGTGCTGCGCAGGAACTGACAGACCCTGTAGGGGA
CGAGGATCAGAGTGAGGGGGGCAGTGAAGGGGAGTTTCCCGGTGACCTGG
CAGACTACGACGAAAATGGGGAGGAGCAGGTTGCCTTGGGAAAGCGAGAC
TCAGCGGCACAGAACAGTGCGTGTAGTAAGATCCAAGAACGTTTGGCGCG
CGAGTCTTTGAAGTGCGTGTTCCGCTTAGTCCAAGCTACCCGCGGCGCAG
GGGGCGGTGCTGCGCAGGAACTGACAGACCCTGTAGGGGACGAGGATCAG
AGTGAGGGGGGCAGTGAAGGGGAGTTTCCCGGTGACCTGGCAGACTACGA
CGAAAATGGGGAGGAGCAGGTTGCCTTGGGAAAGCGAGACTCAGCGGCAC
AGAACAGTGCGTGTAGTAAGATCCAAGAACGTTTGGCGCGCGAGTCTTTG
AAGTGCGTGTTCCGCTTAGTCCAAGCTACC
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