mRNA_H-elongata_contig88393.16364.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88393.16364.1
Unique NamemRNA_H-elongata_contig88393.16364.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88393.16364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88393contigH-elongata_contig88393:2129..2425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88393.16364.1prot_H-elongata_contig88393.16364.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88393 2129..2352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931285.2921689-CDS-H-elongata_contig88393:2128..21581622931285.2921689-CDS-H-elongata_contig88393:2128..2158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88393 2129..2158 +
1691679773.4195487-CDS-H-elongata_contig88393:2128..21581691679773.4195487-CDS-H-elongata_contig88393:2128..2158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88393 2129..2158 +
1622931285.3089027-CDS-H-elongata_contig88393:2193..23521622931285.3089027-CDS-H-elongata_contig88393:2193..2352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88393 2194..2352 +
1691679773.4283297-CDS-H-elongata_contig88393:2193..23521691679773.4283297-CDS-H-elongata_contig88393:2193..2352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88393 2194..2352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931285.3302104-UTR-H-elongata_contig88393:2352..24251622931285.3302104-UTR-H-elongata_contig88393:2352..2425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88393 2353..2425 +
1691679773.437606-UTR-H-elongata_contig88393:2352..24251691679773.437606-UTR-H-elongata_contig88393:2352..2425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88393 2353..2425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88393.16364.1

>prot_H-elongata_contig88393.16364.1 ID=prot_H-elongata_contig88393.16364.1|Name=mRNA_H-elongata_contig88393.16364.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
KIIVVVAVYKTATGLQAHHACYKERRLSRRQTRAAVRADEGRLLERLVFD
PASSLLKSEIDS*
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mRNA from alignment at H-elongata_contig88393:2129..2425+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88393.16364.1 ID=mRNA_H-elongata_contig88393.16364.1|Name=mRNA_H-elongata_contig88393.16364.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig88393:2129..2425+ (Himanthalia elongata Himel1 dioecious)
AAAATAATAGTAGTAGTAGCGGTGTACAAGGCTTGATCGTTTTGTGGCGA
GCAGCGGTGCCGGAGACGGCAACTGGTCTTCAGGCTCATCATGCATGCTA
CAAAGAAAGGCGATTGAGCCGGAGGCAGACGCGCGCCGCTGTACGTGCCG
ACGAAGGGAGATTATTGGAGCGGCTTGTGTTCGACCCCGCTTCATCTCTT
CTCAAAAGTGAGATCGATTCCTGAGGAATCAGCTTGCGTCGGTATTGGTT
CATAATCTCGTAAAAACGAGAGAGATATAGCAGAAGCGACATTTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig88393:2129..2425+

>mRNA_H-elongata_contig88393.16364.1 ID=mRNA_H-elongata_contig88393.16364.1|Name=mRNA_H-elongata_contig88393.16364.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig88393:2129..2425+ (Himanthalia elongata Himel1 dioecious)
AAAATAATAGTAGTAGTAGCGGTGTACAAGAAAATAATAGTAGTAGTAGC
GGTGTACAAGACGGCAACTGGTCTTCAGGCTCATCATGCATGCTACAAAG
AAAGGCGATTGAGCCGGAGGCAGACGCGCGCCGCTGTACGTGCCGACGAA
GGGAGATTATTGGAGCGGCTTGTGTTCGACCCCGCTTCATCTCTTCTCAA
AAGTGAGATCGATTCCTGAACGGCAACTGGTCTTCAGGCTCATCATGCAT
GCTACAAAGAAAGGCGATTGAGCCGGAGGCAGACGCGCGCCGCTGTACGT
GCCGACGAAGGGAGATTATTGGAGCGGCTTGTGTTCGACCCCGCTTCATC
TCTTCTCAAAAGTGAGATCGATTCCTGA
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