mRNA_H-elongata_contig88377.16363.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: D7G616_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G616_ECTSI) HSP 1 Score: 206 bits (523), Expect = 3.660e-57 Identity = 127/267 (47.57%), Postives = 150/267 (56.18%), Query Frame = 1
Query: 1 LAGAGLGDVQLAWDFVTASEEAQLGALRAMRDVTMVWLDEMLSRAGAGGNAGMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRRKTRSTEVKGPMHSLYRVLKVAESSSSPQD-------------PIARTVWARMRVPAFVSPVSRGFGLVWSGLG--GDSNGDVGFVVRVPRCVASGKRTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPELLLAGVPEDLMQ 756
L GAGLGDVQLAWDFVTASE QLG LR+MR+ + WL+ L+ G +RR+ S + +LYRV+ V ES+ D I RTVW R+R PAF SP SRG GL + ++N DV FVVRVPRCVA G++ P ++Q+GHGLFGDR+EV DGFL +AERGAWVLVAADWRGMS+IDL VAR LVS PELLLAG PEDLMQ
Sbjct: 629 LVGAGLGDVQLAWDFVTASEGGQLGVLRSMRETSKAWLEAALTSTGPTSAKLPPRHLRESVDLSGGIPAGVAGHRDRDRGGFSGSEGSGSGREGGRRRRVTSDGQQPASAALYRVVSVEESADYNNDGDDDGGGFNAEHPAIVRTVWGRLRAPAFTSPSSRGAGLETTPTTTTANNNDDVRFVVRVPRCVALGRKRPAALVQYGHGLFGDRAEVEDGFLDLMAERGAWVLVAADWRGMSRIDLAVVARALVSAPELLLAGTPEDLMQ 895
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A835Z5S3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5S3_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.370e-28 Identity = 95/288 (32.99%), Postives = 126/288 (43.75%), Query Frame = 1
Query: 4 AGAGLGDVQLAWDFVTASEEAQLGALRAMRDVTMVWLDEMLSRAGAGGNAGMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRRKTRSTEVKGPMHSLYRVLKVAESSSSPQDPIARTVWARMRVPAFVSPVSRGFGLVWSGLGGDSNG----------------------------DVGFVVR------VPRCVASGKRTP---TRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPELLLAGVPEDLMQ 756
AG +G +QLAWDF TAS EAQ G L+ MR E +R A A + LY++++V E PQ + T W + VPA+VSP R GL + L D +VGFVVR VPRC+A P T V+Q+GHGLFGDR+E+LDG+LG+LA+ G W+ VA DWRGMS+ DLI VAR L+S P+ ++ + ++LMQ
Sbjct: 520 AGVDVGALQLAWDFTTASAEAQTGMLQGMRA-------EATARFEAAAAASV--------------------------------------------------------EPLYKIVRVDED---PQSVVPVTFWGTVSVPAYVSPTHRAGGLRRAALRKDGGSVNLNIGNATAMRQAAADMLRHGPGGEALEVGFVVRXXXXXXVPRCLAPNSTAPAGVTAVVQYGHGLFGDRAELLDGYLGKLADEGGWLTVATDWRGMSRFDLIFVARALLSDPDSIMEAMVDNLMQ 741
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A7S2S651_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S651_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.070e-13 Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 493 VGFVVRVPRCVASGKRTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPE 720
VG+V +P C + +P ++Q+GHG+F +RSEV D +L LA+R W LVA DWRGMS+ DL VAR ++++PE
Sbjct: 14 VGWVAVLP-CSVIARGSPREIVQYGHGVFDNRSEVTDSWLVALAQREEWALVATDWRGMSRFDLPVVARAMLAQPE 88
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A2P6MZW1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MZW1_9EUKA) HSP 1 Score: 73.2 bits (178), Expect = 4.350e-11 Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 1
Query: 337 YRVLKVAESSSSPQDPIA-RTVWARMRVPAFVSPVSRGFGLVW-----SGLGGDSNG--DVGFVVRVPRCVASGKRTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPELLLAG 735
+++ +V E P A R VW ++ P + RG L L NG +V F+V +P C +P+ V+Q+GHGLFGDR+E L ++ A R W+LV+ DW G K DL+ + +S PE L++
Sbjct: 498 WKITQVNEEKCIPGSETAGRIVWVSLKAPCYAEECRRGSVLHRVHTQDHSLNATMNGFINVPFIVFIP-CSIIQDPSPSFVMQYGHGLFGDRTEALYHYVTIPANRHRWILVSQDWYGFGKFDLLQIVHDALSHPEALISS 637
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A849Z7E1_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A849Z7E1_9DELT) HSP 1 Score: 71.6 bits (174), Expect = 1.320e-10 Identity = 56/127 (44.09%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 352 VAESSSSPQDPIARTVWARMRVPAFVSPVSRGFGLVWSGLGGDSNG--DVGFVVRVPRCV---ASGKRTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRP 717
V P IAR + M VP +V G LV G GG S+G +V F V +P V A G P R+LQFGHG FG R E D F +LA+ +V+VAADW GMSK D TV LV P
Sbjct: 281 VVSEDIDPGPHIARRIHMTMTVPLYVDSDKPGAALV--GPGGVSSGTAEVPFTVWIPPSVEDRAPGS-PPARLLQFGHGFFGTREECND-FPAQLADEEGFVIVAADWWGMSKPDQDTVLAKLVGDP 403
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A448YXP0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXP0_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 3.090e-9 Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 529 SGKRTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPELLLAGVPEDLMQ 756
SGK+ +++FGHGLFG+R E+ DGFL + ++ + DWRGMS++DL V R LV P+L A V ++L+Q
Sbjct: 141 SGKKLRA-IVEFGHGLFGNREEMKDGFLRRMGNNNGYITMGMDWRGMSRVDLPIVIRTLVGNPDLFQA-VRDNLIQ 214
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: B7FPF3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPF3_PHATC) HSP 1 Score: 67.4 bits (163), Expect = 3.820e-9 Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 1
Query: 385 IARTVWARMRVPAFVSPVS---RGFGL----VWSGLGGDSNGDVGFVVRVPRCVAS----GKRTPT--RVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPELLLAGVPEDLMQ 756
+ART+ A + VP ++S RG L + SG+ + FVV +P + S G T V++FGHG+F R+E + FL ++A +++ A DWRGMS DL T+A+ L+S PEL + ++L+Q
Sbjct: 465 LARTIHAELDVPWYLSTYGSGQRGAVLDPHAILSGIPVVTR-PTKFVVHIPCSIRSAILFGNETSNIRAVMEFGHGIFYSRAEAANDFLQQMAHENRYIITAMDWRGMSAFDLFTMAKTLLSTPELF-QSIRDNLIQ 599
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A7Z9G885_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Z9G885_9DELT) HSP 1 Score: 61.2 bits (147), Expect = 4.150e-7 Identity = 43/137 (31.39%), Postives = 67/137 (48.91%), Query Frame = 1
Query: 346 LKVAESSSSPQDPIARTVWARMRVPAFVSPVSRGFGLVWSGLGGDSNG--------DVGFVVRVPRCVASGK-RTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPELLL 729
+++ E + + I R + M+VP F+ G W + D +G V F + VP+ + SG+ P R++QFGHG FG RSE+ F+ + A + V++A +W GM D VA L PE L+
Sbjct: 277 VEITEVLNDVDESIGRKIVGTMQVPLFLDKEEAG---AW--VNRDESGAVVQNGMATVPFTIIVPKSLLSGEIAAPGRLVQFGHGFFGKRSEIEGDFVRKFANQIGAVVMAVEWWGMDNTDRGLVAEALYHHPETLM 408
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A661PE26_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661PE26_9DELT) HSP 1 Score: 59.7 bits (143), Expect = 1.360e-6 Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 373 PQDPIARTVWARMRVPAFVSPVSRGFGLVWSGLGGD--SNG--DVGFVVRVPRCVAS--GKRTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLV 708
P++ R + A + P F+S G ++ GG NG +V F V +P +A+ P R++QFGHG FG R EV +G + +LA+ +V+VAADW GM+ D I + L+
Sbjct: 284 PEEHTHRRIEATVTAPLFLSDTDLG-AMLHRDDGGQVSQNGTVEVPFTVLIPESIAALPPDGPPARLMQFGHGFFGGRDEV-NGIIDQLADERGFVVVAADWWGMTHEDSIAITDDLM 399
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Match: A0A3M1CUN2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1CUN2_9DELT) HSP 1 Score: 58.5 bits (140), Expect = 3.280e-6 Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 1
Query: 493 VGFVVRVPRCVASGKRTPTRVLQFGHGLFGDRSEVLDGFLGELAERGAWVLVAADWRGMSKIDLITVARGLVSRPELLLAGVPEDLMQ 756
V F++RVP V +G R P +LQFGHGL G+R+E L LA V+ A DW GM + D + ++ P A VPE L Q
Sbjct: 326 VPFLLRVPCSVLTGDR-PAPLLQFGHGLLGNRTEAYSSSLARLASDNGLVIGAVDWTGMKEDDRKAITLMIIEDPGKF-AMVPEGLAQ 411 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88377.16363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88377.16363.1 >prot_H-elongata_contig88377.16363.1 ID=prot_H-elongata_contig88377.16363.1|Name=mRNA_H-elongata_contig88377.16363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp LAGAGLGDVQLAWDFVTASEEAQLGALRAMRDVTMVWLDEMLSRAGAGGNback to top mRNA from alignment at H-elongata_contig88377:1483..2610+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88377.16363.1 ID=mRNA_H-elongata_contig88377.16363.1|Name=mRNA_H-elongata_contig88377.16363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1128bp|location=Sequence derived from alignment at H-elongata_contig88377:1483..2610+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88377:1483..2610+ >mRNA_H-elongata_contig88377.16363.1 ID=mRNA_H-elongata_contig88377.16363.1|Name=mRNA_H-elongata_contig88377.16363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig88377:1483..2610+ (Himanthalia elongata Himel1 dioecious)back to top |