mRNA_H-elongata_contig88370.16362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88370.16362.1
Unique NamemRNA_H-elongata_contig88370.16362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88370.16362.1 vs. uniprot
Match: A0A6H5KU46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU46_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.030e-16
Identity = 120/293 (40.96%), Postives = 152/293 (51.88%), Query Frame = 1 
Query:    1 QVPLPPGVLPPXXXXXXXXXXXXXXXXXXXXXXXXXREETAITETAHRLLPLTSLPERQRIAQDLVATHTTA---VPMSPELIPAATPAGPLLFM---PWSAST------DDDPGWLSGPGAIM-PVAVRLHHSVGLSSRMPLAQQPRASQTSVSPASPISSPLLVPSVEDLLMGE--EEEEQARQSLP----EPEGVN---DALEESQTRDPFEGVQL-WLEGARGGDNSVAGC--------------FPAATETPSTVE--RGLL--SNDVELLGDWAGDLMWSPLRTSSV 756
            +VPLPPGV+P XXXXXXXXXXXXXXXXXXXXXXXX     +     H +LP  SLPERQR+A+DLVA+   +   VP SPEL P ATPAGPLLF+   P S S+      +DDP WL   G I+ P A  +                + +Q  ++ A+         S+  LL+G+  EEEE+A  +LP    E  G     D   + Q RDPF GV++ WLE                          FP  +   +T+E  R +   +   ELLGD    LMW+PLRT SV
Sbjct:  331 KVPLPPGVVPXXXXXXXXXXXXXXXXXXXXXXXXXAPAAASEVTGPHGILPRLSLPERQRVAEDLVASPAPSHVLVPESPELAPTATPAGPLLFIAPPPASPSSNSPSSLEDDPEWLPHSGVIVSPAAAFVQQHQERXXXXXXXWXNQQNQLYLAGAAT--------SLTGLLLGDNQEEEEEAELALPVRRHESGGGEIDLDLSADCQDRDPFAGVEITWLENGXXXXXXXXXXXXXXXXXXXXAPTVFPLVSRDGTTMEQHRSVFPSAQSTELLGDADDALMWNPLRTPSV 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88370.16362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KU46_9PHAE6.030e-1640.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88370contigH-elongata_contig88370:1417..2172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931285.1697881-CDS-H-elongata_contig88370:1416..21721622931285.1697881-CDS-H-elongata_contig88370:1416..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88370 1417..2172 -
1691679773.3762722-CDS-H-elongata_contig88370:1416..21721691679773.3762722-CDS-H-elongata_contig88370:1416..2172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88370 1417..2172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88370.16362.1prot_H-elongata_contig88370.16362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88370 1417..2172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88370.16362.1

>prot_H-elongata_contig88370.16362.1 ID=prot_H-elongata_contig88370.16362.1|Name=mRNA_H-elongata_contig88370.16362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
QVPLPPGVLPPKRKKGAAAARTAADAAAAAVAAASNREETAITETAHRLL
PLTSLPERQRIAQDLVATHTTAVPMSPELIPAATPAGPLLFMPWSASTDD
DPGWLSGPGAIMPVAVRLHHSVGLSSRMPLAQQPRASQTSVSPASPISSP
LLVPSVEDLLMGEEEEEQARQSLPEPEGVNDALEESQTRDPFEGVQLWLE
GARGGDNSVAGCFPAATETPSTVERGLLSNDVELLGDWAGDLMWSPLRTS
SV
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mRNA from alignment at H-elongata_contig88370:1417..2172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88370.16362.1 ID=mRNA_H-elongata_contig88370.16362.1|Name=mRNA_H-elongata_contig88370.16362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=756bp|location=Sequence derived from alignment at H-elongata_contig88370:1417..2172- (Himanthalia elongata Himel1 dioecious)
CAGGTCCCGTTACCCCCAGGTGTATTGCCACCTAAGCGCAAGAAAGGGGC
GGCAGCAGCTAGAACCGCAGCAGACGCGGCGGCTGCAGCGGTAGCTGCAG
CTTCAAACCGAGAGGAAACTGCGATAACTGAGACTGCTCATCGCCTTCTG
CCCTTGACCAGCCTGCCGGAACGTCAACGCATCGCGCAAGACCTGGTCGC
GACACACACCACGGCAGTTCCGATGTCGCCGGAACTCATCCCCGCGGCGA
CTCCCGCCGGTCCCCTCCTCTTTATGCCCTGGAGTGCTTCGACGGACGAT
GATCCCGGCTGGCTGTCGGGGCCCGGGGCAATAATGCCGGTCGCCGTACG
ACTCCATCATTCCGTCGGCCTGTCGTCGCGGATGCCTCTCGCGCAACAGC
CTCGCGCGTCCCAAACATCCGTCAGTCCTGCCTCCCCGATTTCATCACCA
CTCCTGGTACCGTCTGTCGAGGACCTTCTCATGGGCGAAGAGGAAGAGGA
GCAGGCGCGGCAAAGCCTACCGGAGCCGGAGGGCGTGAACGATGCCTTAG
AGGAAAGCCAGACCAGGGACCCATTTGAGGGCGTGCAGCTGTGGCTTGAG
GGTGCCAGAGGCGGAGACAATAGTGTAGCCGGGTGCTTTCCGGCGGCGAC
AGAGACTCCCAGCACGGTGGAGCGCGGACTGTTGAGCAACGACGTGGAGT
TGCTCGGCGACTGGGCGGGGGACCTAATGTGGAGCCCTCTGCGGACGTCG
TCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig88370:1417..2172-

>mRNA_H-elongata_contig88370.16362.1 ID=mRNA_H-elongata_contig88370.16362.1|Name=mRNA_H-elongata_contig88370.16362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig88370:1417..2172- (Himanthalia elongata Himel1 dioecious)
CAGGTCCCGTTACCCCCAGGTGTATTGCCACCTAAGCGCAAGAAAGGGGC
GGCAGCAGCTAGAACCGCAGCAGACGCGGCGGCTGCAGCGGTAGCTGCAG
CTTCAAACCGAGAGGAAACTGCGATAACTGAGACTGCTCATCGCCTTCTG
CCCTTGACCAGCCTGCCGGAACGTCAACGCATCGCGCAAGACCTGGTCGC
GACACACACCACGGCAGTTCCGATGTCGCCGGAACTCATCCCCGCGGCGA
CTCCCGCCGGTCCCCTCCTCTTTATGCCCTGGAGTGCTTCGACGGACGAT
GATCCCGGCTGGCTGTCGGGGCCCGGGGCAATAATGCCGGTCGCCGTACG
ACTCCATCATTCCGTCGGCCTGTCGTCGCGGATGCCTCTCGCGCAACAGC
CTCGCGCGTCCCAAACATCCGTCAGTCCTGCCTCCCCGATTTCATCACCA
CTCCTGGTACCGTCTGTCGAGGACCTTCTCATGGGCGAAGAGGAAGAGGA
GCAGGCGCGGCAAAGCCTACCGGAGCCGGAGGGCGTGAACGATGCCTTAG
AGGAAAGCCAGACCAGGGACCCATTTGAGGGCGTGCAGCTGTGGCTTGAG
GGTGCCAGAGGCGGAGACAATAGTGTAGCCGGGTGCTTTCCGGCGGCGAC
AGAGACTCCCAGCACGGTGGAGCGCGGACTGTTGAGCAACGACGTGGAGT
TGCTCGGCGACTGGGCGGGGGACCTAATGTGGAGCCCTCTGCGGACGTCG
TCGGTGCAGGTCCCGTTACCCCCAGGTGTATTGCCACCTAAGCGCAAGAA
AGGGGCGGCAGCAGCTAGAACCGCAGCAGACGCGGCGGCTGCAGCGGTAG
CTGCAGCTTCAAACCGAGAGGAAACTGCGATAACTGAGACTGCTCATCGC
CTTCTGCCCTTGACCAGCCTGCCGGAACGTCAACGCATCGCGCAAGACCT
GGTCGCGACACACACCACGGCAGTTCCGATGTCGCCGGAACTCATCCCCG
CGGCGACTCCCGCCGGTCCCCTCCTCTTTATGCCCTGGAGTGCTTCGACG
GACGATGATCCCGGCTGGCTGTCGGGGCCCGGGGCAATAATGCCGGTCGC
CGTACGACTCCATCATTCCGTCGGCCTGTCGTCGCGGATGCCTCTCGCGC
AACAGCCTCGCGCGTCCCAAACATCCGTCAGTCCTGCCTCCCCGATTTCA
TCACCACTCCTGGTACCGTCTGTCGAGGACCTTCTCATGGGCGAAGAGGA
AGAGGAGCAGGCGCGGCAAAGCCTACCGGAGCCGGAGGGCGTGAACGATG
CCTTAGAGGAAAGCCAGACCAGGGACCCATTTGAGGGCGTGCAGCTGTGG
CTTGAGGGTGCCAGAGGCGGAGACAATAGTGTAGCCGGGTGCTTTCCGGC
GGCGACAGAGACTCCCAGCACGGTGGAGCGCGGACTGTTGAGCAACGACG
TGGAGTTGCTCGGCGACTGGGCGGGGGACCTAATGTGGAGCCCTCTGCGG
ACGTCGTCGGTG
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