mRNA_H-elongata_contig88333.16361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88333.16361.1
Unique NamemRNA_H-elongata_contig88333.16361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 241 bits (615), Expect = 3.120e-70
Identity = 157/464 (33.84%), Postives = 235/464 (50.65%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRD--SRKQVGLLKKAMYGLVHAGL-----LCAMKRDEEQA------------------------VRDLCSC-----------------FRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKT-SILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGE-VGGARSYQY--YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPPIDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRDAMEGG 1236
            AI  E+      G W++ E+P G  V+G+  VFK K D  G I KYK  LVAQGF Q+ G+ Y ++ +P    +SIR++ ++ A   WE  Q+DV  AYL  D+EEEI+++ P  +      ++V  L K +YGL  AG      LCA   D   A                        V DL                    F + DLGE  + LG  I RDR   T+   Q  YI T+  RF +    S+  ++    +L+   SP T    ++MR I YRE +G+LM AA  TRPD+S+A   L++F  NPG  HW AA++ ++YL  T +  +TYGG+   G   +    +G+  D RRS+SG   ++ GGA+SW S+ + + A +S+++EYVA+     E+ +       +  P D    ++ DN+ AI +AK+     R +H+ I+ H +RD +E G
Sbjct:   48 AIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGDNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERG 510          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 243 bits (619), Expect = 4.760e-70
Identity = 148/465 (31.83%), Postives = 236/465 (50.75%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAG------------------------------------LLCAMKRDEEQAV----------RDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKT-SILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSYQY--YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPP--IDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRDAMEGG 1236
            AI +EM      G + +VE PK   ++G++ VF+ K + + +IE YK  LVAQGF QV GI + E+ +P    ASI ++ ++ A   WE  Q+DV  AYL  D+EEEIY++ P    +  K+  V  LK+ +YGL  +G                                    LL A+  D+              R++ + F++ DLGE  + LG  + RDR+  TL   QH YI  +  RF +    S+   +  G  LS    P T    E+M+ IPYRE++G+LM AA  TRPDI++A   L++F  NPG  HW AA++  +YL  T +  +T+G    G   +    +G+  + R S+SG   ++ G A+SW ++ + V A +S+++EY+A+     E  +L  +   +  P  +   +++H DN+  I +AK+     R +H+ I+ H +   +E G
Sbjct:  130 AIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDGVEGFSDADWGSA-EHRHSISGYVFLLDGSAVSWSAKKQNVVALSSTEAEYIAITHATKEALWLHSLLADVLHPDILRYPVRLHSDNKSVIALAKDDAYHARTKHIDIRFHFIHKTVENG 593          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 250 bits (639), Expect = 9.900e-70
Identity = 153/465 (32.90%), Postives = 239/465 (51.40%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAG------------------------------------LLCAMKRDEEQAV----------RDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKT-SILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSYQY--YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPP--IDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRDAMEGG 1236
            AIA+EM      G + +VE PK   ++G++ VF+ K + +G+IE YK  LVAQGF QV GI + E+ +P    ASIR++ ++ A   WE  Q+DV  AYL  D+EEEIY+  P    +  K+  V  LK+ +YGL  +G                                    LL A+  D+              R++ + F + DLGE  + LG  + RDR+  TL   Q  YI  +  RF +    S+   +  G  LS    P T    E+M+ IPYRE +G+LM AA  TRPDI++A   L++F  NPG  HW AA++  +YL  T +  +T+G    G   +    +G+  + R S+SG   ++ GGA+SW ++ + V A +S+++EY+A+     E  +L  +   +  P  +   +++H DN+ AI +AK+     R +H+ I+ H +R+ +E G
Sbjct:  940 AIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGETTDGVEGFSDADWGSA-EHRHSISGYVFLLDGGAVSWSAKKQNVVALSSTEAEYIAITHATKEALWLRSLLADVLHPDILRYPVRLHSDNKSAIALAKDDAYHARTKHIDIRFHFIRETVENG 1403          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 234 bits (597), Expect = 5.130e-68
Identity = 152/457 (33.26%), Postives = 231/457 (50.55%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGLVHAG-----------------------------------LLCAMKRDE----------EQAVRDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKT-SILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSYQY----YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPPIDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRD 1221
            A+  E D  +  G W  V+R     V+ T+ VF +K ++ G I ++K  LVA GF Q+ G+ + E+ +   +  SIR+  S+  A G+   QLDVD A+L AD++E++YIE PE  +    +V  L KA+YGL  AG                                    +C    D           ++  + + + FRIK+LG   + LG  I  DR    L  +Q  Y++T+ ERF       +         LSK+D P+ D    EM + PYR ++G L   A  TRPDI+FA   L++F +NPG  HW AA + L+YL  T D GI+YGG+        +    +GT  D RRSVSG  +M++GG I + ++ +   A +SS++EY+AL+    E+ ++  +   +   I   I++ EDN+GAI +A N     R +H+ I+HH VRD
Sbjct:   12 AVKAEFDAHSRNGTWTKVKRQTWMKVIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRD 468          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 244 bits (622), Expect = 1.910e-67
Identity = 158/463 (34.13%), Postives = 233/463 (50.32%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKG--IHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQ--VGLLKKAMYGLVHAG------LLCAM----------------KRDEEQAVR----------------------DLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSILP-SVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSYQY--YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPP--IDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRDAME 1230
            AI  E D      V+ +VE P    ++G+++VF+ K D +G +  +K  LVAQGF QV G   H +E+ +P     SIR + S+ A   WE RQ+DV  AYL   +EE +Y+ LP  +    +   V  LKK +YGL  AG      L  AM                KR+ E A+                       D+   F + DLG+  + LG  + RDR   T+   Q  YI T+  RF + + + L   +  G  L    SP T    E+MR +PYRE VG+LM AA  TRPDI+FA   L++F  NPG  HW A ++ L+YL  + +L + YG    G R Y    +G+  + R S+SG    + GGAISW S+ + V A +S+++EY+AL     E  +L +V   +  P      +++H DN  AI +AK+     R +H+ I+ H +R+A++
Sbjct: 1046 AIDAEYDNLRRHDVFDLVEPPPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKREGESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYGTNNEGLRGYSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTEAEYIALTHATKEAIWLRYVLSDILHPELATFPVRLHSDNRSAIALAKDNAFHSRTKHIDIRFHFIREAVD 1508          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 243 bits (621), Expect = 2.170e-67
Identity = 153/462 (33.12%), Postives = 240/462 (51.95%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELP--EAYRDSRKQVGLLKKAMYGLVHAG-----LLCAM-----------------KRDEEQAVR-----DLC------------------SCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVT--KTSILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSY-QYYGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPPIDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRDAMEGG 1236
            AI  E+D     G W++V RP    V+ ++ V + K +  G+I+KYK  LVA+GF QV G+ Y ++ +P    +SIR++ +I A  GW A   D + AYL + ++E++Y+E P   A+ D +  V  L+KA+YGL   G      LCA                  K + E  +      D C                  + ++I DLG  S+ LG  I+ D   GTL   QH YI+ +  RF  T  K   +P +   + LSK+  P++ A+V  MR++PYRE +GALM AA  TRPDI+FA   LA+F  NPG  HW A ++  +YL  T  L + YGG+      Y    G   + RR+++G   +V GGA+SW S+ +++   ++++SEYVA      E  +L  +   +  P+  A  ++ DN+ AI + K+     R +H+ +++H +R  ++ G
Sbjct:  816 AIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKHEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMP-MDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQQRELEGYVNADGATQEHRRAITGYVFLVDGGAVSWASKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFGPLSNATMLYSDNQAAIALTKDGSYHARTKHIDVRYHFIRYYIDAG 1276          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 243 bits (621), Expect = 2.310e-67
Identity = 151/458 (32.97%), Postives = 241/458 (52.62%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRDSRKQVGLLKKAMYGL----------VHA---------------------------------GLLCAMKRDEE--QAVRDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGV--TKTSILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSYQY----YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPPIDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRD 1221
            A+  E+      G W +V R  G   +G R VF +K ++ G++ +YK  LVA+GF+Q  G+ + E+ SP     SIR+V S++ A  +   QLD D A+L +D++E++++E+P    ++   +  L KA+YGL          +HA                                  ++ A K ++E  +    L S F++K+LGE  + LG  I  DR   TLM  Q +YI  +  RF     K  + P  +G K L+K  SP T+A+ E+MR  PYR ++G L+   T TRPD+++   QL++F +NPG  HW+AA + L+YL  T + GI Y G  G      Y    +G+  D RRSVSG  +MV G  + + S+ ++  A +S+++EY+AL+    E+ +   + K +      A ++ EDN+GAI +A N   + R +HV I+HH +R+
Sbjct:  855 AMNSELKAHADNGSWTLVRRTSGARPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFMEVPYGILNAEHMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFHSCGADQCVYVKGTKDNYVYVCLYVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMK-LTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNGNNGKVAMEAYTDADWGSNLDDRRSVSGIMIMVGGAPVIFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRTMLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKHVDIRHHFIRE 1311          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 241 bits (616), Expect = 1.170e-66
Identity = 158/470 (33.62%), Postives = 243/470 (51.70%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELP--EAYRDSRKQVGLLKKAMYGLVHAG------------------------------------LLCAMKRDE------EQAV----RDLCSCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSILPS-VAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSYQY--YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNE---LRFL------PHVKKFMTPPIDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRDAME 1230
            AI +EM        + +VE P+   V+G++ VF+ K + +GKIE YK  LVAQGF Q+ GI + ++ +P    ASIR++ ++ A   W+  Q+DV  AYL AD+EEEI+++ P  +A R     V LL+ A+YGL  +G                                    L+ A+  D+        AV     ++   F + DLGE  + LG  + RDR   TL   Q  YI  +  RF +     L + +  G  LS    P T  + E+MR +PYRE +G+LM AA  TRPDI+FA   L++F  NPG  HW AA++ L+YL  T +  +TYG    G   +    +G+  + R S+ G   ++ GGA+SW ++ + V A +S+++EY+AL     E   +R+L      P V KF       A+++H DN  AI +AK+     R +H+ I++H +R+A++
Sbjct:  978 AIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKSTREKWLTYGLTRNGVEGFSDADWGSS-EHRHSICGYVFLIDGGAVSWSAKKQPVVALSSTEAEYIALTHAAKEAIWVRYLLADILDPDVSKF-------ALRLHTDNRSAIALAKDNAYHARTKHIDIRYHFIREAVD 1439          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 239 bits (611), Expect = 5.440e-66
Identity = 152/464 (32.76%), Postives = 232/464 (50.00%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPE--AYRDSRKQVGLLKKAMYGLVHAG-----------LLCAMKRDEEQ-------------------------AVRDLCSCFR--------IKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGV--TKTSILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGGARSYQY--YGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPPIDV--AIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRDAMEGG 1236
            AI  EMD       + +V RP G  V+G+R+VF RK D DG I++ K  +VAQGF Q+ G+ Y E+ +P    +S+R++ ++ A   W   QLDV  AYL  D++EEIY+  P   A +     V  L+K++YGL  AG               M R E                              DL   FR        + D G+ ++ LG  + RD + GT+   Q   I T+     +   K +  P   GG  L K+  P T + + EM  IPYRE VG  M  A  TRPDI++A H+LA++  NPG  HW A ++ ++YL  T +L +TYGG+  G   Y    +G+  D R SV G      GGA+SW ++ + V A +S+++EY+ +     E  +L  +   +  P     A++++ DN+ A+ +A+N     R +H+ I++H +R+A+E G
Sbjct: 1006 AITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAGRAWYKKYRDAMTTLGMTRSEADHACFWQHGGDSLAMVGTIVDDMLVTGTPDLVEKFRAGIKAEFTVTDAGDVAWLLGIEVVRDLDAGTVRLAQRSAIDTLMRAMHLEGAKPASTPIAVGG-VLDKTQCPTTASAIAEMSGIPYREGVGMCMYIAVTTRPDIAYAVHRLAQYMSNPGRPHWEALKRLVRYLIGTRELWLTYGGDASGLAGYTDADWGSSDDTRHSVCGYVYTFDGGAVSWSAKKQNVVALSSTEAEYIGITHATKEAIWLRALLGDLIDPSFATHAVRLYSDNKSAMDLARNNAFHSRTKHIAIRYHFIREAVERG 1468          
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.450e-66
Identity = 155/465 (33.33%), Postives = 235/465 (50.54%), Query Frame = 1
Query:    1 AIAREMDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGFRQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVEEEIYIELPEAYRD---------SRKQVGLLKKAMYGLVHAGLL---------------------CAMKRDEEQAVRDLC------------------------SCFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTS-ILPSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*AATMTRPDISFAAHQLAKFNDNPGATHWRAAQKALQYLWRTPDLGITYGGEVGG---ARSYQYYGTCPDMRRSVSGGAVMVSGGAISWFSRVKKVTAAASSKSEYVALAEMVNELRFLPHVKKFMTPPIDVAIKMHEDNEGAIKMAKNCFSSRRMRHVYIKHHIVRD 1221
            AIA E+        W++V +P  +  +G R VF  K ++ G++ +YK  LVA+G+ Q  GI YEE+ SP     S+R + +   A G E  Q DVD A+L  ++EEEIY+ELPE  R+             V +L +++YGL  A  +                     C   R E +    +C                          FRIKDLG A + +G  I  D    TL   Q  Y +++ ++FG       L  +  G  L+K+D PQT+ D  +M+  PYR +VG+LM  A  TRPDIS A  +L++F +NPG  HW A  K ++YL +T D+GI Y G +G    A S   +    D RRSVSG  +M+ G  + W S  +K  A +S+++EY+AL++ V E  ++  + K +      A  ++EDN+GA+ +AKN     R +H+ I++H +R+
Sbjct:   84 AIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRGEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRE 548          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88333.16361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZVS1_9AGAM3.120e-7033.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GP19_9APHY4.760e-7031.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GN13_9APHY9.900e-7032.90Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A8K1CTN1_PYTOL5.130e-6833.26Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A2G8RWY5_9APHY1.910e-6734.13Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A060SPD4_PYCCI2.170e-6733.12Integrase catalytic domain-containing protein n=1 ... [more]
H3H572_PHYRM2.310e-6732.97Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A401GQU1_9APHY1.170e-6633.62Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A1M2V8C6_TRAPU5.440e-6632.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q908_9STRA5.450e-6633.33Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88333contigH-elongata_contig88333:675..2168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue6.2e-30
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1342
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88333.16361.1prot_H-elongata_contig88333.16361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88333 690..1541 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931285.048966-UTR-H-elongata_contig88333:674..6891622931285.048966-UTR-H-elongata_contig88333:674..689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88333 675..689 +
1691679773.3233514-UTR-H-elongata_contig88333:674..6891691679773.3233514-UTR-H-elongata_contig88333:674..689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88333 675..689 +
1622931285.09958-UTR-H-elongata_contig88333:1541..17191622931285.09958-UTR-H-elongata_contig88333:1541..1719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88333 1542..1719 +
1691679773.3561149-UTR-H-elongata_contig88333:1541..17191691679773.3561149-UTR-H-elongata_contig88333:1541..1719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88333 1542..1719 +
1622931285.122448-UTR-H-elongata_contig88333:1733..21681622931285.122448-UTR-H-elongata_contig88333:1733..2168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88333 1734..2168 +
1691679773.3670464-UTR-H-elongata_contig88333:1733..21681691679773.3670464-UTR-H-elongata_contig88333:1733..2168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88333 1734..2168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931285.0672278-CDS-H-elongata_contig88333:689..10931622931285.0672278-CDS-H-elongata_contig88333:689..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88333 690..1093 +
1691679773.3373036-CDS-H-elongata_contig88333:689..10931691679773.3373036-CDS-H-elongata_contig88333:689..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88333 690..1093 +
1622931285.0828362-CDS-H-elongata_contig88333:1231..15411622931285.0828362-CDS-H-elongata_contig88333:1231..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88333 1232..1541 +
1691679773.3472626-CDS-H-elongata_contig88333:1231..15411691679773.3472626-CDS-H-elongata_contig88333:1231..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88333 1232..1541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88333.16361.1

>prot_H-elongata_contig88333.16361.1 ID=prot_H-elongata_contig88333.16361.1|Name=mRNA_H-elongata_contig88333.16361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
MDGQTGRGVWQVVERPKGKTVLGTRVVFKRKIDKDGKIEKYKCPLVAQGF
RQVKGIHYEESSSPTPAQASIRMVFSIIAALGWEARQLDVDMAYLEADVE
EEIYIELPEAYRDSRKQVGLLKKAMYGLVHAGLLCAMKRDEEQAVRDLCS
CFRIKDLGEASYYLGCHITRDRNTGTLMFDQHQYIQTMAERFGVTKTSIL
PSVAGGKALSKSDSPQTDADVEEMRQIPYREIVGALM*
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mRNA from alignment at H-elongata_contig88333:675..2168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88333.16361.1 ID=mRNA_H-elongata_contig88333.16361.1|Name=mRNA_H-elongata_contig88333.16361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1494bp|location=Sequence derived from alignment at H-elongata_contig88333:675..2168+ (Himanthalia elongata Himel1 dioecious)
GCGATCGCGCGCGAGATGGATGGGCAAACTGGTCGAGGCGTATGGCAGGT GGTGGAGCGCCCAAAAGGTAAGACGGTGTTGGGCACGAGAGTAGTTTTCA AGCGAAAAATCGACAAGGATGGAAAGATCGAGAAGTATAAATGTCCTCTC GTGGCGCAGGGTTTTAGGCAGGTCAAAGGCATACACTACGAGGAATCCTC CTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTATTCAGCATAATCG CGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTG GAGGCCGATGTGGAGGAGGAGATCTACATTGAGCTCCCGGAGGCATACCG TGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAAGCAATGTACGGACTCG TCCACGCCGGGCTGCTGTGGTAAAAAAAGTTCGGGATCGAGTTCGAGGCG AAGGGTTTCCAGAGATCTCAAGCCGGCCCATGCGTGTTCCAGCAGATTCT CCACGGGGTAGTGGTAGTAGTCATTGTGGTCTACGTCGACGACCTGCTGG TTGCTAGTGCGATGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGC TCCTGTTTCCGCATCAAGGATCTGGGGGAGGCTTCGTATTACCTGGGATG CCACATCACGCGGGACCGGAACACCGGGACACTGATGTTCGACCAGCATC AGTACATACAGACTATGGCGGAACGTTTTGGCGTGACGAAGACCAGCATA CTCCCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCA AACGGACGCAGATGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCG TTGGGGCCCTAATGTGAGCAGCGACGATGACCAGGCCCGACATTTCATTC GCTGCGCACCAACTGGCGAAATTCAACGACAACCCGGGAGCGACACACTG GAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCCGGACCTCG GGATCACCTACGGAGGGGAAGTGGGGGGGGCACGAAGTTATCAGTGTGGA TCGACGCAGACTACGGCACCTGCCCGGACATGCGTCGTTCAGTGTCGGGA GGGGCGGTGATGGTGTCTGGCGGGGCCATTAGTTGGTTCTCGCGAGTGAA AAAGGTAACGGCGGCGGCGTCATCCAAATCGGAATACGTCGCGCTGGCTG AGATGGTAAACGAGTTGCGTTTCCTACCACATGTCAAGAAGTTCATGACC CCCCCAATCGACGTCGCCATCAAGATGCACGAGGACAACGAAGGCGCAAT CAAGATGGCGAAAAACTGCTTTAGCAGTCGACGAATGAGACACGTGTACA TCAAGCATCACATTGTCCGCGACGCGATGGAGGGGGGGGGTGGTTCACGT AAAATACGTTCGGTCCGGGAAACAGCACGCCGACATCTTCACGAAGTCCG TAGACGTCAAGACATTTGAGAAGCACGCGAGATTCCTTCTGAAT
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Coding sequence (CDS) from alignment at H-elongata_contig88333:675..2168+

>mRNA_H-elongata_contig88333.16361.1 ID=mRNA_H-elongata_contig88333.16361.1|Name=mRNA_H-elongata_contig88333.16361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig88333:675..2168+ (Himanthalia elongata Himel1 dioecious)
ATGGATGGGCAAACTGGTCGAGGCGTATGGCAGGTGGTGGAGCGCCCAAA
AGGTAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGAAAAATCGACA
AGGATGGAAAGATCGAGAAGTATAAATGTCCTCTCGTGGCGCAGGGTTTT
AGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACTCCTGC
GCAGGCCAGCATTAGGATGGTATTCAGCATAATCGCGGCTCTCGGCTGGG
AGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGATGTGGAG
GAGGAGATCTACATTGAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCA
AGTCGGCCTACTAAAGAAAGCAATGTACGGACTCGTCCACGCCGGGCTGC
TGTGATGGATGGGCAAACTGGTCGAGGCGTATGGCAGGTGGTGGAGCGCC
CAAAAGGTAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGAAAAATC
GACAAGGATGGAAAGATCGAGAAGTATAAATGTCCTCTCGTGGCGCAGGG
TTTTAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACTC
CTGCGCAGGCCAGCATTAGGATGGTATTCAGCATAATCGCGGCTCTCGGC
TGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGATGT
GGAGGAGGAGATCTACATTGAGCTCCCGGAGGCATACCGTGACTCCAGGA
AGCAAGTCGGCCTACTAAAGAAAGCAATGTACGGACTCGTCCACGCCGGG
CTGCTGTGTGCGATGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTG
CTCCTGTTTCCGCATCAAGGATCTGGGGGAGGCTTCGTATTACCTGGGAT
GCCACATCACGCGGGACCGGAACACCGGGACACTGATGTTCGACCAGCAT
CAGTACATACAGACTATGGCGGAACGTTTTGGCGTGACGAAGACCAGCAT
ACTCCCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGC
AAACGGACGCAGATGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAATC
GTTGGGGCCCTAATGTGATGCGATGAAACGTGACGAGGAGCAAGCGGTGA
GGGACCTGTGCTCCTGTTTCCGCATCAAGGATCTGGGGGAGGCTTCGTAT
TACCTGGGATGCCACATCACGCGGGACCGGAACACCGGGACACTGATGTT
CGACCAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGTGACGA
AGACCAGCATACTCCCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAAATCA
GACAGCCCGCAAACGGACGCAGATGTTGAAGAAATGCGCCAGATTCCCTA
CCGAGAAATCGTTGGGGCCCTAATGTGA
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