mRNA_H-elongata_contig121326.1636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121326.1636.1
Unique NamemRNA_H-elongata_contig121326.1636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: D8LK78_ECTSI (Ubiquinol cytochrome c reductase subunit QCR7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK78_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 8.820e-27
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
            GLKFDDLMIEE+PDVAEA+RRLTP Q+LAR+RRQ RAFDISLKKTPLPDHIQAVQ P
Sbjct:   32 GLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDP 88          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S3LNZ1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LNZ1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.680e-9
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
            GL+++D++I ENPDV  A++ + P +  AR RR  RA D+S K   LP HIQA+Q P
Sbjct:   26 GLRYEDVIIYENPDVQRALKYIPPEEVEARNRRIRRALDLSFKHKELPKHIQAIQAP 82          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: M2XVT8_GALSU (Ubiquinol-cytochrome c reductase subunit 7 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVT8_GALSU)

HSP 1 Score: 55.5 bits (132), Expect = 2.120e-8
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHI 153
            GL++DDL+ E++PDV +AI  L   +K  R +R +RAFD+S+KKT LP+ I
Sbjct:   37 GLRYDDLLNEQDPDVKQAIEMLPEHEKQLRAKRFIRAFDLSMKKTQLPEEI 87          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S2TS46_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TS46_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 4.900e-8
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
            GL++DDL+IE +PDV  AI RL+P ++  R  R  RA D  +K + +P+H+Q  Q P
Sbjct:   46 GLRYDDLLIETDPDVITAISRLSPRERTLRTMRLKRALDCEIKHSYVPEHLQGKQGP 102          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A1X6NXZ7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXZ7_PORUM)

HSP 1 Score: 53.9 bits (128), Expect = 9.020e-8
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQ 165
            GL++DDL+ E +P+V + IR + P +   R +R  RA D+ LKKT LPD IQA Q
Sbjct:   41 GLRYDDLLNEYDPEVRKTIRTMPPEEAELRAKRLTRAIDVDLKKTQLPDPIQAKQ 95          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S2WSF4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WSF4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.300e-8
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
            GL+++D+++ ENPDV  A++ +   +++AR+RR  RA D++ K   LP  I+AVQ+P
Sbjct:   24 GLRYEDILMTENPDVKRALQYIPKEEQIARQRRIRRAIDLNFKHQYLPKEIEAVQEP 80          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: M1US14_CYAM1 (Cytochrome c reductase subunit 7(VI) n=2 Tax=cellular organisms TaxID=131567 RepID=M1US14_CYAM1)

HSP 1 Score: 49.7 bits (117), Expect = 3.880e-6
Identity = 23/51 (45.10%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHI 153
            GL++DDL++E +P+V+ A+ +L PA++  R +R  RA D+S+KKT L ++I
Sbjct:   37 GLRYDDLLLETDPEVSAALEQLPPAEQELRWKRIKRALDLSMKKTYLAENI 87          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A0C3CYF1_HEBCY (Cytochrome b-c1 complex subunit 7 n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C3CYF1_HEBCY)

HSP 1 Score: 49.3 bits (116), Expect = 6.460e-6
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLP 144
            G K+DDL++EENP V  A+ RLTPA+K  R  R  RA   S+   PLP
Sbjct:   40 GFKYDDLLVEENPQVQRALGRLTPAEKFDRAYRLKRASQQSVLHAPLP 87          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A7S0D5M2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D5M2_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 1.630e-5
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHI 153
            GL++DDL+IE +PDV  AI RL P ++  R+ R  RA D  LK + +P+ +
Sbjct:   43 GLRYDDLLIETDPDVMTAISRLPPRERALRQMRLKRALDCELKHSYVPEQL 93          
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Match: A0A5D6YYW9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YYW9_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.390e-5
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 GLKFDDLMIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP 171
            GLK+DD +++  P V EA+  +   +  AR RR  RA D S+K+T LP+ IQA+Q+P
Sbjct:   24 GLKYDDALVDI-PAVQEALHWVPKGEYTARTRRIARATDCSMKRTYLPEEIQAIQKP 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121326.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LK78_ECTSI8.820e-2787.72Ubiquinol cytochrome c reductase subunit QCR7 n=2 ... [more]
A0A7S3LNZ1_9STRA1.680e-949.12Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
M2XVT8_GALSU2.120e-850.98Ubiquinol-cytochrome c reductase subunit 7 n=1 Tax... [more]
A0A7S2TS46_9EUKA4.900e-845.61Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A1X6NXZ7_PORUM9.020e-849.09Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2WSF4_9STRA9.300e-842.11Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
M1US14_CYAM13.880e-645.10Cytochrome c reductase subunit 7(VI) n=2 Tax=cellu... [more]
A0A0C3CYF1_HEBCY6.460e-652.08Cytochrome b-c1 complex subunit 7 n=1 Tax=Hebeloma... [more]
A0A7S0D5M2_9EUKA1.630e-545.10Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A5D6YYW9_9STRA2.390e-545.61Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121326contigH-elongata_contig121326:1622..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionubiquinol cytochrome c reductase subunit QCR7
Ec32 orthologEc-08_003040.1
Exons1
Model size171
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.8961995-UTR-H-elongata_contig121326:1621..16421622929713.8961995-UTR-H-elongata_contig121326:1621..1642Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121326 1622..1642 +
1691679129.1430693-UTR-H-elongata_contig121326:1621..16421691679129.1430693-UTR-H-elongata_contig121326:1621..1642Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121326 1622..1642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.9076102-CDS-H-elongata_contig121326:1642..17921622929713.9076102-CDS-H-elongata_contig121326:1642..1792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121326 1643..1792 +
1691679129.1585152-CDS-H-elongata_contig121326:1642..17921691679129.1585152-CDS-H-elongata_contig121326:1642..1792Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121326 1643..1792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121326.1636.1prot_H-elongata_contig121326.1636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121326 1643..1792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121326.1636.1

>prot_H-elongata_contig121326.1636.1 ID=prot_H-elongata_contig121326.1636.1|Name=mRNA_H-elongata_contig121326.1636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MIEENPDVAEAIRRLTPAQKLARRRRQLRAFDISLKKTPLPDHIQAVQQP
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mRNA from alignment at H-elongata_contig121326:1622..1792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121326.1636.1 ID=mRNA_H-elongata_contig121326.1636.1|Name=mRNA_H-elongata_contig121326.1636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig121326:1622..1792+ (Himanthalia elongata Himel1 dioecious)
GGCCTCAAATTCGATGATCTAATGATAGAGGAGAACCCCGACGTCGCGGA GGCCATCAGGCGCTTAACGCCGGCACAGAAGCTCGCCCGCAGGCGCCGCC AGCTTCGGGCGTTCGATATCTCGCTCAAGAAGACACCGCTCCCGGACCAC ATCCAGGCTGTGCAGCAACCC
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Coding sequence (CDS) from alignment at H-elongata_contig121326:1622..1792+

>mRNA_H-elongata_contig121326.1636.1 ID=mRNA_H-elongata_contig121326.1636.1|Name=mRNA_H-elongata_contig121326.1636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig121326:1622..1792+ (Himanthalia elongata Himel1 dioecious)
ATGATAGAGGAGAACCCCGACGTCGCGGAGGCCATCAGGCGCTTAACGCC
GGCACAGAAGCTCGCCCGCAGGCGCCGCCAGCTTCGGGCGTTCGATATCT
CGCTCAAGAAGACACCGCTCCCGGACCACATCCAGGCTGTGCAGCAACCC
ATGATAGAGGAGAACCCCGACGTCGCGGAGGCCATCAGGCGCTTAACGCC
GGCACAGAAGCTCGCCCGCAGGCGCCGCCAGCTTCGGGCGTTCGATATCT
CGCTCAAGAAGACACCGCTCCCGGACCACATCCAGGCTGTGCAGCAACCC
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