mRNA_H-elongata_contig8833.16360.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8833.16360.1
Unique NamemRNA_H-elongata_contig8833.16360.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: D8LU48_ECTSI (Ubiquitin UbiA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU48_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.870e-36
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            QESTL ++L LRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK
Sbjct:   63 QESTLQVLLSLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
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BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: A0A8D0YMU0_PIG (Ubiquitin-60S ribosomal protein L40 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YMU0_PIG)

HSP 1 Score: 125 bits (315), Expect = 7.600e-36
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +EST+H++L L GGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK
Sbjct:   63 KESTVHVLLSLHGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 128
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BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: A0A7S3H022_9STRA (Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A7S3H022_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.840e-35
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +ESTLHLVLRLRGGV+DPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTNQLR KKKLK
Sbjct:   81 KESTLHLVLRLRGGVFDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNQLRIKKKLK 146
[Close]
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: W7TN89_9STRA (Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN89_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.660e-35
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +ESTLHLVLRLRGGVYDPSLAALAKTFN EKM+CRKCYARLPPRAKNCRKKKCGHTN LR KKKLK
Sbjct:   63 KESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
[Close]
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: A0A7S1VHH9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VHH9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.100e-34
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +ESTLHLVLRLRGGVYDP+LA LAK+FN EK +CRKCYARLPPRAKNCRKKKCGHT+QLRPKKKLK
Sbjct:   35 KESTLHLVLRLRGGVYDPTLALLAKSFNCEKAICRKCYARLPPRAKNCRKKKCGHTSQLRPKKKLK 100
[Close]
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: Q2H069_CHAGB (Ubiquitin n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2H069_CHAGB)

HSP 1 Score: 117 bits (294), Expect = 2.480e-33
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            QESTLHLVLRLRGG+ +PSL ALA  FN EKM+CRKCYARLPPRA NCRK+KCGHTNQLRPKKKLK
Sbjct:    9 QESTLHLVLRLRGGIIEPSLKALASKFNCEKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 74
[Close]
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: B7G5H7_PHATC (Ubiquitin extension protein 1/2 n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7G5H7_PHATC)

HSP 1 Score: 119 bits (297), Expect = 4.180e-33
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +ESTLHLVLRLRGGVYDPSLA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:   63 KESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
[Close]
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: A0A1Z5JFA3_FISSO (Large subunit ribosomal protein L40e n=4 Tax=Stramenopiles TaxID=33634 RepID=A0A1Z5JFA3_FISSO)

HSP 1 Score: 118 bits (295), Expect = 8.410e-33
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +ESTLHLVLRLRGGVYDP+LA LAK FN +K VCRKCYARLPPRA NCRKKKCGHT+QLRPKKKLK
Sbjct:   63 KESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
[Close]
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: W3XAR8_PESFW (Ubiquitin-60S ribosomal protein L40 n=5 Tax=leotiomyceta TaxID=716546 RepID=W3XAR8_PESFW)

HSP 1 Score: 117 bits (293), Expect = 1.800e-32
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +ESTLHLVLRLRGG+ +PSL ALA  FN EKM+CRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:   65 KESTLHLVLRLRGGIIEPSLKALASKFNCEKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 130
[Close]
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Match: A0A0L0HIA2_SPIPD (Ubiquitin-60S ribosomal protein L40 n=3 Tax=Spizellomycetales TaxID=34478 RepID=A0A0L0HIA2_SPIPD)

HSP 1 Score: 116 bits (291), Expect = 3.420e-32
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRKKKCGHTNQLRPKKKLK 198
            +ESTLHLVLRLRGG+ +PSL ALA  +N EKMVCRKCYARLPPRA NCRKKKCGHTNQLRPKKKLK
Sbjct:   63 KESTLHLVLRLRGGIIEPSLKALASKYNCEKMVCRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8833.16360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU48_ECTSI1.870e-3693.94Ubiquitin UbiA n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A8D0YMU0_PIG7.600e-3690.91Ubiquitin-60S ribosomal protein L40 n=1 Tax=Sus sc... [more]
A0A7S3H022_9STRA1.840e-3592.42Hypothetical protein n=5 Tax=Eukaryota TaxID=2759 ... [more]
W7TN89_9STRA9.660e-3592.42Ubiquitin n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A7S1VHH9_9STRA1.100e-3487.88Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
Q2H069_CHAGB2.480e-3384.85Ubiquitin n=1 Tax=Chaetomium globosum (strain ATCC... [more]
B7G5H7_PHATC4.180e-3387.88Ubiquitin extension protein 1/2 n=9 Tax=Bacillario... [more]
A0A1Z5JFA3_FISSO8.410e-3386.36Large subunit ribosomal protein L40e n=4 Tax=Stram... [more]
W3XAR8_PESFW1.800e-3284.85Ubiquitin-60S ribosomal protein L40 n=5 Tax=leotio... [more]
A0A0L0HIA2_SPIPD3.420e-3284.85Ubiquitin-60S ribosomal protein L40 n=3 Tax=Spizel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8833contigH-elongata_contig8833:8289..9209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D8LU48
KEGG koko:K02927,ko:K15219
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionubiquitin UbiA
Ec32 orthologEc-16_000210.1
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.9692595-CDS-H-elongata_contig8833:8288..83951622931284.9692595-CDS-H-elongata_contig8833:8288..8395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8833 8289..8395 +
1691679773.2963285-CDS-H-elongata_contig8833:8288..83951691679773.2963285-CDS-H-elongata_contig8833:8288..8395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8833 8289..8395 +
1622931284.9813025-CDS-H-elongata_contig8833:9115..92091622931284.9813025-CDS-H-elongata_contig8833:9115..9209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8833 9116..9209 +
1691679773.3106441-CDS-H-elongata_contig8833:9115..92091691679773.3106441-CDS-H-elongata_contig8833:9115..9209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8833 9116..9209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8833.16360.1prot_H-elongata_contig8833.16360.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8833 8289..9209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8833.16360.1

>prot_H-elongata_contig8833.16360.1 ID=prot_H-elongata_contig8833.16360.1|Name=mRNA_H-elongata_contig8833.16360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QESTLHLVLRLRGGVYDPSLAALAKTFNTEKMVCRKCYARLPPRAKNCRK
KKCGHTNQLRPKKKLK*
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mRNA from alignment at H-elongata_contig8833:8289..9209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8833.16360.1 ID=mRNA_H-elongata_contig8833.16360.1|Name=mRNA_H-elongata_contig8833.16360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=921bp|location=Sequence derived from alignment at H-elongata_contig8833:8289..9209+ (Himanthalia elongata Himel1 dioecious)
CAGGAGTCCACTCTTCACCTCGTGCTCCGTCTCCGTGGAGGCGTGTACGA
CCCTTCCCTAGCCGCTCTGGCTAAGACCTTCAACACGGAGAAGATGGTGT
GCCGCAAGTGAGGCTTTTTCACCTAGGGGGTTTAAAAGGGGTCCGACAAT
GTTATATATTTCGCGATCGATTGGGCATACGTAAATCCTTGTCAGAAAAA
GAGAAAATGCTATATGACCTAGGTTTCCACCATTGAATATGGTACTTGTG
GTAGAAGATCAATTACAGTGTTATAATGTGGTCGGCCGCAGTTAGGGGGT
GACATTTTAACGCCAGAAGCAATAATATCCTGTAGCCTTTAAGTTTTCCT
CTTGAAAAAGGGTGGTTGGACTCTTCGCAAGATGTGCGGTCAAGGCCTAT
CTACCCTGTTGTTGTTGTTGTTGTTGTTGTTGGTAGCACATTTAGCAGGA
GATCAACAGGATTTGGTTGCCTTCTGCTCGTGGTCAGCTGAAAAGCGAAA
AATAATTTTCCCTTGTCCCCCTAGGTTGCAATCATTTCCGCAGAAGATGA
TTTGAGGGAAATTTGAAAAAAACGGAATGGGACTTGGTCGTATACTTTTA
AATATATAAAAATATCTGTATAGGACCAAGAACAAGTTGGCATGTGCCAC
GAGTAAGAAACCAAGACAAAATATCGAGTGGTGCGTCGCACAGCCACCCC
CCATATATTCAGTTTTGCCACACACCCCATCTCCCGCCCGAAATATACAA
CCAAACCGTGCGGTGTCAGCTCTTGCCTCGCTAAAACGCCTTTTGTTTTG
TTTTGTCTTGTATATAATATGGAACAGGTGCTACGCGCGCTTGCCCCCTC
GGGCCAAAAACTGCCGCAAAAAGAAGTGCGGGCACACGAACCAACTCCGC
CCGAAGAAGAAGCTGAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig8833:8289..9209+

>mRNA_H-elongata_contig8833.16360.1 ID=mRNA_H-elongata_contig8833.16360.1|Name=mRNA_H-elongata_contig8833.16360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig8833:8289..9209+ (Himanthalia elongata Himel1 dioecious)
CAGGAGTCCACTCTTCACCTCGTGCTCCGTCTCCGTGGAGGCGTGTACGA
CCCTTCCCTAGCCGCTCTGGCTAAGACCTTCAACACGGAGAAGATGGTGT
GCCGCAACAGGAGTCCACTCTTCACCTCGTGCTCCGTCTCCGTGGAGGCG
TGTACGACCCTTCCCTAGCCGCTCTGGCTAAGACCTTCAACACGGAGAAG
ATGGTGTGCCGCAAGTGCTACGCGCGCTTGCCCCCTCGGGCCAAAAACTG
CCGCAAAAAGAAGTGCGGGCACACGAACCAACTCCGCCCGAAGAAGAAGC
TGAAATAAGTGCTACGCGCGCTTGCCCCCTCGGGCCAAAAACTGCCGCAA
AAAGAAGTGCGGGCACACGAACCAACTCCGCCCGAAGAAGAAGCTGAAAT
AA
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