mRNA_H-elongata_contig88271.16356.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88271.16356.1
Unique NamemRNA_H-elongata_contig88271.16356.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88271.16356.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 5.300e-87
Identity = 161/286 (56.29%), Postives = 197/286 (68.88%), Query Frame = 1 
Query:    1 MVPVAEAGYNRTRRVCVLCSAHLMAGDHTCPARYAIAIATPRADAYHKHGAIRHLSAAMESAAKKTRSGGEGGTRVGAEAVGEKPAIVGPLAALERVHGGPKALFSELVPMLSTEVPLDVCAHACQLVGASLLLASRMPSTETWVKLVVSIPHTAVDGLLECLHVAPARVKASRALFYAAKAP-PPGSGGALLEARSGVQIILDVLKSLPATTEPSVTPPASSASRLALRSLREWLCATLMLVVAGRPRAARALVASGGVALLCRQLEVGPTGVGVHACGVLTCAL 855
            ++ V+E GY R RR C  C+AH+ AG+++C ARYA+AIATP AD YHK  A+RHLSAAME AAKKT                    + GPL+A++RVHGG  A+F  LVPM+STEVPLDVC HACQL+GASL +ASR  S +TWV LV  IP   VDGLLECL VAPAR KA+RALFYAAK P   G+GG L+E+R GV I+L+VL+SLP      + PP ++A  +  + LR WLCATL  V+A RPRA +A +A  G+ LLCRQL  GP  + VH CGVL  AL
Sbjct:   29 LIHVSEPGYERPRRACQTCAAHIAAGEYSCNARYALAIATPGADTYHKQAAVRHLSAAMEDAAKKTVQSXXXXXXX----XXXXXXVRGPLSAIQRVHGGTPAVFEALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPKTWVDLVKVIPEGGVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIMLEVLESLP------LAPPPTAA--VETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLVAGPADIAVHVCGVLASAL 302
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BLAST of mRNA_H-elongata_contig88271.16356.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 7.240e-87
Identity = 160/286 (55.94%), Postives = 197/286 (68.88%), Query Frame = 1 
Query:    1 MVPVAEAGYNRTRRVCVLCSAHLMAGDHTCPARYAIAIATPRADAYHKHGAIRHLSAAMESAAKKTRSGGEGGTRVGAEAVGEKPAIVGPLAALERVHGGPKALFSELVPMLSTEVPLDVCAHACQLVGASLLLASRMPSTETWVKLVVSIPHTAVDGLLECLHVAPARVKASRALFYAAKAP-PPGSGGALLEARSGVQIILDVLKSLPATTEPSVTPPASSASRLALRSLREWLCATLMLVVAGRPRAARALVASGGVALLCRQLEVGPTGVGVHACGVLTCAL 855
            ++ V+E GY R RR C  C+AH+ AG+++C +RYA+AIATP AD YHK  A+RHLSAAME AAK     G                ++GPL+A++RVHGG  A+F  LVPM+STEVPLDVC HACQL+GASL +ASR  S ETWV LV  IP   VDGLLECL VAPAR KA+RALFYAAK P   G+GG L+E+R GV I+L+VL+SLP      + PP ++A  +  + LR WLCATL  V+A RPRA +A +A  G+ LLCRQL  GP  + VH CGVL  AL
Sbjct:  195 LMHVSEPGYERPRRACQTCAAHIAAGEYSCNSRYALAIATPGADMYHKQAAVRHLSAAMEDAAKNAVKSGXXXXXX----XXXXXXVLGPLSAIQRVHGGTPAVFQALVPMMSTEVPLDVCTHACQLLGASLFVASRQSSPETWVGLVKVIPEGCVDGLLECLRVAPARAKAARALFYAAKVPLAGGTGGELIESRGGVSIMLEVLESLP------LAPPPTAA--VETKGLRVWLCATLQPVMADRPRAVQAFLACRGIPLLCRQLAAGPADIAVHVCGVLASAL 468
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88271.16356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQZ1_9PHAE5.300e-8756.29FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FT64_ECTSI7.240e-8755.94E3 ubiquitin-protein ligase Nedd-4, putative n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88271contigH-elongata_contig88271:201..2323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.0
Seed ortholog evalue3.6e-77
Seed eggNOG ortholog2880.D7FT64
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size855
Cds size855
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88271.16356.1prot_H-elongata_contig88271.16356.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88271 201..2323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.4675293-CDS-H-elongata_contig88271:200..4581622931284.4675293-CDS-H-elongata_contig88271:200..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88271 201..458 -
1691679773.0787382-CDS-H-elongata_contig88271:200..4581691679773.0787382-CDS-H-elongata_contig88271:200..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88271 201..458 -
1622931284.4833362-CDS-H-elongata_contig88271:1044..12961622931284.4833362-CDS-H-elongata_contig88271:1044..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88271 1045..1296 -
1691679773.0951319-CDS-H-elongata_contig88271:1044..12961691679773.0951319-CDS-H-elongata_contig88271:1044..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88271 1045..1296 -
1622931284.5095456-CDS-H-elongata_contig88271:1978..23231622931284.5095456-CDS-H-elongata_contig88271:1978..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88271 1979..2323 -
1691679773.1085024-CDS-H-elongata_contig88271:1978..23231691679773.1085024-CDS-H-elongata_contig88271:1978..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88271 1979..2323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88271.16356.1

>prot_H-elongata_contig88271.16356.1 ID=prot_H-elongata_contig88271.16356.1|Name=mRNA_H-elongata_contig88271.16356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
MVPVAEAGYNRTRRVCVLCSAHLMAGDHTCPARYAIAIATPRADAYHKHG
AIRHLSAAMESAAKKTRSGGEGGTRVGAEAVGEKPAIVGPLAALERVHGG
PKALFSELVPMLSTEVPLDVCAHACQLVGASLLLASRMPSTETWVKLVVS
IPHTAVDGLLECLHVAPARVKASRALFYAAKAPPPGSGGALLEARSGVQI
ILDVLKSLPATTEPSVTPPASSASRLALRSLREWLCATLMLVVAGRPRAA
RALVASGGVALLCRQLEVGPTGVGVHACGVLTCAL
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mRNA from alignment at H-elongata_contig88271:201..2323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88271.16356.1 ID=mRNA_H-elongata_contig88271.16356.1|Name=mRNA_H-elongata_contig88271.16356.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2123bp|location=Sequence derived from alignment at H-elongata_contig88271:201..2323- (Himanthalia elongata Himel1 dioecious)
ATGGTCCCCGTAGCGGAGGCGGGCTATAATCGCACGCGCCGAGTGTGCGT
GTTGTGTTCGGCGCACCTTATGGCCGGCGACCATACCTGCCCGGCGCGGT
ACGCCATCGCGATCGCTACCCCTCGCGCCGACGCCTACCACAAGCATGGT
GCCATTCGGCACCTGTCGGCAGCCATGGAGTCAGCAGCAAAGAAGACGCG
CTCGGGCGGCGAAGGAGGAACGAGGGTCGGTGCCGAGGCGGTGGGAGAAA
AACCTGCAATCGTCGGCCCGCTGGCAGCGCTCGAGCGTGTTCACGGAGGT
CCCAAAGCGTTGTTCTCGGAGTTAGTGCCAATGCTTTCGACGGAGGTGGG
TCTCGTGAGAAAGCGCATTGTTTGGGGGAGGGTGAGGAGGGGGCGGGGGT
CGGAGAGGGGGAGGGGGTTGTTTTATCGTGTGAAGAGTTTGATCCCCGGT
TTTGTGCCCTCGCTCCTGATGGTATATCTACCGTGTTTGTCGTTCGGCTT
GATCGGATGCTGAAAAAGCATGATGCCGACCGCATGTGCCTCGTGTACGC
TACCTCTGCCGTCACCGGTATTGCTGAGTCGGTACCTCTTAAGCCCCTAT
TAGTACTTGTATAACTCACGATATATATATATATAATATAATATAAGTAT
ATACATGCATAGGCTCTCTCTCTCTATATATATATATCGATGTAGGATAA
GTTATGTCTCAACGTACGTCTGGAGTAGGTATACCCTGATATACCAGGTG
CAGTATGAGTTTTATGAGCGCTTAAGCATTTGAGTGGGGAAAGCTGTCAT
TCGTATTTAATTTTTATTTTTTTCATTTATATTGGTACGTTACGAAGTAC
TTGTGTTCCGCCCCCATTACATAAACGCACACAACACGTTCCTCGTTCGC
GGCGGTCCACGGAACGGTCTGCTGTTTCTCTGGGGTGCGCACCTTTTCCG
CCGGATATAACAACGGGGACGCCCCTTTCACTATCCATGCCCCCTCCCCC
CTCCTCTGGCGACCTTTCTCTCTTCAGGTCCCCCTGGACGTCTGCGCCCA
CGCCTGTCAGCTCGTAGGAGCCTCGCTGCTCTTGGCCTCGAGGATGCCGT
CGACAGAAACCTGGGTGAAGCTGGTGGTCTCTATCCCCCACACCGCGGTG
GACGGGTTGCTCGAGTGTCTGCACGTTGCTCCGGCGAGGGTGAAGGCGTC
GAGGGCCTTGTTCTACGCAGCCAAGGCCCCTCCTCCGGGAAGCGGGGGGG
CGCTCCTCGAGGCTAGGAGCGGAGTACAGGTATGATATTATAAATGTTTT
TGTTGTTGTTTTATTTTTAACATAACCGCGGAATCCGGCCGGCCCTGTCA
TGCTATCAATAGCCATTCTAGACTACTCGTATAGACCCTCCCCCCTCCCA
ATGGGGAATCGATCTGTGTATGTATGTGTGTGTGTTTGGGTGGCTGGCAA
CGTTGTCCGTAGGGATGTTGCTACATTTTGTGGAACGCTCCATTCGTGGG
GGGAGGGAGTCGACAACAGCCCAGGCTAAAATAAAAAGGCACCAAGCTTC
CTCATCGTTTTCGGCTTTCTTCTCCCTTTTTCTCTCTCTCTCTTCTCCTT
TCCGCCTCGAAAATTTCGCTTAACGCCTCCTTCACTTGAAATCAATCCTC
CTTGATATAGTGAAAAAGAGAATACCGGCCGATCAACGATCGGTTCGTCG
ACGCGCTGGTGCTGGATCCCCCCCCCCCCACCCCCACATCCCTCCTCCTA
ACACATGATATACTGAAACCGAATGAGCATCGTCGAACATGCTTTTTTTC
TCACCCCCCAGTTTCTCCCATTATTTTCCCTTTTTGACCCTAAATGAACT
CCTGTGGCTGTTAAGATAATTCTCGACGTCCTAAAGTCTCTCCCCGCGAC
CACGGAGCCGTCGGTGACGCCACCGGCTTCTTCTGCTTCTAGATTGGCTT
TGAGATCGCTGCGGGAGTGGTTATGCGCTACCCTAATGCTTGTCGTCGCC
GGCCGGCCTCGTGCGGCGCGGGCACTCGTGGCCTCGGGAGGCGTCGCTCT
TCTCTGTCGCCAGCTCGAGGTGGGGCCCACCGGTGTTGGCGTGCACGCAT
GTGGGGTGCTCACGTGCGCCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig88271:201..2323-

>mRNA_H-elongata_contig88271.16356.1 ID=mRNA_H-elongata_contig88271.16356.1|Name=mRNA_H-elongata_contig88271.16356.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig88271:201..2323- (Himanthalia elongata Himel1 dioecious)
ATGGTCCCCGTAGCGGAGGCGGGCTATAATCGCACGCGCCGAGTGTGCGT
GTTGTGTTCGGCGCACCTTATGGCCGGCGACCATACCTGCCCGGCGCGGT
ACGCCATCGCGATCGCTACCCCTCGCGCCGACGCCTACCACAAGCATGGT
GCCATTCGGCACCTGTCGGCAGCCATGGAGTCAGCAGCAAAGAAGACGCG
CTCGGGCGGCGAAGGAGGAACGAGGGTCGGTGCCGAGGCGGTGGGAGAAA
AACCTGCAATCGTCGGCCCGCTGGCAGCGCTCGAGCGTGTTCACGGAGGT
CCCAAAGCGTTGTTCTCGGAGTTAGTGCCAATGCTTTCGACGGAGATGGT
CCCCGTAGCGGAGGCGGGCTATAATCGCACGCGCCGAGTGTGCGTGTTGT
GTTCGGCGCACCTTATGGCCGGCGACCATACCTGCCCGGCGCGGTACGCC
ATCGCGATCGCTACCCCTCGCGCCGACGCCTACCACAAGCATGGTGCCAT
TCGGCACCTGTCGGCAGCCATGGAGTCAGCAGCAAAGAAGACGCGCTCGG
GCGGCGAAGGAGGAACGAGGGTCGGTGCCGAGGCGGTGGGAGAAAAACCT
GCAATCGTCGGCCCGCTGGCAGCGCTCGAGCGTGTTCACGGAGGTCCCAA
AGCGTTGTTCTCGGAGTTAGTGCCAATGCTTTCGACGGAGGTCCCCCTGG
ACGTCTGCGCCCACGCCTGTCAGCTCGTAGGAGCCTCGCTGCTCTTGGCC
TCGAGGATGCCGTCGACAGAAACCTGGGTGAAGCTGGTGGTCTCTATCCC
CCACACCGCGGTGGACGGGTTGCTCGAGTGTCTGCACGTTGCTCCGGCGA
GGGTGAAGGCGTCGAGGGCCTTGTTCTACGCAGCCAAGGCCCCTCCTCCG
GGAAGCGGGGGGGCGCTCCTCGAGGCTAGGAGCGGAGTACAGGTCCCCCT
GGACGTCTGCGCCCACGCCTGTCAGCTCGTAGGAGCCTCGCTGCTCTTGG
CCTCGAGGATGCCGTCGACAGAAACCTGGGTGAAGCTGGTGGTCTCTATC
CCCCACACCGCGGTGGACGGGTTGCTCGAGTGTCTGCACGTTGCTCCGGC
GAGGGTGAAGGCGTCGAGGGCCTTGTTCTACGCAGCCAAGGCCCCTCCTC
CGGGAAGCGGGGGGGCGCTCCTCGAGGCTAGGAGCGGAGTACAGATAATT
CTCGACGTCCTAAAGTCTCTCCCCGCGACCACGGAGCCGTCGGTGACGCC
ACCGGCTTCTTCTGCTTCTAGATTGGCTTTGAGATCGCTGCGGGAGTGGT
TATGCGCTACCCTAATGCTTGTCGTCGCCGGCCGGCCTCGTGCGGCGCGG
GCACTCGTGGCCTCGGGAGGCGTCGCTCTTCTCTGTCGCCAGCTCGAGGT
GGGGCCCACCGGTGTTGGCGTGCACGCATGTGGGGTGCTCACGTGCGCCC
TCATAATTCTCGACGTCCTAAAGTCTCTCCCCGCGACCACGGAGCCGTCG
GTGACGCCACCGGCTTCTTCTGCTTCTAGATTGGCTTTGAGATCGCTGCG
GGAGTGGTTATGCGCTACCCTAATGCTTGTCGTCGCCGGCCGGCCTCGTG
CGGCGCGGGCACTCGTGGCCTCGGGAGGCGTCGCTCTTCTCTGTCGCCAG
CTCGAGGTGGGGCCCACCGGTGTTGGCGTGCACGCATGTGGGGTGCTCAC
GTGCGCCCTC
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