mRNA_H-elongata_contig88241.16354.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.670e-27 Identity = 74/188 (39.36%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
DL G +GG + M+ DDFTR + FLKHKSDA A R + A +G+ + ++R+D E G +F S EL IK+E P Y+PQYNGV ER LGL+ + + VL V K+++LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P
Sbjct: 730 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 915
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.680e-27 Identity = 74/188 (39.36%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
DL G +GG + M+ DDFTR + FLKHKSDA A R + A +G+ + ++R+D E G +F S EL IK+E P Y+PQYNGV ER LGL+ + + VL V K+++LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P
Sbjct: 437 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 622
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 114 bits (285), Expect = 3.020e-27 Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTD-GERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
DL G +GG + ++ DDFTR + FL++KSDA +A R + A G+ + ++R+D G + G F S EL IK+E P Y+PQYNGV ER LGL+ + + VL V K+++LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P
Sbjct: 98 DLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRP 283
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.910e-26 Identity = 70/173 (40.46%), Postives = 89/173 (51.45%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPE-GLKIGVIRTDGERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTVVLLRGVME-----GKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPF 501
+L G Q +GGN + ++ DD TR+ V FLKHKSDA A + D A ++ V RTDG E GQF R GIK+E PP TP+YNGV ERALGLL D + E S LWAEA++ AC N ++ SP EL++G P + PF
Sbjct: 200 NLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 114 bits (286), Expect = 2.310e-26 Identity = 66/174 (37.93%), Postives = 94/174 (54.02%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGL--KIGVIRTDGERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV---VLLRGVMEGKSNR--LWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPF 501
DL G + +GGN + ++ DDF+R+ V FLKHKSDA + D + +G+ ++ + RTDG E GQF R GIK E PP+TP+YNGV ERALGL+ D + + + N LWAEA++ AC N + S + D S YE+++ P + PF
Sbjct: 27 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLAD-YRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF 199
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 114 bits (285), Expect = 3.510e-26 Identity = 73/188 (38.83%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLL-------RDKTVVLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
DL G +GG + M+ DDFTR + FLK KSDA +A R + A +G+ + ++R+D E G +F S EL IK+E P Y+PQYNGV ER LGL+ R + VL V K++RLWAEAM +AC+ N S+ SPYE+W+G + PF Y R +P
Sbjct: 636 DLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRP 821
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 114 bits (285), Expect = 3.660e-26 Identity = 72/188 (38.30%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
DL G +GG + M+ DDFTR + FL++KSDA +A R + A G+ + ++R+D E G +F S EL IK+E P Y+PQYNGV ER LGL+ + + VL V K+++LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P
Sbjct: 251 DLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 436
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 113 bits (282), Expect = 8.860e-26 Identity = 71/188 (37.77%), Postives = 98/188 (52.13%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLK--IGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
DL G +GG + M+ DDFTR + FL++KSDA +A R + A G+ + ++R+D E G +F S EL IK+E P Y+PQYNGV ER LGL+ + + VL V K+++LWAEAM +AC+ N S+ PYE+WYG P PF Y R +P
Sbjct: 196 DLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRP 381
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A5N6LHD7_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LHD7_9ASTR) HSP 1 Score: 112 bits (281), Expect = 1.190e-25 Identity = 68/176 (38.64%), Postives = 97/176 (55.11%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFAPEGLKIGVIRTD-GERE*HGQFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTVV-LLRGVMEGKS--NRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGY 516
DL G Q LGGN + L IDD+TR V FL KS + + G KI V+RTD G +F SF GIKRE PYTP++NGVVER +++T++ + R +++ K N LWAE +A + + NR + ++ DT+P+E WYG +PT ++ FG + Y
Sbjct: 511 DLCGAMQTPSLGGNLYYFLLIDDYTRMCWVYFLSAKSQTFSKFKAFKAMVETESGYKIKVLRTDRGGEFCSNEFNSFCESNGIKRELTIPYTPEHNGVVER-----KNRTIMEMTRSMLKEKQLPNYLWAEGVATSIYLTNRTLTKAI-KDTTPFEAWYGEKPTVHHLRVFGCITY 680
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.210e-25 Identity = 73/189 (38.62%), Postives = 98/189 (51.85%), Query Frame = 1
Query: 1 DLSGPFQETPLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDIINDCFA---PEGLKIGVIRTDGERE*HG-QFLSFLRELGIKRESKPPYTPQYNGVVERALGLLRDKTV-------VLLRGVMEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 534
DL G +GG + M+ DDFTR + FLK++SDA A R + A P ++I +R+D E G +F S EL IK+E P Y+PQYNGV ER LGL+ + + VL V K+++LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P
Sbjct: 318 DLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRP 503 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88241.16354.1 >prot_H-elongata_contig88241.16354.1 ID=prot_H-elongata_contig88241.16354.1|Name=mRNA_H-elongata_contig88241.16354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp MEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPback to top mRNA from alignment at H-elongata_contig88241:1357..1890+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88241.16354.1 ID=mRNA_H-elongata_contig88241.16354.1|Name=mRNA_H-elongata_contig88241.16354.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig88241:1357..1890+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88241:1357..1890+ >mRNA_H-elongata_contig88241.16354.1 ID=mRNA_H-elongata_contig88241.16354.1|Name=mRNA_H-elongata_contig88241.16354.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig88241:1357..1890+ (Himanthalia elongata Himel1 dioecious)back to top |