mRNA_H-elongata_contig88232.16353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88232.16353.1
Unique NamemRNA_H-elongata_contig88232.16353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88232.16353.1 vs. uniprot
Match: A0A6H5KWX2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX2_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.040e-58
Identity = 116/171 (67.84%), Postives = 138/171 (80.70%), Query Frame = 1 
Query:   13 RETLLVLDDVWDAVVVEAFETIGLSLLVTTREPLIARLATP-SPSGRKRLIGPLGPLSPEEATAAAAKGAATRRIPHKEAGQLLDRTGRCPLAVGVVASTLKQALTPLDWTNTYARVRKTYIGLQKQREKDSDGESIGPKEETEDRITASIAAGLSNMPEENQV---CLCL 513
            R TLLVLDDVW+A VVEAFET+GLSLLVTTREPLIAR+A+P S +G  RLIGPLGPLS  EA +AAAK AATRR+P KEA QLLD+TGRCPLAVGVVASTLKQA  PLDW +T ++V+KT+ GL ++R   +       +++ EDR+TASIAAGLSNMPEENQ+    LC+
Sbjct:  119 RSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASPHSAAGVSRLIGPLGPLSDAEAISAAAKAAATRRVPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPLDWVSTSSKVKKTFAGLHRRRRVTTST----AEQDAEDRVTASIAAGLSNMPEENQMLYSALCI 285
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BLAST of mRNA_H-elongata_contig88232.16353.1 vs. uniprot
Match: D7G1G8_ECTSI (Kinesin light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G8_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 4.620e-58
Identity = 113/171 (66.08%), Postives = 136/171 (79.53%), Query Frame = 1 
Query:   13 RETLLVLDDVWDAVVVEAFETIGLSLLVTTREPLIARLATP-SPSGRKRLIGPLGPLSPEEATAAAAKGAATRRIPHKEAGQLLDRTGRCPLAVGVVASTLKQALTPLDWTNTYARVRKTYIGLQKQREKDSDGESIGPKEETEDRITASIAAGLSNMPEENQV---CLCL 513
            R TLLVLDDVW+A VVEAFET+GLSLLVTTREPLIAR+A+  + +G  RLIGPLGPLS  EAT+AAAK AATRR P KEA QLLD+TGRCPLAVGVVASTLKQA  PLDW +T ++V+KT+ GL ++R      ++   +++ EDR+TASIAAG SNMPEE Q+    LC+
Sbjct:   46 RSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLSGAEATSAAAKAAATRRAPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPLDWVSTSSKVKKTFAGLHRRRRV----KASTAEQDAEDRVTASIAAGFSNMPEETQMLYSALCI 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88232.16353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWX2_9PHAE1.040e-5867.84NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G1G8_ECTSI4.620e-5866.08Kinesin light chain n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88232contigH-elongata_contig88232:219..1381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size531
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88232.16353.1prot_H-elongata_contig88232.16353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88232 219..1381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.1046143-CDS-H-elongata_contig88232:218..4311622931284.1046143-CDS-H-elongata_contig88232:218..431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88232 219..431 -
1691679772.9108906-CDS-H-elongata_contig88232:218..4311691679772.9108906-CDS-H-elongata_contig88232:218..431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88232 219..431 -
1622931284.1197932-CDS-H-elongata_contig88232:772..9821622931284.1197932-CDS-H-elongata_contig88232:772..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88232 773..982 -
1691679772.9214637-CDS-H-elongata_contig88232:772..9821691679772.9214637-CDS-H-elongata_contig88232:772..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88232 773..982 -
1622931284.133801-CDS-H-elongata_contig88232:1273..13811622931284.133801-CDS-H-elongata_contig88232:1273..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88232 1274..1381 -
1691679772.9301796-CDS-H-elongata_contig88232:1273..13811691679772.9301796-CDS-H-elongata_contig88232:1273..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88232 1274..1381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88232.16353.1

>prot_H-elongata_contig88232.16353.1 ID=prot_H-elongata_contig88232.16353.1|Name=mRNA_H-elongata_contig88232.16353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MFSARETLLVLDDVWDAVVVEAFETIGLSLLVTTREPLIARLATPSPSGR
KRLIGPLGPLSPEEATAAAAKGAATRRIPHKEAGQLLDRTGRCPLAVGVV
ASTLKQALTPLDWTNTYARVRKTYIGLQKQREKDSDGESIGPKEETEDRI
TASIAAGLSNMPEENQVCLCLQLSLL*
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mRNA from alignment at H-elongata_contig88232:219..1381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88232.16353.1 ID=mRNA_H-elongata_contig88232.16353.1|Name=mRNA_H-elongata_contig88232.16353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-elongata_contig88232:219..1381- (Himanthalia elongata Himel1 dioecious)
ATGTTTTCAGCACGGGAGACACTATTGGTCCTGGATGACGTATGGGACGC
GGTTGTCGTCGAGGCGTTCGAGACCATCGGACTATCTCTGCTGGTTACTA
CCAGAGAGGTACGTATTTCTCGGAGGGGGGGTGGTTTTAGTAGAGGTTTG
ATGGCGTGTGTTATGTCAACCCTCTAAATATAATATATATATATATATAC
TTCTATACTTCTATATTATATACTGTAAATATATATCGCAGGTGCATTGT
TTTTATCTTTAGTTTGTTGCGCACTGTATTGTTTTCGAGGGGAGTAATGC
AGGTGTTACTGACTGTCGGGGGCGAGTTAGCCTTACACTAAACGCCACAG
TTTTTGTAATAGCGCTGATAAGGTCATCGCGCTGTCCCGACCCTCGCAGC
CTTTGATCGCTCGGCTAGCGACTCCGAGCCCATCAGGGAGAAAACGACTC
ATCGGTCCTCTTGGCCCGTTGTCCCCGGAAGAGGCCACGGCGGCAGCAGC
GAAGGGTGCGGCTACTCGGCGCATCCCACACAAGGAAGCGGGTCAGCTCT
TAGATCGCACGGGGCGTTGTCCCCTTGCCGTCGGCGTGGTGGCGTCCACA
CTTAAGCAGGTTGGGTTTTTTAACCGTCTTCTCTCTTACTGTAGCAAACG
TGAAATTTTGATTCTCTTGACGGTTTCTAAAGTATCTTGGGGTTTTAGGC
GAAAGATAGATAATCCGCGAAATTTCCTCCCATATAATATCATTTTTTTT
TTTTATTATTTTTTTTTTTTTTGCGGAATTAGGAAGGAATTACTCTGTTA
TCGGTGTTCCCTTTACCTTGATTTCCTTTACCCGGTAACGGTAACCCTTT
TAGACCTTTAGCCGGTAACGGTAACCCCTTTAGACCTTTACCCTTTAATC
CCTTCCCATTTTTACCCCGCCCGGTAAACGTGCTGTTACTCCTGGTCCAG
GCGCTAACCCCTTTGGATTGGACTAACACCTACGCCAGGGTCCGAAAGAC
TTACATTGGGCTCCAAAAACAAAGGGAGAAGGATAGCGACGGGGAAAGCA
TTGGTCCCAAAGAGGAAACAGAGGACAGGATCACTGCATCGATCGCTGCC
GGCCTGTCCAACATGCCGGAGGAGAATCAGGTGTGTTTGTGTTTACAATT
GTCATTGTTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig88232:219..1381-

>mRNA_H-elongata_contig88232.16353.1 ID=mRNA_H-elongata_contig88232.16353.1|Name=mRNA_H-elongata_contig88232.16353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig88232:219..1381- (Himanthalia elongata Himel1 dioecious)
ATGTTTTCAGCACGGGAGACACTATTGGTCCTGGATGACGTATGGGACGC
GGTTGTCGTCGAGGCGTTCGAGACCATCGGACTATCTCTGCTGGTTACTA
CCAGAGAGATGTTTTCAGCACGGGAGACACTATTGGTCCTGGATGACGTA
TGGGACGCGGTTGTCGTCGAGGCGTTCGAGACCATCGGACTATCTCTGCT
GGTTACTACCAGAGAGCCTTTGATCGCTCGGCTAGCGACTCCGAGCCCAT
CAGGGAGAAAACGACTCATCGGTCCTCTTGGCCCGTTGTCCCCGGAAGAG
GCCACGGCGGCAGCAGCGAAGGGTGCGGCTACTCGGCGCATCCCACACAA
GGAAGCGGGTCAGCTCTTAGATCGCACGGGGCGTTGTCCCCTTGCCGTCG
GCGTGGTGGCGTCCACACTTAAGCAGCCTTTGATCGCTCGGCTAGCGACT
CCGAGCCCATCAGGGAGAAAACGACTCATCGGTCCTCTTGGCCCGTTGTC
CCCGGAAGAGGCCACGGCGGCAGCAGCGAAGGGTGCGGCTACTCGGCGCA
TCCCACACAAGGAAGCGGGTCAGCTCTTAGATCGCACGGGGCGTTGTCCC
CTTGCCGTCGGCGTGGTGGCGTCCACACTTAAGCAGGCGCTAACCCCTTT
GGATTGGACTAACACCTACGCCAGGGTCCGAAAGACTTACATTGGGCTCC
AAAAACAAAGGGAGAAGGATAGCGACGGGGAAAGCATTGGTCCCAAAGAG
GAAACAGAGGACAGGATCACTGCATCGATCGCTGCCGGCCTGTCCAACAT
GCCGGAGGAGAATCAGGTGTGTTTGTGTTTACAATTGTCATTGTTATAGG
CGCTAACCCCTTTGGATTGGACTAACACCTACGCCAGGGTCCGAAAGACT
TACATTGGGCTCCAAAAACAAAGGGAGAAGGATAGCGACGGGGAAAGCAT
TGGTCCCAAAGAGGAAACAGAGGACAGGATCACTGCATCGATCGCTGCCG
GCCTGTCCAACATGCCGGAGGAGAATCAGGTGTGTTTGTGTTTACAATTG
TCATTGTTATAG
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