mRNA_H-elongata_contig88218.16352.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88218.16352.1
Unique NamemRNA_H-elongata_contig88218.16352.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88218.16352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88218contigH-elongata_contig88218:1500..2013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88218.16352.1prot_H-elongata_contig88218.16352.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88218 1529..1849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.0241582-UTR-H-elongata_contig88218:1499..15281622931284.0241582-UTR-H-elongata_contig88218:1499..1528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88218 1500..1528 +
1691679772.8669777-UTR-H-elongata_contig88218:1499..15281691679772.8669777-UTR-H-elongata_contig88218:1499..1528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88218 1500..1528 +
1622931284.0565853-UTR-H-elongata_contig88218:1849..20131622931284.0565853-UTR-H-elongata_contig88218:1849..2013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88218 1850..2013 +
1691679772.8973548-UTR-H-elongata_contig88218:1849..20131691679772.8973548-UTR-H-elongata_contig88218:1849..2013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88218 1850..2013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931284.040757-CDS-H-elongata_contig88218:1528..18491622931284.040757-CDS-H-elongata_contig88218:1528..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88218 1529..1849 +
1691679772.886445-CDS-H-elongata_contig88218:1528..18491691679772.886445-CDS-H-elongata_contig88218:1528..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88218 1529..1849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88218.16352.1

>prot_H-elongata_contig88218.16352.1 ID=prot_H-elongata_contig88218.16352.1|Name=mRNA_H-elongata_contig88218.16352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MGMSMYYCREGRGGSLITIDFKIGIYRHSKVGDEIAFDDLYVSMIVSTNQ
DIVLQNIAAHAMQILYSGNDGSSKKDIGKMEVSTIESLGFLSQRTKLLYR
LLRVVL*
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mRNA from alignment at H-elongata_contig88218:1500..2013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88218.16352.1 ID=mRNA_H-elongata_contig88218.16352.1|Name=mRNA_H-elongata_contig88218.16352.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=514bp|location=Sequence derived from alignment at H-elongata_contig88218:1500..2013+ (Himanthalia elongata Himel1 dioecious)
CATCAGATGAAATAGGGTTCGAAAGGTGCATGGGGATGTCGATGTATTAT
TGTAGAGAAGGTAGAGGTGGATCACTGATTACAATTGATTTCAAAATCGG
CATTTACAGGCATTCCAAAGTCGGAGACGAGATAGCCTTTGACGATCTAT
ACGTTTCGATGATTGTGAGCACAAATCAGGACATCGTTCTCCAAAACATT
GCAGCACACGCGATGCAAATTTTATACAGTGGCAACGATGGGTCGAGTAA
GAAAGACATAGGAAAAATGGAAGTTTCCACCATTGAGTCACTCGGTTTTC
TATCTCAACGTACAAAACTACTGTATCGTTTATTGAGAGTAGTATTGTAA
CTCGGTAGCAGTGCTAAAATAGACCGACATGCTATTTTCCTGGGGGCAAA
CTACATCCTCTTGGGACATTAAGGCTCTTGTGCATGATGTCATATATATA
TACTTGTCTATAGCCGTGAATTAGGCGGGTAAAGGTCATCGAAAAGCGTT
AGCCACTATGGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig88218:1500..2013+

>mRNA_H-elongata_contig88218.16352.1 ID=mRNA_H-elongata_contig88218.16352.1|Name=mRNA_H-elongata_contig88218.16352.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig88218:1500..2013+ (Himanthalia elongata Himel1 dioecious)
ATGGGGATGTCGATGTATTATTGTAGAGAAGGTAGAGGTGGATCACTGAT
TACAATTGATTTCAAAATCGGCATTTACAGGCATTCCAAAGTCGGAGACG
AGATAGCCTTTGACGATCTATACGTTTCGATGATTGTGAGCACAAATCAG
GACATCGTTCTCCAAAACATTGCAGCACACGCGATGCAAATTTTATACAG
TGGCAACGATGGGTCGAGTAAGAAAGACATAGGAAAAATGGAAGTTTCCA
CCATTGAGTCACTCGGTTTTCTATCTCAACGTACAAAACTACTGTATCGT
TTATTGAGAGTAGTATTGTAAATGGGGATGTCGATGTATTATTGTAGAGA
AGGTAGAGGTGGATCACTGATTACAATTGATTTCAAAATCGGCATTTACA
GGCATTCCAAAGTCGGAGACGAGATAGCCTTTGACGATCTATACGTTTCG
ATGATTGTGAGCACAAATCAGGACATCGTTCTCCAAAACATTGCAGCACA
CGCGATGCAAATTTTATACAGTGGCAACGATGGGTCGAGTAAGAAAGACA
TAGGAAAAATGGAAGTTTCCACCATTGAGTCACTCGGTTTTCTATCTCAA
CGTACAAAACTACTGTATCGTTTATTGAGAGTAGTATTGTAA
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