prot_H-elongata_contig88215.16351.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88215.16351.1
Unique Nameprot_H-elongata_contig88215.16351.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
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BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Match: D7FI80_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI80_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.460e-63
Identity = 101/124 (81.45%), Postives = 109/124 (87.90%), Query Frame = 0 
Query:    1 MTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKELSVGHGGWLYMLRDPAGAGVDTAAAIRRMREARKRAARGGGVKEVKTLAALQQEVKAAKGMLVVVDFYADWCGP 124
            M+DGSVKRVQ   RDTVEDVCERLGC+ +AGVA+E +PE AVE S TLKELSVGHGGWLYMLRDP   G DTAAAIRRM+EAR RA +GGGVKEVKTL ALQQE+KAAKGMLVVVDFYADWCGP
Sbjct:   45 MSDGSVKRVQAQARDTVEDVCERLGCEPEAGVAIEEDPEAAVEVSSTLKELSVGHGGWLYMLRDPDDPGADTAAAIRRMKEARTRAIKGGGVKEVKTLKALQQELKAAKGMLVVVDFYADWCGP 168
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BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Match: A0A836CNH4_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 6.340e-38
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 0 
Query:    1 MTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKELSVGHGGWLYMLRDPAGAGVDTAAAIRRMREARKRAARGGGVKEVKTLAALQQEVKAAKGMLVVVDFYADWCGP 124
            + DGSVKRV  +P D+V DVCE++ CD + GVA +A+    VE + ++KEL + +G WLY+ RDPA AG   A AI RM++ R+R  +GGGV E  T+A L QE+K A  MLVVVDF+ADWCGP
Sbjct:   51 LPDGSVKRVDASPSDSVADVCEKIDCDYEHGVATDADFANCVEGTSSVKELKLANGAWLYLRRDPAEAGRSNAEAIMRMKKRRERELKGGGVVECLTVAKLDQEIKEAGNMLVVVDFFADWCGP 174
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BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Match: A0A7S2UWJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWJ8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.110e-11
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 0 
Query:    1 MTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKELSVGHGGWLYM-LRDPAGAGVDTAAAIRRMREARKRAARGG-GVKEVKTLAALQQEVKAAKGMLVVVDFYADWCGP 124
            M +G +KRV+  P  T+ D+ +  G + +  ++++ E  E  + S  +K + V HG  LY  + D  G+  D+A+   R+   + R  R G  V     +      VK A   L+VVDFYADWCGP
Sbjct:   44 MPNGVIKRVEAKPSHTINDIKDMAGLERKKRLSLDEERTELTQGSDVIKRIGVKHGDILYAKMADMDGS--DSASLQARLASTKTRRNRAGTSVPHADNMKDFDMAVKRAGSRLLVVDFYADWCGP 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88215.16351.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI80_ECTSI1.460e-6381.45Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A836CNH4_9STRA6.340e-3854.03Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S2UWJ8_9STRA5.110e-1133.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 83..124
e-value: 1.2E-7
score: 33.4
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 78..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88215contigH-elongata_contig88215:344..2538 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88215.16351.1mRNA_H-elongata_contig88215.16351.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88215 320..2538 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88215.16351.1 ID=prot_H-elongata_contig88215.16351.1|Name=mRNA_H-elongata_contig88215.16351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MTDGSVKRVQVTPRDTVEDVCERLGCDVQAGVAVEAEPEEAVEASCTLKE
LSVGHGGWLYMLRDPAGAGVDTAAAIRRMREARKRAARGGGVKEVKTLAA
LQQEVKAAKGMLVVVDFYADWCGPW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf