mRNA_H-elongata_contig121322.1635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121322.1635.1
Unique NamemRNA_H-elongata_contig121322.1635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121322.1635.1 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.360e-12
Identity = 38/97 (39.18%), Postives = 47/97 (48.45%), Query Frame = 1 
Query:   79 PLRSRYELRAVLHHMGSTAFNGHYLTDVVRREKGEV--------------------RSEVEVASWMRHNDDVVRSVSEGTALEGPAHHSACMCFYSL 309
            PLR+RYELR +LHH+G  AF GHY+TDV     G                      R       W R++D VV  V+E  AL G A  +  +CFYSL
Sbjct:  199 PLRARYELRGILHHLGRHAFAGHYVTDVREERSGXXXXXXXXXXXXXXXSQGGKTEREXXXGRGWSRYDDSVVSPVTEAEALGGEAQRTCYLCFYSL 295
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BLAST of mRNA_H-elongata_contig121322.1635.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.380e-9
Identity = 38/109 (34.86%), Postives = 49/109 (44.95%), Query Frame = 1 
Query:   79 PLRSRYELRAVLHHMGSTAFNGHYLTDVVRREKGEVRS------------------------------EVEVASWMRHNDDVVRSVSEGTALEGPAHHSACMCFYSLAK 315
            PLR+RYELR +LHH+G  AF GHY+TDV     G  R                               E     W R++D VV  ++E  AL G A  +  +CFYSL +
Sbjct: 1381 PLRARYELRGILHHLGRHAFAGHYVTDVREEGGGGGRXXXXXXXXXXXXXXXXGIVGAAGSWGXXXXREGGGRGWKRYDDSVVSPLTEAEALGGEAQRTCYLCFYSLVE 1489
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BLAST of mRNA_H-elongata_contig121322.1635.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.530e-8
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   79 PLRSRYELRAVLHHMGSTAFNGHYLTDVVRREKGEVRSEVEVASWMRHNDDVVRSVSEGTALEGPAHHSACMCFYSLAK 315
            PL++RY L AVLHH+G  AF GHY+  V        RS    A W R++D  VR V+E  A+ G A  +  + FY L +
Sbjct: 1279 PLKARYRLAAVLHHLGPHAFAGHYVACV--------RSGGGAARWRRYDDSEVRDVAERDAVGGAARATCYLAFYELCE 1349
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BLAST of mRNA_H-elongata_contig121322.1635.1 vs. uniprot
Match: A0A024UVE8_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVE8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-6
Identity = 32/94 (34.04%), Postives = 45/94 (47.87%), Query Frame = 1 
Query:   22 HATNAPSEELGEARRVGIRPLRSRYELRAVLHHMGSTAFNGHYLTDVVRREKGEVRSEVEVASWMRHNDDVVRSVSEGTALEGPAHHSACMCFY 303
            HA++A       A +VG +P  S Y+L+ ++ H+G TA  GHY+TDV   +K           W R ND +V  V     L+G    S  M  Y
Sbjct:  758 HASDANKHAAAPATKVGAKP--SPYDLKCIVRHLGRTANEGHYVTDVHDADK-----------WTRFNDTLVTEVESSQVLQGNGAKSGYMLVY 838
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BLAST of mRNA_H-elongata_contig121322.1635.1 vs. uniprot
Match: A0A067C580_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C580_SAPPC)

HSP 1 Score: 51.2 bits (121), Expect = 3.680e-5
Identity = 23/71 (32.39%), Postives = 36/71 (50.70%), Query Frame = 1 
Query:   91 RYELRAVLHHMGSTAFNGHYLTDVVRREKGEVRSEVEVASWMRHNDDVVRSVSEGTALEGPAHHSACMCFY 303
            +Y L++++ H+G TA  GHY+TDV  +             W R+ND +V  V +   L GP   +  + FY
Sbjct: 1358 KYRLKSIVRHLGRTAGEGHYITDVHNQ----------ATKWTRYNDALVTEVDQAAVLTGPGAETGYLLFY 1418
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BLAST of mRNA_H-elongata_contig121322.1635.1 vs. uniprot
Match: T0R7M6_SAPDV (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R7M6_SAPDV)

HSP 1 Score: 50.8 bits (120), Expect = 4.870e-5
Identity = 23/70 (32.86%), Postives = 35/70 (50.00%), Query Frame = 1 
Query:   94 YELRAVLHHMGSTAFNGHYLTDVVRREKGEVRSEVEVASWMRHNDDVVRSVSEGTALEGPAHHSACMCFY 303
            Y L++++ H+G TA  GHY+TDV  +             W R+ND +V  V +   L GP   +  + FY
Sbjct:  740 YRLKSIVRHLGRTAGEGHYITDVHNQS----------TKWTRYNDALVTEVDQAAVLTGPGAETGYLLFY 799
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121322.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KST6_9PHAE9.360e-1239.18RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7G2P5_ECTSI2.380e-934.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKZ9_9STRA1.530e-841.77USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024UVE8_9STRA1.170e-634.04Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Apha... [more]
A0A067C580_SAPPC3.680e-532.39Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0R7M6_SAPDV4.870e-532.86Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Sapr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121322contigH-elongata_contig121322:1066..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog2880.D7G2P5
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.8660343-CDS-H-elongata_contig121322:1065..13831622929713.8660343-CDS-H-elongata_contig121322:1065..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121322 1066..1383 +
1691679129.1334236-CDS-H-elongata_contig121322:1065..13831691679129.1334236-CDS-H-elongata_contig121322:1065..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121322 1066..1383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121322.1635.1prot_H-elongata_contig121322.1635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121322 1066..1383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121322.1635.1

>prot_H-elongata_contig121322.1635.1 ID=prot_H-elongata_contig121322.1635.1|Name=mRNA_H-elongata_contig121322.1635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MKRFCTRHATNAPSEELGEARRVGIRPLRSRYELRAVLHHMGSTAFNGHY
LTDVVRREKGEVRSEVEVASWMRHNDDVVRSVSEGTALEGPAHHSACMCF
YSLAK*
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mRNA from alignment at H-elongata_contig121322:1066..1383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121322.1635.1 ID=mRNA_H-elongata_contig121322.1635.1|Name=mRNA_H-elongata_contig121322.1635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig121322:1066..1383+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCGATTTTGTACCCGCCACGCCACCAACGCTCCTTCCGAGGAACT
CGGGGAGGCGAGAAGGGTGGGGATCCGTCCACTGCGGTCGCGGTACGAGC
TCCGTGCCGTCTTACACCACATGGGAAGTACTGCCTTCAACGGGCATTAC
TTGACCGATGTGGTGAGGAGGGAGAAGGGGGAGGTGCGATCAGAAGTGGA
GGTCGCAAGCTGGATGCGCCACAACGACGATGTCGTGAGATCCGTGTCTG
AAGGGACAGCGCTCGAGGGCCCCGCTCACCACTCAGCATGTATGTGCTTC
TATTCGTTGGCGAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig121322:1066..1383+

>mRNA_H-elongata_contig121322.1635.1 ID=mRNA_H-elongata_contig121322.1635.1|Name=mRNA_H-elongata_contig121322.1635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig121322:1066..1383+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCGATTTTGTACCCGCCACGCCACCAACGCTCCTTCCGAGGAACT
CGGGGAGGCGAGAAGGGTGGGGATCCGTCCACTGCGGTCGCGGTACGAGC
TCCGTGCCGTCTTACACCACATGGGAAGTACTGCCTTCAACGGGCATTAC
TTGACCGATGTGGTGAGGAGGGAGAAGGGGGAGGTGCGATCAGAAGTGGA
GGTCGCAAGCTGGATGCGCCACAACGACGATGTCGTGAGATCCGTGTCTG
AAGGGACAGCGCTCGAGGGCCCCGCTCACCACTCAGCATGTATGTGCTTC
TATTCGTTGGCGAAGTAGATGAAGCGATTTTGTACCCGCCACGCCACCAA
CGCTCCTTCCGAGGAACTCGGGGAGGCGAGAAGGGTGGGGATCCGTCCAC
TGCGGTCGCGGTACGAGCTCCGTGCCGTCTTACACCACATGGGAAGTACT
GCCTTCAACGGGCATTACTTGACCGATGTGGTGAGGAGGGAGAAGGGGGA
GGTGCGATCAGAAGTGGAGGTCGCAAGCTGGATGCGCCACAACGACGATG
TCGTGAGATCCGTGTCTGAAGGGACAGCGCTCGAGGGCCCCGCTCACCAC
TCAGCATGTATGTGCTTCTATTCGTTGGCGAAGTAG
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