mRNA_H-elongata_contig8819.16348.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8819.16348.1
Unique NamemRNA_H-elongata_contig8819.16348.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Match: D7G8P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P4_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.040e-33
Identity = 89/189 (47.09%), Postives = 114/189 (60.32%), Query Frame = 1 
Query:    1 MGRIDKKAKHRRPVSETSAAINSRGQRKRALKKASLVRKKGLVELARRGPRGNQ-------VSTATKIADPLVPELTSHQDTLSNSTSNKGKRTLVAAELGQLNAVLATPSFQKDPFAAVQAHLRQTACPQASLVDRPVQASKKGYKYLRATNSAGSNEHPARITGLRTRVNERQRNAKPYKGRNAKMR 546
            MG+ID KAKHRRPVSE+  A+ SRGQRKRALKKASL++K GL     R  R ++       V+T  K   P  P L +        +SNKGKR+L+ +E+GQ+NAVL+ PSFQ+DPFAA+QAHLRQTA P   + D   +   KG       ++    +H     G      +R+  AKPYK RNAKMR
Sbjct:   19 MGKIDTKAKHRRPVSES--AVPSRGQRKRALKKASLIKKIGLTSKHVRQRRTDEDEKQVPSVATDEK-GIPSRPSLAAKGSAFQRVSSNKGKRSLMTSEMGQINAVLSAPSFQQDPFAAIQAHLRQTALPTPPMADCKARKPGKG-----KVSAKSVGQHAGETRG------DRKPKAKPYKARNAKMR 193
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BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Match: A0A835ZIC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIC9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.170e-8
Identity = 52/132 (39.39%), Postives = 70/132 (53.03%), Query Frame = 1 
Query:   31 RRPVSETSAAIN----SRGQRKRALKKASLVRKKGLV---------ELARR-GPRGNQVSTATKIADPLVPELTSHQDTLSNSTS--------NKGKRTLVAAELGQLNAVLATPSFQKDPFAAVQAHLRQT 360
            ++PVS   A  +    SRGQRKRA K+A+LVRK+ LV         E A+  G  G  + T T  A+         +   +   S        NKGKR++   EL QL AVLA  SF++DPFAA+QAH++ T
Sbjct:   16 KKPVSSAVAKPSDENLSRGQRKRATKRAALVRKRTLVTANVEQRKQEAAKGLGSMGGLMETLTGAAEDASGPSQKRKAAKAQLRSAPARRIITNKGKRSVAEKELAQLAAVLANESFKRDPFAAIQAHMKLT 147
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BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Match: B8BW59_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW59_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 3.650e-5
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 1 
Query:   37 PVSETSAAINSRGQRKR----------------ALKKASLVRKKGLVE---LARRGPRGNQ-VSTATKIADPLVPELTSHQDTLSNSTSNKGKRTLVAAELGQLNAVLATPSFQKDPFAAVQAHLRQTACPQA 375
            P +     + SRGQRKR                +L+ A+L  +KG ++     R    G   VST+TK +     + T++  + ++  +NK K+TL   E+  +  VL  PSFQ++PF A+Q HLR +  PQA
Sbjct:   37 PSATDGKEVLSRGQRKRLHKREQYLKREKMVLSSLRLAALEEQKGKIDGLDAIREALIGTSGVSTSTKTSKTSA-KSTAYAPSSNSCNTNKSKKTLANTEISHMGLVLEHPSFQQNPFVAIQQHLRNSLAPQA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8819.16348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8P4_ECTSI2.040e-3347.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIC9_9STRA1.170e-839.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8BW59_THAPS3.650e-532.33Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8819contigH-elongata_contig8819:4412..6244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1327
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8819.16348.1prot_H-elongata_contig8819.16348.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8819 5181..6244 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.463569-UTR-H-elongata_contig8819:4411..51801622931283.463569-UTR-H-elongata_contig8819:4411..5180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8819 4412..5180 -
1691679772.6101344-UTR-H-elongata_contig8819:4411..51801691679772.6101344-UTR-H-elongata_contig8819:4411..5180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8819 4412..5180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.4788268-CDS-H-elongata_contig8819:5180..53961622931283.4788268-CDS-H-elongata_contig8819:5180..5396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8819 5181..5396 -
1691679772.6205354-CDS-H-elongata_contig8819:5180..53961691679772.6205354-CDS-H-elongata_contig8819:5180..5396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8819 5181..5396 -
1622931283.494196-CDS-H-elongata_contig8819:5602..57621622931283.494196-CDS-H-elongata_contig8819:5602..5762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8819 5603..5762 -
1691679772.6306849-CDS-H-elongata_contig8819:5602..57621691679772.6306849-CDS-H-elongata_contig8819:5602..5762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8819 5603..5762 -
1622931283.509877-CDS-H-elongata_contig8819:6062..62441622931283.509877-CDS-H-elongata_contig8819:6062..6244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8819 6063..6244 -
1691679772.6403568-CDS-H-elongata_contig8819:6062..62441691679772.6403568-CDS-H-elongata_contig8819:6062..6244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8819 6063..6244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8819.16348.1

>prot_H-elongata_contig8819.16348.1 ID=prot_H-elongata_contig8819.16348.1|Name=mRNA_H-elongata_contig8819.16348.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MGRIDKKAKHRRPVSETSAAINSRGQRKRALKKASLVRKKGLVELARRGP
RGNQVSTATKIADPLVPELTSHQDTLSNSTSNKGKRTLVAAELGQLNAVL
ATPSFQKDPFAAVQAHLRQTACPQASLVDRPVQASKKGYKYLRATNSAGS
NEHPARITGLRTRVNERQRNAKPYKGRNAKMRVKR*
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mRNA from alignment at H-elongata_contig8819:4412..6244-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8819.16348.1 ID=mRNA_H-elongata_contig8819.16348.1|Name=mRNA_H-elongata_contig8819.16348.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1833bp|location=Sequence derived from alignment at H-elongata_contig8819:4412..6244- (Himanthalia elongata Himel1 dioecious)
ATGGGTCGGATCGACAAAAAAGCGAAGCACCGGAGACCCGTGTCTGAAAC
AAGTGCTGCGATTAATAGCCGCGGACAGCGCAAGCGAGCGCTGAAAAAAG
CCTCGCTCGTGAGGAAAAAAGGACTTGTCGAGCTTGCTCGGCGAGGGCCG
AGGGGTAATCAGGTAAGCACTGCAACAAAAATGTTGAACTGACATCCAAG
ATTGGTTCCCAGCTTTCCGCCGCTGCAGCCGACACCGCACTATGTCTCTA
TCCGCTGGAAATAAAATGCTGTCAGGGTTATTGTTTTAATGTCGCTAGAG
ATTTCAACGCTCTATGGCGATGTGTTCTTCTCAACTTTCAAAACGTTTGT
TTGTTGCTTTGCTTTTTGGCGTGGGCAGGCACCTAAAGAAAGTCCGATAG
CGGAGTGCCCCCCAAAGCTTCTCGGTAATATTTCAGTTGGCGGGGGTGGT
ACGTTATCTATTCGAGGTGTTCCCCGAGCGAGAGCAGACCCCCTCGTACC
GGAGCTAACGTCCCACCAAGATACTTTGAGCAACAGCACCAGCAACAAGG
GCAAAAGGACATTGGTCGCAGCTGAACTGGGACAACTCAACGCTGTTCTT
GCAACACCTTCTTTTCAAAAGGATCCGTTTGCAGCAGTGCAGGTGATGAA
TTTGATGGCTGCCTCACCAACAAGCGCCCACAAGCATGTCGTGGTGCTGA
CGTATAAAAATAACGATTTTTCTGGCCATGACAATCATCAAATAAGTGAC
TAGATCTCCGTGATAACACAAGCATTGTCTAGGGATATTGTTACTTCATC
TCCTGATTCCCGGCGCCTTAACTCGTGAACATTCGATGGATCTCGCAGGC
CCACCTCCGTCAAACAGCTTGCCCTCAAGCATCTTTGGTCGATCGTCCGG
TACAAGCCTCAAAGAAGGGTTACAAATATTTGAGAGCTACTAATAGTGCG
GGTAGTAACGAGCATCCTGCCCGGATAACAGGGTTGCGCACGCGAGTGAA
CGAACGGCAGAGAAACGCCAAACCCTACAAGGGGAGAAACGCCAAAATGA
GGGTGAAGAGATGATACAGGTCCCCAACATGTAAATGAGGAAACCGTTCC
TTGAGCTGAACTCGACTTGTTGTACGCTACGCAACCTGACTTGTGTTCTG
CGTTTACAAGGTTAGCTGTTGTTTTGATTAATATTCCTGTGACTATCGAG
ATCCAGGTGGCTTAATTGTTGGTTGAACGCTTCCCGCCTGATCTAACTAT
ATATTTAGTTGTATCATGCGAGTCTGTTGGATGTCAAGTGGCTGGTTCGG
AATGAACCCGGTTTCATGATCCAGTGTCATGACTCTTAATGGACTGTTGG
AGGGGTCTCGATAGGAAGAGGTCGATGGGAGTACATTTTTCCCCCGATGA
TTACAGGCTTAGACTACCGTCATTCTAAGGAAACAAGAGCGACAAAAAAA
CGGGTAACCAGCAATCAGCGCCTCGTGACAGCTCTGAGTTATTGGTACTT
TTGAGTCTGCGGGTGGCTCGAATTTAACGAAAACAATAATTTTCCGTGTA
TGGATTTTATTGCATCTGATGGGCGCGCCAGTAGAAAGGACAAAGGGGTG
ACCACTCCTGGGGCTTTATGCCTCAAAACACTGGCGTTGCACGATAAAGA
AAAACAAACGGTCCAAATACTGGGAGGTTTTATTTGTGGCCGGGGAGACG
GGAATAGGACACCAACCCTACCCTACCAGGGTCCCAAACACTCGACTAAT
ACTATTACTACACAAGCCTGCTGCTGCCACGCGGGAGCGTTGACCTCAAG
CCTGCACGGAGAAAACATCTAAATGTTTCAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig8819:4412..6244-

>mRNA_H-elongata_contig8819.16348.1 ID=mRNA_H-elongata_contig8819.16348.1|Name=mRNA_H-elongata_contig8819.16348.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig8819:4412..6244- (Himanthalia elongata Himel1 dioecious)
ATGGGTCGGATCGACAAAAAAGCGAAGCACCGGAGACCCGTGTCTGAAAC
AAGTGCTGCGATTAATAGCCGCGGACAGCGCAAGCGAGCGCTGAAAAAAG
CCTCGCTCGTGAGGAAAAAAGGACTTGTCGAGCTTGCTCGGCGAGGGCCG
AGGGGTAATCAGGTAAGCACTGCAACAAAAATATGGGTCGGATCGACAAA
AAAGCGAAGCACCGGAGACCCGTGTCTGAAACAAGTGCTGCGATTAATAG
CCGCGGACAGCGCAAGCGAGCGCTGAAAAAAGCCTCGCTCGTGAGGAAAA
AAGGACTTGTCGAGCTTGCTCGGCGAGGGCCGAGGGGTAATCAGGTAAGC
ACTGCAACAAAAATAGCAGACCCCCTCGTACCGGAGCTAACGTCCCACCA
AGATACTTTGAGCAACAGCACCAGCAACAAGGGCAAAAGGACATTGGTCG
CAGCTGAACTGGGACAACTCAACGCTGTTCTTGCAACACCTTCTTTTCAA
AAGGATCCGTTTGCAGCAGTGCAGAGCAGACCCCCTCGTACCGGAGCTAA
CGTCCCACCAAGATACTTTGAGCAACAGCACCAGCAACAAGGGCAAAAGG
ACATTGGTCGCAGCTGAACTGGGACAACTCAACGCTGTTCTTGCAACACC
TTCTTTTCAAAAGGATCCGTTTGCAGCAGTGCAGGCCCACCTCCGTCAAA
CAGCTTGCCCTCAAGCATCTTTGGTCGATCGTCCGGTACAAGCCTCAAAG
AAGGGTTACAAATATTTGAGAGCTACTAATAGTGCGGGTAGTAACGAGCA
TCCTGCCCGGATAACAGGGTTGCGCACGCGAGTGAACGAACGGCAGAGAA
ACGCCAAACCCTACAAGGGGAGAAACGCCAAAATGAGGGTGAAGAGATGA
GCCCACCTCCGTCAAACAGCTTGCCCTCAAGCATCTTTGGTCGATCGTCC
GGTACAAGCCTCAAAGAAGGGTTACAAATATTTGAGAGCTACTAATAGTG
CGGGTAGTAACGAGCATCCTGCCCGGATAACAGGGTTGCGCACGCGAGTG
AACGAACGGCAGAGAAACGCCAAACCCTACAAGGGGAGAAACGCCAAAAT
GAGGGTGAAGAGATGA
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