mRNA_H-elongata_contig88177.16346.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.970e-24 Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
+ R +L+ GTFNV T A +G N +GH + ++++ C+A CDVIGLQET+R+G I Y + + G +G K K+G +GVG+AIK I G++ ECI+ RL+ R+ I VTFVV YAPTE
Sbjct: 3 KAREGDLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 133
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.040e-23 Identity = 62/146 (42.47%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAP-TEEATEGQKVKYIEAL 489
+ R D+++ GTFNVRT A +G N +GH + ++++ C+ CDVIGLQET+R+G I Y V + G +G K K+G +GVG+AIK + + AG++ ECI+ RL+ R+ I VTFVV YAP T T G V ++L
Sbjct: 117 KAREDDVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSL 262
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 103 bits (257), Expect = 2.580e-23 Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
+ R +L+ GTFNVRT A +G N +GH + ++++ C+A CDVIGLQET+R+G I Y + + G +G K K+G +GVG+AIK + G++ ECI RL+ R+ I +TFVV YAPTE
Sbjct: 142 KAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTE 272
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 102 bits (253), Expect = 4.400e-22 Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
+ R +L+ GTFNV T A +G N +GH + ++++ C+A CDVIGLQET+R+G I Y + + G +G K K+G +GVG+AIK + G++ ECI+ RL+ R+ I VTFVV YAPTE
Sbjct: 651 KAREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTE 781
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 101 bits (252), Expect = 5.860e-22 Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
+ R +L+ G FNVRT A +G +GH + ++++ C+A CDVIGLQET+R+G I Y + + G +G K K+G +GVG+AIK + G++ ECI+ RL+ R+ I VTFVV YAPTE
Sbjct: 53 KAREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 183
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 3.900e-21 Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 1
Query: 76 ELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE--EATEGQKV 471
+L+ GTFNVRT A +G N +GH + ++++ C+A CDVIGLQET+R+G I Y + + G +G K K+G +GVG+AIK + G++ EC + RL+ R+ I VTFVV YA TE T G+ V
Sbjct: 819 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDV 954
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 5.320e-21 Identity = 61/153 (39.87%), Postives = 90/153 (58.82%), Query Frame = 1
Query: 16 EMRKATRMKHRTTRA-------RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
+ R+A R +H T A + R +L+ GTFNVRT A +G N +GH + ++++ +A CDVIGLQET+R+G I Y + + G +G K K+G +GVG+AIK + G++ ECI+ RL+ R+ I + V VV YAPTE
Sbjct: 105 QQREADRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTE 257
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 5.960e-21 Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
+ R +L+ GTFN+RT + N +GH + ++++ C+A CDV+GLQE +RDG I Y + + G +G K K+G +GVG+AIK + G++ ECI+ RL+ R+ I VTFVV YAPTE
Sbjct: 19 KAREGDLSFGTFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 149
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 2.400e-20 Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISIKYNF-VTFVVAYAPTE 447
+ R +L+ GTF+VRT +G N +GH + +++ +A CDVIGLQET+R+G I Y + + G +G K K+G GVG+AIK + G++ ECI+ RL+ R+ I VTFVV YAPTE
Sbjct: 149 KAREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTE 279
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Match: A0A6H5KI90_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI90_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 7.220e-18 Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 61 RCRLDELTVGTFNVRTEAVNGVNDMGH-IDSLLRPCAARVCDVIGLQETKRDGASEITASEYRVYFCGDYSGVKGKKGHYGVGLAIKGEIVNKAGKDDIAFECINARLLNARISI 402
+ R +L+ G FNVRT A +G N +GH + ++++ C+A CDVIGLQET+R+G I Y + + G +G K K+G +GVG+AIK + G++ ECI+ +L+ R+ +
Sbjct: 82 KAREGDLSFGKFNVRTPAYSGRNPIGHKVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPKLMKVRLQV 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88177.16346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88177.16346.1 >prot_H-elongata_contig88177.16346.1 ID=prot_H-elongata_contig88177.16346.1|Name=mRNA_H-elongata_contig88177.16346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp MRKATRMKHRTTRARCRLDELTVGTFNVRTEAVNGVNDMGHIDSLLRPCAback to top mRNA from alignment at H-elongata_contig88177:1623..2114- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88177.16346.1 ID=mRNA_H-elongata_contig88177.16346.1|Name=mRNA_H-elongata_contig88177.16346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at H-elongata_contig88177:1623..2114- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88177:1623..2114- >mRNA_H-elongata_contig88177.16346.1 ID=mRNA_H-elongata_contig88177.16346.1|Name=mRNA_H-elongata_contig88177.16346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig88177:1623..2114- (Himanthalia elongata Himel1 dioecious)back to top |