mRNA_H-elongata_contig88174.16345.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: D7FYH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYH6_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.100e-30 Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 64 LHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPRLP 273
+HG+VFGEGRKVRLRLLD+EAC GAL+G AMEI+DC+S+LVTEV+ T+DPE AF GADVA+LLGGFPRLP
Sbjct: 1 MHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDLVTEVVATSDPEVAFKGADVAVLLGGFPRLP 70
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: W2NFM1_PHYPR (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2NFM1_PHYPR) HSP 1 Score: 107 bits (266), Expect = 7.620e-26 Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPR 267
+ ++G AGQIAYSLLPLI G +FG ++V LRLLD+E ALEG+ ME++DC NLV +I T D ETAF ADVAIL+GGFPR
Sbjct: 6 IVVSGAAGQIAYSLLPLICIGHIFGPNQRVELRLLDIEPAQEALEGVKMELQDCAFNLVDAIIPTADLETAFKDADVAILVGGFPR 91
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: A0A8K1FKE5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKE5_PYTOL) HSP 1 Score: 106 bits (265), Expect = 1.240e-25 Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPR 267
V ++G AGQIAYSLLPLI +G VFG R+V LRLLD+ ALEG+ ME++DC NLV VI T+D E AF ADVAIL+GGFPR
Sbjct: 6 VVVSGAAGQIAYSLLPLICNGLVFGAERRVELRLLDIPMAAEALEGVKMELQDCAYNLVDAVIPTSDLEVAFKDADVAILVGGFPR 91
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: A0A0P1ASB9_PLAHL (Malate cytoplasmic-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ASB9_PLAHL) HSP 1 Score: 103 bits (256), Expect = 7.730e-25 Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPR 267
+ ++G AGQIAYSLLPLI GQVFG ++V LRLLD+ + ALEG+ ME++DC NLV +I T+D E AF +VAIL+GGFPR
Sbjct: 6 IVVSGAAGQIAYSLLPLICIGQVFGPNQRVELRLLDIPSAQNALEGVKMELQDCAFNLVDAIIPTSDLEVAFNDVNVAILVGGFPR 91
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: K3WQW7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQW7_GLOUD) HSP 1 Score: 103 bits (256), Expect = 2.390e-24 Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 1 SVCVAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPR 267
S+ + ++G AGQIAYSLLPLI G VFG R+V LRLLD+ ALEG+ ME++DC NLV E+ T+D E AF DVAIL+GGFPR
Sbjct: 4 SLKIVVSGAAGQIAYSLLPLICIGHVFGPTRRVSLRLLDIPVAQEALEGVKMELQDCAFNLVDEITPTSDLELAFKDVDVAILVGGFPR 92
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: A0A8J5MC48_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5MC48_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.580e-24 Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPR 267
+ ++G AGQIAYSLLPLI G +FG ++V LRLLD+E ALEG+ ME++DC NLV ++ T D ETAF DVAIL+GGFPR
Sbjct: 246 IVVSGAAGQIAYSLLPLICIGHIFGPNQRVELRLLDIEPAQEALEGVKMELQDCAFNLVDAIVPTADLETAFKDVDVAILVGGFPR 331
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: A0A097IUP6_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUP6_SACJA) HSP 1 Score: 103 bits (257), Expect = 3.660e-24 Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDC-HSNLVTEVITTTDPETAFAGADVAILLGGFPRLP 273
V +TGGAGQIAYSL+PLI G VFG G +V LRLLD+ ALEG+AME++D S ++ V+ TTD AF GA VAILLGGFPR P
Sbjct: 6 VVVTGGAGQIAYSLVPLIARGLVFGPGVRVHLRLLDIPPAANALEGVAMEVQDSLFSTVLDGVLATTDEAQAFDGAQVAILLGGFPRRP 94
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: A0A097IUM0_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM0_9PHAE) HSP 1 Score: 103 bits (257), Expect = 4.290e-24 Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDC-HSNLVTEVITTTDPETAFAGADVAILLGGFPRLP 273
V +TGGAGQIAYSL+PLI G VFG G +V LRLLD+ ALEG+AME++D +S ++ ++ TTD AF GA VAILLGGFPR P
Sbjct: 6 VVVTGGAGQIAYSLIPLIARGVVFGPGTRVNLRLLDIPPSAKALEGVAMEVQDSLYSTVLDGLLATTDEARAFDGAQVAILLGGFPRRP 94
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: A0A832Y5Q9_9ARCH (Malate dehydrogenase n=7 Tax=Archaea TaxID=2157 RepID=A0A832Y5Q9_9ARCH) HSP 1 Score: 102 bits (253), Expect = 5.100e-24 Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPRLP 273
VA+TG AGQI YSLLP I G++FG RK+RL+LL++ AL G+AME++DC L+ EV+TTTDP+TAF+GA+ +L+G PR P
Sbjct: 7 VAVTGAAGQIGYSLLPRIAAGEMFGPDRKIRLQLLEIPPALDALRGVAMELQDCAFPLLEEVVTTTDPDTAFSGANWCLLVGSKPRGP 94
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Match: A0A418F0B1_9STRA (Ldh_1_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F0B1_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 5.310e-24 Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 10 VAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIAMEIRDCHSNLVTEVITTTDPETAFAGADVAILLGGFPR 267
V ++G AGQ+AY+ LPL+ G+V G +++ LRLLD+ L G+ ME+ DC +LV +++ TTD ETAF AD+AILLGGFPR
Sbjct: 11 VVVSGAAGQVAYAFLPLLCSGRVLGPNQRIHLRLLDIPQSLEVLGGVVMELNDCAFHLVDDIVPTTDLETAFENADIAILLGGFPR 96 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88174.16345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88174.16345.1 >prot_H-elongata_contig88174.16345.1 ID=prot_H-elongata_contig88174.16345.1|Name=mRNA_H-elongata_contig88174.16345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp SVCVAITGGAGQIAYSLLPLILHGQVFGEGRKVRLRLLDVEACGGALEGIback to top mRNA from alignment at H-elongata_contig88174:1826..2518+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88174.16345.1 ID=mRNA_H-elongata_contig88174.16345.1|Name=mRNA_H-elongata_contig88174.16345.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=693bp|location=Sequence derived from alignment at H-elongata_contig88174:1826..2518+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88174:1826..2518+ >mRNA_H-elongata_contig88174.16345.1 ID=mRNA_H-elongata_contig88174.16345.1|Name=mRNA_H-elongata_contig88174.16345.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig88174:1826..2518+ (Himanthalia elongata Himel1 dioecious)back to top |