mRNA_H-elongata_contig121299.1634.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121299.1634.1
Unique NamemRNA_H-elongata_contig121299.1634.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 1.380e-109
Identity = 156/219 (71.23%), Postives = 183/219 (83.56%), Query Frame = 1
Query:    1 VKPYERIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAHGLVFITEGKR-FNRVLDEAA 654
            V    R+ +HPAL VPHLS+ H+G LDF  L+  GCKGVIFDKDNTLT PY+D++HPLVEEG+++C+EVF  +VC+MSNSAGTRDDP YADA+RIET LGIPVLRHDEKKPGG+ DVLAFF+GK PEG  +RLDELCFVGDRL+TDVVFGN+HGMLTVHT PLTL+GDNRPA +FR+LERKV F+ FFH+TCSVEP+AH L    EG R  +R  D AA
Sbjct:   83 VSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV-FMGFFHQTCSVEPQAHRLC--PEGARVLDREGDTAA 298          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 3.040e-108
Identity = 153/215 (71.16%), Postives = 179/215 (83.26%), Query Frame = 1
Query:    1 VKPYERIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAHGLVFITEGKRFNRVLD 645
            V    R+ +HPAL VPHLS+ ++G LDF  L+  GCKGVIFDKDNTLT PY+D++HPLVEEG+++C+EVF  +VC+MSNSAGTRDDP Y  A+RIET LGIPVLRHDEKKPGG+ DVLAFFKGK PEG  +RLDELCFVGDRL+TDVVFGN+HGMLTVHT PLTL+GDNRPA +FR+LERKV F+ FFH+TCSVEP+AH L    EG R   VLD
Sbjct:   10 VSSMTRVVRHPALAVPHLSLANIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYVHAIRIETALGIPVLRHDEKKPGGIADVLAFFKGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKV-FMGFFHQTCSVEPQAHRLC--PEGAR---VLD 218          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.100e-71
Identity = 109/202 (53.96%), Postives = 148/202 (73.27%), Query Frame = 1
Query:    1 VKPYERIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGK-GPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAHGL 603
            V+    + +HP+L VPHL++ ++  LDF+AL+  G +G+IFDKDNTLT PY + LHP + +G R+C   FG +VC+MSNSAGT DD  +  A++IET LGIPVLRH EKKPGG+ +VLAFF+ +   EG + R  +LC +GDRL+TDVVFGN+HGMLTVHT PLTL+GDN+ A++ R++E ++ F +  H   SVE   H L
Sbjct:   14 VRTLGSVIRHPSLAVPHLALTNIAQLDFAALKAMGIRGIIFDKDNTLTAPYVEELHPAISDGFRRCQSHFGGSVCIMSNSAGTGDDVNFESAIKIETGLGIPVLRHREKKPGGLPEVLAFFRERCADEGIEAR--DLCVIGDRLLTDVVFGNLHGMLTVHTKPLTLQGDNKVALVARYIESRI-FFNIVHARFSVEAPQHRL 212          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL)

HSP 1 Score: 219 bits (559), Expect = 3.070e-67
Identity = 108/194 (55.67%), Postives = 135/194 (69.59%), Query Frame = 1
Query:   16 RIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLERKVVFLDFFHKTCSVEPRAH 597
            R+   P+L +PH++V H+G LDF ALR+AGCKG++FDKDNTLT PY + +HPLV EG+ +CL  F   VC++SNSAGT DD GY  A +IE  LG+PV+RH EKKP G+ DVL FF  +  E   +R  EL  VGDRL+TDVVFGN++GMLTVHT PLTL GDN+ A + R LE  V    F      V+P  H
Sbjct:   49 RVAAQPSLAIPHVTVTHIGCLDFHALREAGCKGIVFDKDNTLTAPYVEEVHPLVREGLDRCLREFQGRVCILSNSAGTDDDEGYEAARKIEAGLGLPVIRHKEKKPAGLQDVLDFFHHQSGEA--VRPTELVMVGDRLLTDVVFGNLYGMLTVHTRPLTLEGDNKVARVIRPLETAV----FLRLRGVVKPPVH 236          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: W7U306_9STRA (Haloacid dehalogenase superfamily protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U306_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.670e-52
Identity = 93/175 (53.14%), Postives = 120/175 (68.57%), Query Frame = 1
Query:   16 RIFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFG-NAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVIFRFLE 537
            ++ ++P+L +PH+SV H+G LDF  LR AG KGVIFDKDNT+T PY D +H  V         VFG   + ++SNSAGT DD G+A A+RIE+ LG+PVLRH  KKPG + +VL  FK +   G D   ++LC +GDRL+TDV++GN  GMLTVHT  LT  GDN+ A I R LE
Sbjct:   93 QVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHFKKEC--GPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLE 265          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A8J9RZH6_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZH6_PHATR)

HSP 1 Score: 180 bits (456), Expect = 1.710e-52
Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   19 IFQHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFG-NAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRG----DNRPAVIFRFLERKVV 549
            + + P L VP LSV  V  ++F+AL+D G   V+FDKDNTLT PY++ +HPL  +G+ + L VFG + V ++SNSAGT+DD  Y DA+RIE VLGI V+RH+EKKPGG+ +VLA F    P         LC VGDRL+TD+VFGN+HGMLTVH  PL        DN  A + R +E K +
Sbjct:   16 VLRRPGLMVPQLSVATVSQMNFTALKDHGIAAVMFDKDNTLTSPYENEIHPLAAQGIDEALRVFGRDRVAILSNSAGTKDDVDYTDAIRIENVLGIQVIRHEEKKPGGLDEVLAHFDLTDPA-------TLCMVGDRLLTDIVFGNLHGMLTVHCLPLCSGSENSKDNWTAKLLRPMENKAL 190          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.410e-52
Identity = 93/188 (49.47%), Postives = 127/188 (67.55%), Query Frame = 1
Query:   19 IFQHPALTVPHLSVDHVGMLDFSALRD-AGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFG-NAVCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTL----RGDNRPAVIFRFLERKVVFLDFF 564
            + +HP L VPH+SV +V  L++ A+++ AG + ++FDKDNTLT PY  ++H    +G+++  E+FG   V +MSNSAGT+DDPGY DA  IE  LGI V+RHDEKKPGG+ +VL  F    P         LC VGDRL+TDVVFGN+H MLT+HT PL      R DN P+ I R++E K ++ ++F
Sbjct:   16 VLRHPTLIVPHVSVANVSELNYRAMKECAGIRAILFDKDNTLTAPYDMTVHRDAAKGLKRAKEIFGAENVAIMSNSAGTKDDPGYEDAKMIEEALGIAVIRHDEKKPGGLDEVLKHFDVDDPA-------TLCMVGDRLLTDVVFGNLHSMLTIHTLPLCKGAENRQDNTPSKIIRYIENKGLYGNWF 196          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A7S1D5Y6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5Y6_CYCTE)

HSP 1 Score: 173 bits (438), Expect = 2.140e-49
Identity = 86/181 (47.51%), Postives = 119/181 (65.75%), Query Frame = 1
Query:   25 QHPALTVPHLSVDHVGMLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNA-VCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRP----AVIFRFLERKVVF 552
            + P L VPH+SV  V  +D+ AL+      V+FDKDNTLT PY+++LHP    G+   L+VFG+A V ++SNSAGT DDP Y DA+ IE  L I V+RH EKKPGG+ ++L  F     +  +     +C VGDRL+TDVVFGN+HGMLT+HT PL +  +NR     A + R +E ++++
Sbjct:    2 RRPGLMVPHVSVSSVSDIDYVALKKQKIDAVVFDKDNTLTAPYENTLHPKATRGIESALQVFGDANVAILSNSAGTNDDPDYRDALAIEEALQIKVIRHKEKKPGGLKEMLHHFSMLEKDDDNDDPSRICVVGDRLLTDVVFGNLHGMLTIHTLPLCVGAENRKDNVVAKLIRRMENRLLY 182          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A7S2PRD8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRD8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.340e-49
Identity = 91/188 (48.40%), Postives = 128/188 (68.09%), Query Frame = 1
Query:   19 IFQHPALTVPHLSVDHVGMLDFSALRD-AGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNA-VCVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTL----RGDNRPAVIFRFLERKVVFLDFF 564
            + + P L  PHL+V  V  ++++ALRD AG + VIFDKDNTL+ PY+  +HP  ++G++  +EVFG + V V+SNSAGT+DDPGY DA +IE  +GI V+RHDEKKPGG+ +V+  F     +  D    +LC VGDRL+TD+VFGN+HGMLTVH  PL      + DN+ A   R  E  V++ +++
Sbjct:   33 VMRRPYLASPHLAVGTVSEVNYTALRDEAGIRAVIFDKDNTLSAPYETVVHPKADQGLKNAMEVFGPSNVAVLSNSAGTKDDPGYEDAKKIEEAMGIAVIRHDEKKPGGLKEVMDHF-----DDVD-DASQLCMVGDRLLTDIVFGNLHGMLTVHCLPLCSGEENKKDNKIASSIRTTENLVLYTNWW 214          
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Match: A0A1Z5JVZ9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVZ9_FISSO)

HSP 1 Score: 173 bits (438), Expect = 2.980e-49
Identity = 99/200 (49.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query:   19 IFQHPALTVPHLSVDHVGMLDFSAL-RDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNA-VCVMSNSAGT-RDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGKGPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNR----PAVIFRFLERKVVFLDFFHKTCSVEPRAH 597
            + + PAL VPHLSV  V  +++ AL R AG + VIFDKDNTLT PY   +HP   +G+++ L+VFG   V ++SNSAGT +DDP + DA++IE  LGI V+RH EKKPGG+ +VL  F    P        +LC VGDRL+TD+VFGNIHGMLTVHT PL    DN      A I R  E KV++   F K        H
Sbjct:   16 VARRPALLVPHLSVPTVSQINYDALKRCAGIEAVIFDKDNTLTAPYGSCVHPDASDGLQRVLDVFGKERVAILSNSAGTVQDDPDFRDALQIEEALGISVIRHKEKKPGGLEEVLQHFAMTDPA-------KLCMVGDRLLTDIVFGNIHGMLTVHTLPLCKGRDNARDNWTAKILRPAENKVLYGRLFGKALRRRKPGH 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121299.1634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC82_ECTSI1.380e-10971.23Haloacid dehalogenase (HAD) superfamily protein n=... [more]
A0A6H5K9X3_9PHAE3.040e-10871.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z207_9STRA2.100e-7153.96Mitochondrial PGP phosphatase-domain-containing pr... [more]
A0A7S1ISK9_9EUGL3.070e-6755.67Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
W7U306_9STRA1.670e-5253.14Haloacid dehalogenase superfamily protein n=1 Tax=... [more]
A0A8J9RZH6_PHATR1.710e-5251.10Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A448ZEQ0_9STRA3.410e-5249.47Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S1D5Y6_CYCTE2.140e-4947.51Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2PRD8_9STRA2.340e-4948.40Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JVZ9_FISSO2.980e-4949.50Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121299contigH-elongata_contig121299:140..1983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.8
Seed ortholog evalue4.8e-79
Seed eggNOG ortholog2880.D8LC82
Preferred nameGEP4
KEGG rclassRC00017
KEGG koko:K01094
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0031974,GO:0032048,GO:0032049,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046838,GO:0061024,GO:0070013,GO:0071704,GO:0071840,GO:0090407,GO:1901576
EggNOG free text desc.phosphatase
EggNOG OGsCOG1011@1,KOG2961@2759
EC3.1.3.27
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhaloacid dehalogenase (HAD) superfamily protein
Ec32 orthologEc-20_004780.1
Exons5
Model size957
Cds size612
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.768419-UTR-H-elongata_contig121299:139..2111622929713.768419-UTR-H-elongata_contig121299:139..211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121299 140..211 +
1691679129.0331616-UTR-H-elongata_contig121299:139..2111691679129.0331616-UTR-H-elongata_contig121299:139..211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121299 140..211 +
1622929713.8305652-UTR-H-elongata_contig121299:1710..19831622929713.8305652-UTR-H-elongata_contig121299:1710..1983Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121299 1711..1983 +
1691679129.124834-UTR-H-elongata_contig121299:1710..19831691679129.124834-UTR-H-elongata_contig121299:1710..1983Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig121299 1711..1983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.7787614-CDS-H-elongata_contig121299:211..2681622929713.7787614-CDS-H-elongata_contig121299:211..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 212..268 +
1691679129.0452485-CDS-H-elongata_contig121299:211..2681691679129.0452485-CDS-H-elongata_contig121299:211..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 212..268 +
1622929713.7883363-CDS-H-elongata_contig121299:430..5521622929713.7883363-CDS-H-elongata_contig121299:430..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 431..552 +
1691679129.0610507-CDS-H-elongata_contig121299:430..5521691679129.0610507-CDS-H-elongata_contig121299:430..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 431..552 +
1622929713.8017695-CDS-H-elongata_contig121299:748..8871622929713.8017695-CDS-H-elongata_contig121299:748..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 749..887 +
1691679129.0776775-CDS-H-elongata_contig121299:748..8871691679129.0776775-CDS-H-elongata_contig121299:748..887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 749..887 +
1622929713.811463-CDS-H-elongata_contig121299:1126..12821622929713.811463-CDS-H-elongata_contig121299:1126..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 1127..1282 +
1691679129.0918067-CDS-H-elongata_contig121299:1126..12821691679129.0918067-CDS-H-elongata_contig121299:1126..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 1127..1282 +
1622929713.8210483-CDS-H-elongata_contig121299:1572..17101622929713.8210483-CDS-H-elongata_contig121299:1572..1710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 1573..1710 +
1691679129.1107078-CDS-H-elongata_contig121299:1572..17101691679129.1107078-CDS-H-elongata_contig121299:1572..1710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121299 1573..1710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121299.1634.1prot_H-elongata_contig121299.1634.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121299 212..1710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121299.1634.1

>prot_H-elongata_contig121299.1634.1 ID=prot_H-elongata_contig121299.1634.1|Name=mRNA_H-elongata_contig121299.1634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MLDFSALRDAGCKGVIFDKDNTLTPPYKDSLHPLVEEGVRQCLEVFGNAV
CVMSNSAGTRDDPGYADAVRIETVLGIPVLRHDEKKPGGVVDVLAFFKGK
GPEGADIRLDELCFVGDRLMTDVVFGNIHGMLTVHTNPLTLRGDNRPAVI
FRFLERKVVFLDFFHKTCSVEPRAHGLVFITEGKRFNRVLDEAATGGSST
HKA*
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mRNA from alignment at H-elongata_contig121299:140..1983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121299.1634.1 ID=mRNA_H-elongata_contig121299.1634.1|Name=mRNA_H-elongata_contig121299.1634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1844bp|location=Sequence derived from alignment at H-elongata_contig121299:140..1983+ (Himanthalia elongata Himel1 dioecious)
GTCAAACCGTACGAAAGGATTTTCCAACATCCTGCTCTGACAGTGCCGCA TCTGTCCGTGGATCACGTCGGTATGTTGGACTTCTCGGCTCTGCGCGACG CTGGCTGCAAGGGGGTGATCTTCGACAAGGTAATGAACAGCGGGTAAGGA AGCTGACTCTCGTTTTTGCTACCGCTTCGGCGAGCTTGCACGTGAGGCTT GAAGGAAAACTCATCATCATCCCTTCTCCTCCGTTACATTCACCGATGAA TGGCGTTGAATGCCTGCGACGGGCGTGTAACGACTGATCAGGATAACACC TTGACCCCGCCGTACAAGGACAGCTTACACCCTCTCGTGGAGGAAGGCGT TCGACAGTGCTTGGAGGTGTTTGGGAACGCCGTGTGCGTCATGTCCAACT CCGCGGGCACCCGGTGTGTGTGGCGTGCGGCTTTGTTATCATTGGTCCAC GCGCTCGGAGTTCATAAATTATGACCACGTTTTACGGTCGGATATGCTAC ATCTCTCTGCTAACTCCGTCCGGCTTAGGGACGCCTTCGACCCTCGACCG GTGCACTTTCGTCCCGGAGGACGCTAGATATGTCTAATCCTCGACGTGGT ATTTCCCAGGGATGACCCAGGATACGCGGACGCCGTTCGCATCGAGACCG TGCTCGGCATTCCCGTGCTGAGACACGACGAAAAAAAGCCAGGAGGGGTA GTGGACGTGCTGGCGTTTTTCAAGGGGAAGGGACCGGAGGGTGCAGACGT GAGGAGTCCCTTTGTCGTAACGCCTTTTCGTGACGTAGAGCAGGCGTGCT AAACAAACAGCAGTAGGAGCGGGATATGACCCAAGCTATCTGACCCGCCG AATACTCATGAAGGATTGATTATGGAATCGCACGGGCGTGTTCGTCCGCA GCTGAAGTCTGACCCCAGGAGAAGACCAACCGTAGAGCTTTTCTCCAATA ATCACGTGTCGTTACGCTCCTTGCTTGTTTTCTTCAGATTCGGTTAGACG AGCTATGCTTTGTGGGCGACCGGTTGATGACAGACGTGGTGTTCGGGAAT ATTCATGGGATGCTTACCGTGCACACCAATCCTCTGACACTGCGGGGGGA CAATCGTCCGGCAGTCATCTTCCGCTTTTTGGAGAGAAAGGTAGTGGTTA CATGAACAAAGGGGTCGACGTTCCATTTCTTGAAAGAACGTCCTGGAGGG TTCCTGTCACTTACCCCTTGCGGTGCTTGGTTGGCCAGGCAGATCGCATA GCAGGAGTACTTGGTTATGTAAGAGTGCTCGTGAGTTGTCCAGCGTAAGC TTCCCCGCTATTCCATCATGAACAGTTTGTATGTCCGTGATGCTAGCCAG CGTGTAACGGCGGCGATGACTGACGTCACATCTTCACATAAACATTTCGG CTCTTGGCCCTGCGCAAACTCATGACCCACCAGGTGTTCCTGGACTTTTT CCACAAGACGTGCTCTGTAGAGCCGCGAGCGCATGGGTTGGTTTTCATTA CCGAGGGAAAACGTTTTAATCGTGTGTTAGACGAGGCCGCCACTGGAGGG TCTTCGACTCACAAGGCCTAAGGTTTTGTGTGACTTTGGATGTATATCGA GGTACCCCAGCCACCTCCGCTCAGGATTGGTGGGATACCCCATAAAAAAG CAAGAATGTGACACTACGTTTGATATTCAGTCATAATTGTGGCCTCATGA GGGTCGCCCAGCTTTTCCGTGCGTATAGTTCACTCTAAAATATCCCATGT GCTCGAAGAACCGTAAAGAACTGTTGGGTTTTCTCAGCAGCGGGTGAATT TTCCTGCGAAGGTCGTGCCTGAAACTATGAACTACGGAAGAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig121299:140..1983+

>mRNA_H-elongata_contig121299.1634.1 ID=mRNA_H-elongata_contig121299.1634.1|Name=mRNA_H-elongata_contig121299.1634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig121299:140..1983+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGACTTCTCGGCTCTGCGCGACGCTGGCTGCAAGGGGGTGATCTT
CGACAAGATGTTGGACTTCTCGGCTCTGCGCGACGCTGGCTGCAAGGGGG
TGATCTTCGACAAGGATAACACCTTGACCCCGCCGTACAAGGACAGCTTA
CACCCTCTCGTGGAGGAAGGCGTTCGACAGTGCTTGGAGGTGTTTGGGAA
CGCCGTGTGCGTCATGTCCAACTCCGCGGGCACCCGGATAACACCTTGAC
CCCGCCGTACAAGGACAGCTTACACCCTCTCGTGGAGGAAGGCGTTCGAC
AGTGCTTGGAGGTGTTTGGGAACGCCGTGTGCGTCATGTCCAACTCCGCG
GGCACCCGGGATGACCCAGGATACGCGGACGCCGTTCGCATCGAGACCGT
GCTCGGCATTCCCGTGCTGAGACACGACGAAAAAAAGCCAGGAGGGGTAG
TGGACGTGCTGGCGTTTTTCAAGGGGAAGGGACCGGAGGGTGCAGACGGA
TGACCCAGGATACGCGGACGCCGTTCGCATCGAGACCGTGCTCGGCATTC
CCGTGCTGAGACACGACGAAAAAAAGCCAGGAGGGGTAGTGGACGTGCTG
GCGTTTTTCAAGGGGAAGGGACCGGAGGGTGCAGACATTCGGTTAGACGA
GCTATGCTTTGTGGGCGACCGGTTGATGACAGACGTGGTGTTCGGGAATA
TTCATGGGATGCTTACCGTGCACACCAATCCTCTGACACTGCGGGGGGAC
AATCGTCCGGCAGTCATCTTCCGCTTTTTGGAGAGAAAGGTAATTCGGTT
AGACGAGCTATGCTTTGTGGGCGACCGGTTGATGACAGACGTGGTGTTCG
GGAATATTCATGGGATGCTTACCGTGCACACCAATCCTCTGACACTGCGG
GGGGACAATCGTCCGGCAGTCATCTTCCGCTTTTTGGAGAGAAAGGTAGT
GTTCCTGGACTTTTTCCACAAGACGTGCTCTGTAGAGCCGCGAGCGCATG
GGTTGGTTTTCATTACCGAGGGAAAACGTTTTAATCGTGTGTTAGACGAG
GCCGCCACTGGAGGGTCTTCGACTCACAAGGCCTAAGTGTTCCTGGACTT
TTTCCACAAGACGTGCTCTGTAGAGCCGCGAGCGCATGGGTTGGTTTTCA
TTACCGAGGGAAAACGTTTTAATCGTGTGTTAGACGAGGCCGCCACTGGA
GGGTCTTCGACTCACAAGGCCTAA
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