mRNA_H-elongata_contig88136.16338.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: D8LR42_ECTSI (Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR42_ECTSI) HSP 1 Score: 258 bits (658), Expect = 1.150e-82 Identity = 127/158 (80.38%), Postives = 135/158 (85.44%), Query Frame = 1
Query: 73 GEVRPPEVFEIRPWNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKT 546
G V P+ E R WN RR GALAMKVGSMAIFDSW VRHPVTVLQLDEC+VVQVKT TDGYT+LQLGVGERK KNVNK ERFR+AGVNPKRK+MEFRV+ +ALLPVGF+LRAQHFV GQKVDVCG SKGKGFQGGMKRWGF GQ ASHGVSKT
Sbjct: 98 GGVGGPQSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKT 255
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A7S2CDJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CDJ5_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.100e-53 Identity = 90/140 (64.29%), Postives = 104/140 (74.29%), Query Frame = 1
Query: 130 RCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKTH 549
R GAL +K G +A FD W RH +TV+QLD C VVQVK EAT+GYTALQLG+ + K KNV K + +AGV PKRK+ EFRV D +LPVG ++ A HFVPGQ VDVCG SKGKGFQG MKR FAGQ A+HGVSKTH
Sbjct: 51 RTGALGIKAGMIAEFDRWGTRHELTVIQLDNCQVVQVKEEATNGYTALQLGICDAKEKNVTKPLRVHYSKAGVKPKRKLGEFRVAEDGILPVGTQIHATHFVPGQLVDVCGTSKGKGFQGAMKRHNFAGQRATHGVSKTH 190
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: W4GYX6_9STRA (50S ribosomal protein L3 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYX6_9STRA) HSP 1 Score: 177 bits (450), Expect = 4.070e-52 Identity = 88/158 (55.70%), Postives = 111/158 (70.25%), Query Frame = 1
Query: 79 VRPPEV-FEIRPWNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKTH 549
V PP + E +PW+ ++R G LA+K+GSM I+D W + HPVTVLQ++EC V QVKT+ G+T+LQLGVG RK +N+ K + +AGV KR++ EFRV+ DAL+P G L A HF PGQ +DVCG SKGKGFQG MKR F GQ ASHG S H
Sbjct: 37 VAPPAISLENKPWSSDSKRTGLLAVKMGSMHIYDDWGLAHPVTVLQVEECQVTQVKTKEVHGFTSLQLGVGLRKERNITKPVLGHLAKAGVPAKRELHEFRVSDDALIPAGTTLNALHFSPGQFIDVCGTSKGKGFQGVMKRHNFGGQPASHGNSLAH 194
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A835Z1M4_9STRA (Translation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M4_9STRA) HSP 1 Score: 175 bits (444), Expect = 5.800e-52 Identity = 88/127 (69.29%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 169 IFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKTH 549
I+D+W RH VTVL LD C V QV E T GYTA+Q+G GE K KNV K+ F +AGV PKR++ EFRVT DALLPVGFRLRAQHFVPGQ +DV G +KGKGFQGGMKRW F GQ ASHGVSKTH
Sbjct: 4 IWDAWGERHAVTVLHLDACQVTQVCREETHGYTAVQVGAGEAKPKNVRKSLAGLFAKAGVPPKRRLGEFRVTPDALLPVGFRLRAQHFVPGQLIDVRGTTKGKGFQGGMKRWNFKGQRASHGVSKTH 130
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A067BQA7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BQA7_SAPPC) HSP 1 Score: 173 bits (439), Expect = 9.770e-51 Identity = 85/151 (56.29%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 94 VFEIRPWNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKT 546
E +PW +++R G LA K+G +++FD W + H TVLQ++EC V QVK + T G+T+LQ+G G RK KNV K + +AGV KR++ EFRVT DAL+P G L A HF PGQ VDVCG SKGKGFQG MKR FAGQ ASHG SKT
Sbjct: 22 ALEAKPWTPESKRTGLLATKMGMISVFDDWGLSHACTVLQVEECQVTQVKDKETHGFTSLQIGAGLRKAKNVTKPVLGHLAKAGVPAKRELAEFRVTDDALIPAGTTLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKT 172
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A6G0WWS3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWS3_9STRA) HSP 1 Score: 173 bits (438), Expect = 2.090e-50 Identity = 86/151 (56.95%), Postives = 106/151 (70.20%), Query Frame = 1
Query: 97 FEIRPWNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKTH 549
E +PW +++R G LA+K+G M I+D W + HPVTVLQ++EC V QVKT+ G+++LQLGVG RK +NV+K + +AGV KR + EFRV+ DALLP G L A HF PGQ VDVC SKGKGFQG MKR FAGQ ASHG S H
Sbjct: 37 LENKPWTPESKRTGLLAVKMGCMHIYDDWGLAHPVTVLQVEECQVTQVKTKDVHGFSSLQLGVGLRKERNVSKPVLAHLAKAGVPAKRSLQEFRVSEDALLPPGTTLNALHFAPGQYVDVCATSKGKGFQGVMKRHNFAGQPASHGNSLAH 187
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A024U2L8_9STRA (50S ribosomal protein L3 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2L8_9STRA) HSP 1 Score: 172 bits (437), Expect = 3.200e-50 Identity = 85/152 (55.92%), Postives = 107/152 (70.39%), Query Frame = 1
Query: 94 VFEIRPWNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKTH 549
E++PW +++R G LA+K G M I+D W + HPVTVLQ++EC V QVKT+ G++++QLGVG RK +NV K + +AGV KR++ EFRV+ DAL+P G L A HF PGQ VDVCG SKGKGFQG MKR FAGQ ASHG S H
Sbjct: 38 ALELKPWTPESKRTGLLAVKQGCMHIYDDWGMAHPVTVLQVEECQVTQVKTKDVHGFSSIQLGVGLRKERNVTKPVLGHLAKAGVPAKRELHEFRVSDDALIPAGTTLNALHFSPGQYVDVCGKSKGKGFQGVMKRHNFAGQPASHGNSLAH 189
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A024U204_9STRA (50S ribosomal protein L3, variant n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U204_9STRA) HSP 1 Score: 169 bits (429), Expect = 5.100e-50 Identity = 83/151 (54.97%), Postives = 107/151 (70.86%), Query Frame = 1
Query: 94 VFEIRPWNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKT 546
E++PW +++R G LA+K G M I+D W + HPVTVLQ++EC V QVKT+ G++++QLGVG RK +NV K + +AGV KR++ EFRV+ DAL+P G L A HF PGQ VDVCG SKGKGFQG MKR FAGQ ASHG ++
Sbjct: 38 ALELKPWTPESKRTGLLAVKQGCMHIYDDWGMAHPVTVLQVEECQVTQVKTKDVHGFSSIQLGVGLRKERNVTKPVLGHLAKAGVPAKRELHEFRVSDDALIPAGTTLNALHFSPGQYVDVCGKSKGKGFQGVMKRHNFAGQPASHGPRQS 188
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A1Y2GZZ8_9FUNG (Translation protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GZZ8_9FUNG) HSP 1 Score: 171 bits (433), Expect = 1.000e-49 Identity = 88/160 (55.00%), Postives = 105/160 (65.62%), Query Frame = 1
Query: 76 EVRPPEVFEIRP--WNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKTH 549
+ RP +P W + R G +A K G A++D W VR PVTVLQ+++C VVQV E T GYTALQ+G +R KNVNK + F++AGV PKRK+ EF VT DA+LPVG L A HFVPGQ VD + GKGFQG MKR GF GQ ASHG S TH
Sbjct: 17 QCRPLVTAAAQPATWTHNSLRAGVIARKKGMTAMWDEWGVRIPVTVLQIEDCQVVQVLNEETHGYTALQIGCSDRSEKNVNKPNLGHFQKAGVEPKRKLFEFHVTPDAVLPVGTELVASHFVPGQYVDCSAPTIGKGFQGAMKRHGFGGQPASHGTSLTH 176
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Match: A0A1V9ZYU3_9STRA (50S ribosomal protein L3-2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU3_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.140e-49 Identity = 82/151 (54.30%), Postives = 106/151 (70.20%), Query Frame = 1
Query: 94 VFEIRPWNRQARRCGALAMKVGSMAIFDSWAVRHPVTVLQLDECDVVQVKTEATDGYTALQLGVGERKWKNVNKAQIERFRQAGVNPKRKVMEFRVTVDALLPVGFRLRAQHFVPGQKVDVCGISKGKGFQGGMKRWGFAGQGASHGVSKT 546
E + W +++R G LA+K+G M ++D W + HP TVLQ++EC V Q+K + T G++A+QLG G RK KN+ K + +AGV KR++ EFRV+ DAL+P G +L A HF PGQ VDVCG SKGKGFQG MKR FAGQ ASHG SKT
Sbjct: 22 ALEPKQWTPESKRTGLLAVKMGMMHVYDDWGLAHPCTVLQVEECQVTQIKDKETHGFSAIQLGAGLRKEKNLTKPVLGHLAKAGVPAKRELQEFRVSDDALIPAGTKLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKT 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88136.16338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88136.16338.1 >prot_H-elongata_contig88136.16338.1 ID=prot_H-elongata_contig88136.16338.1|Name=mRNA_H-elongata_contig88136.16338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp MRSAGDEGRVDGDFRLLGGASPCDGAAAGRVRRGAGEDGGHRRLHSPAARback to top mRNA from alignment at H-elongata_contig88136:487..2633+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88136.16338.1 ID=mRNA_H-elongata_contig88136.16338.1|Name=mRNA_H-elongata_contig88136.16338.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2147bp|location=Sequence derived from alignment at H-elongata_contig88136:487..2633+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88136:487..2633+ >mRNA_H-elongata_contig88136.16338.1 ID=mRNA_H-elongata_contig88136.16338.1|Name=mRNA_H-elongata_contig88136.16338.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig88136:487..2633+ (Himanthalia elongata Himel1 dioecious)back to top |