mRNA_H-elongata_contig88096.16335.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: D8LS40_ECTSI (Rab50, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS40_ECTSI) HSP 1 Score: 225 bits (574), Expect = 8.040e-73 Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 1
Query: 7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKV 372
L + +A+DGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGK+VLAIACTKTDMESKRVVSRARAE F +EVGGI+CETSAKENWGV+ELF +V
Sbjct: 50 LTKQITATDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKLVLAIACTKTDMESKRVVSRARAEHFATEVGGIICETSAKENWGVNELFARV 171
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S2XTR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTR6_9STRA) HSP 1 Score: 194 bits (492), Expect = 7.440e-61 Identity = 90/123 (73.17%), Postives = 104/123 (84.55%), Query Frame = 1
Query: 7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
L + G CKMQIWDTAGQERFRAMAP+YYRNAA A+VCFDI DE+SF KMKDWVEEL+TNVPEGK+VLAIAC KTD+ES RVVSRARAEQ+++ + I CETSAKENWGV+E+F KV+
Sbjct: 50 LTKKIQTEGGVNCKMQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDEDSFTKMKDWVEELKTNVPEGKLVLAIACNKTDLESNRVVSRARAEQYSAAIKAIYCETSAKENWGVNEIFEKVS 172
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S3Y4J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4J2_HETAK) HSP 1 Score: 187 bits (474), Expect = 1.590e-57 Identity = 84/113 (74.34%), Postives = 99/113 (87.61%), Query Frame = 1
Query: 25 ASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELF 363
A+DGT CKMQIWDTAGQERFRAMA +YYRNAA A+VCFDI DEESF KMKDWV+EL+ NVPEG++VLAIA TKTD+E++R VSR RAEQ+ +G + CETSAKENWGV+E+F
Sbjct: 57 AADGTACKMQIWDTAGQERFRAMASMYYRNAAAAIVCFDITDEESFSKMKDWVQELKANVPEGRLVLAIAATKTDLEAQRAVSRGRAEQYAQSIGALCCETSAKENWGVTEVF 169
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S2BGJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGJ2_9STRA) HSP 1 Score: 167 bits (424), Expect = 5.480e-50 Identity = 80/123 (65.04%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
L + DG++CK+QIWDTAGQERFRAMAP+YYRNAA A+VCFDI DE SF MKDWV+ELR N + ++LAIAC K D+ S RVVSR RAE F S + IL +TSAKEN GV+ELF KVT
Sbjct: 45 LTKKVQLEDGSMCKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDENSFSTMKDWVQELRRNCQDRDLILAIACNKADLSSTRVVSRERAESFASSIKAILMDTSAKENEGVNELFQKVT 167
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A835ZBF8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF8_9STRA) HSP 1 Score: 163 bits (413), Expect = 3.460e-49 Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 1
Query: 31 DGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAI--ACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELF 363
+G +CK+QIWDTAGQERFRAMAP+YYRNAA A+VC DI DEESF KMKDWVEE++ NVP G+ LAI A KTD+E +RVVSRARAE+F + +G + ETSA+ENWGV+ LF
Sbjct: 46 NGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLF 158
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S3NK22_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK22_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.080e-47 Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 1
Query: 7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
L + S+G CK+QIWDTAGQERFRAMAP+YYRNAA A+VCFD+ DE +F MKDWVEEL+TNV + +V+AIAC K D+++++V SRARAE F + I+ +TSAKEN+GVSELFT V+
Sbjct: 53 LTKKIVTSNGDACKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDVTDESTFNTMKDWVEELKTNVVDKNLVIAIACNKADLDTRQV-SRARAESFARSIDAIILDTSAKENFGVSELFTAVS 174
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: F0XY01_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY01_AURAN) HSP 1 Score: 159 bits (401), Expect = 1.240e-46 Identity = 74/123 (60.16%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
L + + G CK+QIWDTAGQERFRAMAP+YYRNAA A+VCFD+ DE +F MKDWVEEL+TNV + +V+AIAC K D+++++V SRARAEQF + I+ +TSAKEN+GV+ELF V+
Sbjct: 48 LTKKIVTAQGDACKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDVTDESTFNTMKDWVEELKTNVVDKNLVIAIACNKADLDTRQV-SRARAEQFARSISAIVLDTSAKENFGVAELFAAVS 169
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S3ZPM5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPM5_9STRA) HSP 1 Score: 141 bits (355), Expect = 9.710e-40 Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1
Query: 7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVG-GILCETSAKENWGVSELFTKV 372
L + + G CK+QIWDTAGQERFRAMAP+YYRNAA AVVCFD D+ +FQ M+ WVEELR NV + K+V+AIA TK+D++ R +R +AE+F S + ++ ETSAK + GV ELF V
Sbjct: 53 LTKKIKTARGDDCKIQIWDTAGQERFRAMAPMYYRNAAAAVVCFDGTDQRTFQTMRTWVEELRANVDDKKLVIAIAITKSDLDENRAETRRKAEEFASSINDALVLETSAKNDVGVRELFATV 175
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A0M0LQE4_9EUKA (Gtp-binding protein rab11 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQE4_9EUKA) HSP 1 Score: 134 bits (337), Expect = 4.300e-37 Identity = 63/108 (58.33%), Postives = 83/108 (76.85%), Query Frame = 1
Query: 49 MQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKV 372
+QIWDTAGQERFR+MAPLYYR A A++ F I DE SF+K+K+WV EL++NV E +VLAIAC K D+ +R+VS A+Q+ S +G ++ ETSAK N GVS+LF +V
Sbjct: 64 LQIWDTAGQERFRSMAPLYYRGAVAAILVFSITDEASFEKLKEWVRELQSNVDEP-LVLAIACNKADLADQRIVSMETAQQYASSIGALIYETSAKSNTGVSQLFNEV 170
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A8J5XZ05_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZ05_DIALT) HSP 1 Score: 130 bits (326), Expect = 1.410e-35 Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1
Query: 31 DGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
+G +QIWDTAGQERFR+MAPLYYR A A++ FDI ++ SF KMK+WV EL+ NV E +VLAIAC K D+ +RVV +A Q+ +++G I+ ETSAKEN GV LF V+
Sbjct: 51 NGQKITLQIWDTAGQERFRSMAPLYYRGAVAAILVFDITNDVSFDKMKEWVRELQANVEEP-LVLAIACNKADLREQRVVQFEQAAQYAAKIGAIIVETSAKENVGVDALFMDVS 164 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88096.16335.1 >prot_H-elongata_contig88096.16335.1 ID=prot_H-elongata_contig88096.16335.1|Name=mRNA_H-elongata_contig88096.16335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp ARLVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDback to top mRNA from alignment at H-elongata_contig88096:1183..2179- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88096.16335.1 ID=mRNA_H-elongata_contig88096.16335.1|Name=mRNA_H-elongata_contig88096.16335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=997bp|location=Sequence derived from alignment at H-elongata_contig88096:1183..2179- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88096:1183..2179- >mRNA_H-elongata_contig88096.16335.1 ID=mRNA_H-elongata_contig88096.16335.1|Name=mRNA_H-elongata_contig88096.16335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig88096:1183..2179- (Himanthalia elongata Himel1 dioecious)back to top |