mRNA_H-elongata_contig88037.16333.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig88037.16333.1
Unique Name	mRNA_H-elongata_contig88037.16333.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig88037.16333.1 vs. uniprot

BLAST of mRNA_H-elongata_contig88037.16333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig88037	contig	H-elongata_contig88037:448..2412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-18_002725.1
Exons	3
Model size	1250
Cds size	1236
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig88037.16333.1	prot_H-elongata_contig88037.16333.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig88037 459..2409 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931281.724822-UTR-H-elongata_contig88037:447..458	1622931281.724822-UTR-H-elongata_contig88037:447..458	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig88037 448..458 +
1691679771.9253645-UTR-H-elongata_contig88037:447..458	1691679771.9253645-UTR-H-elongata_contig88037:447..458	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig88037 448..458 +
1622931281.7867482-UTR-H-elongata_contig88037:2409..2412	1622931281.7867482-UTR-H-elongata_contig88037:2409..2412	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig88037 2410..2412 +
1691679771.9654012-UTR-H-elongata_contig88037:2409..2412	1691679771.9654012-UTR-H-elongata_contig88037:2409..2412	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig88037 2410..2412 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931281.7416518-CDS-H-elongata_contig88037:458..557	1622931281.7416518-CDS-H-elongata_contig88037:458..557	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig88037 459..557 +
1691679771.9344695-CDS-H-elongata_contig88037:458..557	1691679771.9344695-CDS-H-elongata_contig88037:458..557	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig88037 459..557 +
1622931281.7587554-CDS-H-elongata_contig88037:1101..1811	1622931281.7587554-CDS-H-elongata_contig88037:1101..1811	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig88037 1102..1811 +
1691679771.9437733-CDS-H-elongata_contig88037:1101..1811	1691679771.9437733-CDS-H-elongata_contig88037:1101..1811	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig88037 1102..1811 +
1622931281.772943-CDS-H-elongata_contig88037:1982..2409	1622931281.772943-CDS-H-elongata_contig88037:1982..2409	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig88037 1983..2409 +
1691679771.95399-CDS-H-elongata_contig88037:1982..2409	1691679771.95399-CDS-H-elongata_contig88037:1982..2409	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig88037 1983..2409 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig88037:448..2412+
coding sequence from alignment at H-elongata_contig88037:448..2412+

protein sequence of mRNA_H-elongata_contig88037.16333.1

>prot_H-elongata_contig88037.16333.1 ID=prot_H-elongata_contig88037.16333.1|Name=mRNA_H-elongata_contig88037.16333.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=412bp
MGPAGQHGGQPYTMMAMQPPLAGQLRGQMPPGQPGVIMMQQQQQQTWQQQ
QQQQQMEATAGGAPSSYAPQIPGHAIYSPGFVDQTAGSGAAVAASAGGSG
GSVGTVGGLGGLPSPARAGATMRNQHQQQQQSAPPQQQQQQQQSVPQPQQ
QQHQHPQQRQHAQHPQQHQQISYLQQPLLQQTAMAGVNQTPPQGPHHHQH
PQSPQQQSLSQQPQQMSQHQQPQQLPHQRNQPHHPAGLHQTPHMPHAGVA
MGGFVSAQDYYGGVQQQAAMSYQDPNMINMAMGYGLQQQQLQQQQQQQRY
VGPMQTPHQNHQQVHQPQPQMHQHPFPHQVYPFGGMQQQQPQPMPPQHHP
HHQRQQYHRGGNQHQHGGGGRGAGGRRGGNSQHMVMHGGGGAGGGSSVPN
PGYQKDFPPLA*

mRNA from alignment at H-elongata_contig88037:448..2412+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig88037.16333.1 ID=mRNA_H-elongata_contig88037.16333.1|Name=mRNA_H-elongata_contig88037.16333.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1965bp|location=Sequence derived from alignment at H-elongata_contig88037:448..2412+ (Himanthalia elongata Himel1 dioecious)
AGCATACCCTCATGGGGCCCGCTGGCCAGCACGGAGGGCAGCCTTACACG
ATGATGGCGATGCAGCCTCCGCTGGCGGGACAACTTCGGGGGCAGATGCC
GCCGGGACAGGTACGCTCGGCGATCAACCCATGCTCTTTTCCTTGTTTCG
TCCGGAGGTTTGTGTGCCAAGGTTTGTTCTTGGTCGCGTTGTTGCGGATT
GGCTGATCAGGTTGGGATGGGGGGATTTACGGTCGCCCCTTACAAAACCT
CAGCTGGTGCCAAGGTTTGATTGCCTCGAAAGGCGTGGATCATTCACCCC
CGCTGCGGGGACAAAAAAAACTACGGCCCCGTGTTGTAGTGTTGACGATG
CAGACATGACGGTCTCTAAGACAGCATTTCGGAGAAAATATTTTGGAAAC
CGTTTTTGTAATTGCTTTGCTTTTCCCCTCTTAAACCCGCCGCGTTGCGG
AGAAGAGAGAGAAGGGAGACGGAAGAGGGGGGGTTCCAGCGTGTGCGTAA
CCGCTGAGAAAATATAATGGAAACCCTCGGGTGTTTCGAAGAGGGTGTCG
GGGAGGGAATATACTGCTTTTCGCCTTCGTGTCTTTGTCGAGTTTGCGTT
GCCGTACCTAATGCGCCCTCGCGTCCCTCCCCTTCCCACATGTGCAACAT
GCAGCCGGGCGTGATCATGATGCAGCAACAGCAGCAGCAAACGTGGCAAC
AGCAGCAGCAGCAGCAGCAAATGGAGGCCACAGCTGGTGGAGCTCCCTCG
TCGTACGCTCCCCAGATCCCCGGCCATGCGATATACTCCCCCGGGTTCGT
TGACCAGACAGCAGGGTCAGGTGCCGCGGTAGCAGCGTCGGCCGGGGGCA
GTGGCGGTAGTGTTGGAACTGTTGGTGGATTAGGCGGTCTGCCTTCACCA
GCGAGGGCTGGGGCGACCATGCGCAATCAGCATCAGCAGCAGCAACAGTC
GGCGCCGCCGCAGCAACAACAACAACAGCAACAGTCGGTGCCGCAACCGC
AGCAACAACAACATCAGCACCCACAGCAGCGTCAGCACGCACAACACCCA
CAACAGCATCAGCAGATTTCGTACCTGCAGCAGCCGCTTCTCCAACAGAC
GGCCATGGCAGGTGTGAACCAAACTCCGCCGCAGGGGCCGCATCATCACC
AGCACCCTCAGTCTCCTCAACAACAGTCGCTATCGCAGCAGCCACAACAG
ATGTCTCAGCATCAGCAACCACAGCAGCTTCCACACCAGCGGAACCAGCC
TCACCATCCAGCTGGACTCCATCAGACTCCGCACATGCCGCACGCCGGAG
TTGCTATGGGCGGCTTCGTGAGTGCACAGGATTACTATGGCGGCGTTCAG
CAGCAAGCAGCTATGTAAGGACCAGGAATGTGAAAAATGTGATTCAGACT
TCGCACCGGATATTTTTGTTTGTTTGGTTTCATTGATGTTGCAGCGTATG
ATCTTCAACCACTGTAGACACGTGAGAAATGGATATTGAACTCCCGTCCC
GATGCTTGTTTGTTTTTTCTTTTGCTGCTCGGCAGGAGCTACCAAGACCC
GAACATGATTAACATGGCCATGGGATATGGGCTTCAGCAGCAACAACTCC
AACAGCAGCAGCAACAGCAGCGGTACGTGGGACCAATGCAAACCCCTCAC
CAAAATCACCAGCAGGTTCATCAGCCCCAGCCTCAAATGCACCAGCACCC
GTTCCCACACCAAGTGTACCCTTTTGGAGGGATGCAGCAACAACAGCCGC
AGCCCATGCCGCCACAGCACCACCCGCACCATCAGCGGCAGCAGTACCAC
CGAGGTGGTAATCAGCATCAACACGGGGGCGGTGGAAGGGGTGCCGGAGG
CCGACGGGGGGGGAACAGTCAGCACATGGTAATGCATGGAGGCGGTGGCG
CGGGGGGGGGGAGCTCTGTGCCCAACCCCGGTTATCAGAAAGACTTTCCT
CCTTTGGCCTGAGAG

Coding sequence (CDS) from alignment at H-elongata_contig88037:448..2412+

>mRNA_H-elongata_contig88037.16333.1 ID=mRNA_H-elongata_contig88037.16333.1|Name=mRNA_H-elongata_contig88037.16333.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2472bp|location=Sequence derived from alignment at H-elongata_contig88037:448..2412+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCCCGCTGGCCAGCACGGAGGGCAGCCTTACACGATGATGGCGAT
GCAGCCTCCGCTGGCGGGACAACTTCGGGGGCAGATGCCGCCGGGACAGA
TGGGGCCCGCTGGCCAGCACGGAGGGCAGCCTTACACGATGATGGCGATG
CAGCCTCCGCTGGCGGGACAACTTCGGGGGCAGATGCCGCCGGGACAGCC
GGGCGTGATCATGATGCAGCAACAGCAGCAGCAAACGTGGCAACAGCAGC
AGCAGCAGCAGCAAATGGAGGCCACAGCTGGTGGAGCTCCCTCGTCGTAC
GCTCCCCAGATCCCCGGCCATGCGATATACTCCCCCGGGTTCGTTGACCA
GACAGCAGGGTCAGGTGCCGCGGTAGCAGCGTCGGCCGGGGGCAGTGGCG
GTAGTGTTGGAACTGTTGGTGGATTAGGCGGTCTGCCTTCACCAGCGAGG
GCTGGGGCGACCATGCGCAATCAGCATCAGCAGCAGCAACAGTCGGCGCC
GCCGCAGCAACAACAACAACAGCAACAGTCGGTGCCGCAACCGCAGCAAC
AACAACATCAGCACCCACAGCAGCGTCAGCACGCACAACACCCACAACAG
CATCAGCAGATTTCGTACCTGCAGCAGCCGCTTCTCCAACAGACGGCCAT
GGCAGGTGTGAACCAAACTCCGCCGCAGGGGCCGCATCATCACCAGCACC
CTCAGTCTCCTCAACAACAGTCGCTATCGCAGCAGCCACAACAGATGTCT
CAGCATCAGCAACCACAGCAGCTTCCACACCAGCGGAACCAGCCTCACCA
TCCAGCTGGACTCCATCAGACTCCGCACATGCCGCACGCCGGAGTTGCTA
TGGGCGGCTTCGTGAGTGCACAGGATTACTATGGCGGCGTTCAGCAGCAA
GCAGCTATCCGGGCGTGATCATGATGCAGCAACAGCAGCAGCAAACGTGG
CAACAGCAGCAGCAGCAGCAGCAAATGGAGGCCACAGCTGGTGGAGCTCC
CTCGTCGTACGCTCCCCAGATCCCCGGCCATGCGATATACTCCCCCGGGT
TCGTTGACCAGACAGCAGGGTCAGGTGCCGCGGTAGCAGCGTCGGCCGGG
GGCAGTGGCGGTAGTGTTGGAACTGTTGGTGGATTAGGCGGTCTGCCTTC
ACCAGCGAGGGCTGGGGCGACCATGCGCAATCAGCATCAGCAGCAGCAAC
AGTCGGCGCCGCCGCAGCAACAACAACAACAGCAACAGTCGGTGCCGCAA
CCGCAGCAACAACAACATCAGCACCCACAGCAGCGTCAGCACGCACAACA
CCCACAACAGCATCAGCAGATTTCGTACCTGCAGCAGCCGCTTCTCCAAC
AGACGGCCATGGCAGGTGTGAACCAAACTCCGCCGCAGGGGCCGCATCAT
CACCAGCACCCTCAGTCTCCTCAACAACAGTCGCTATCGCAGCAGCCACA
ACAGATGTCTCAGCATCAGCAACCACAGCAGCTTCCACACCAGCGGAACC
AGCCTCACCATCCAGCTGGACTCCATCAGACTCCGCACATGCCGCACGCC
GGAGTTGCTATGGGCGGCTTCGTGAGTGCACAGGATTACTATGGCGGCGT
TCAGCAGCAAGCAGCTATGAGCTACCAAGACCCGAACATGATTAACATGG
CCATGGGATATGGGCTTCAGCAGCAACAACTCCAACAGCAGCAGCAACAG
CAGCGGTACGTGGGACCAATGCAAACCCCTCACCAAAATCACCAGCAGGT
TCATCAGCCCCAGCCTCAAATGCACCAGCACCCGTTCCCACACCAAGTGT
ACCCTTTTGGAGGGATGCAGCAACAACAGCCGCAGCCCATGCCGCCACAG
CACCACCCGCACCATCAGCGGCAGCAGTACCACCGAGGTGGTAATCAGCA
TCAACACGGGGGCGGTGGAAGGGGTGCCGGAGGCCGACGGGGGGGGAACA
GTCAGCACATGGTAATGCATGGAGGCGGTGGCGCGGGGGGGGGGAGCTCT
GTGCCCAACCCCGGTTATCAGAAAGACTTTCCTCCTTTGGCCTGAGAGCT
ACCAAGACCCGAACATGATTAACATGGCCATGGGATATGGGCTTCAGCAG
CAACAACTCCAACAGCAGCAGCAACAGCAGCGGTACGTGGGACCAATGCA
AACCCCTCACCAAAATCACCAGCAGGTTCATCAGCCCCAGCCTCAAATGC
ACCAGCACCCGTTCCCACACCAAGTGTACCCTTTTGGAGGGATGCAGCAA
CAACAGCCGCAGCCCATGCCGCCACAGCACCACCCGCACCATCAGCGGCA
GCAGTACCACCGAGGTGGTAATCAGCATCAACACGGGGGCGGTGGAAGGG
GTGCCGGAGGCCGACGGGGGGGGAACAGTCAGCACATGGTAATGCATGGA
GGCGGTGGCGCGGGGGGGGGGAGCTCTGTGCCCAACCCCGGTTATCAGAA
AGACTTTCCTCCTTTGGCCTGA