prot_H-elongata_contig88036.16332.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88036.16332.1
Unique Nameprot_H-elongata_contig88036.16332.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 2.350e-38
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    1 MDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGA-----DGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            MDYYSA+VGQLQ+QN+GG+   RQ    XXXXXXXXX       DGMA+P VHTGV+RMRGLPFSATKQDV+NFFQG+PVTEDTIQFVVRGDGRVTGEAFVSF S ++SE
Sbjct:  166 MDYYSAVVGQLQSQNMGGM--QRQXXXXXXXXXXXXXXXXXXXPDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 273          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.090e-22
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0
Query:   39 ADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            A G A  A HTGV+RMRGLPFSATK DV+NFFQGL V ++++QFVVRGDGRVTGEAFV+  S +++E
Sbjct:  126 ATGQAGTAEHTGVIRMRGLPFSATKADVVNFFQGLNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAE 192          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.460e-17
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 0
Query:   48 HTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPS 100
            HTG+LR+RGLPFSA+K DV++FF G  + ED+I+FVVR DGRVTGE++V F S
Sbjct:   23 HTGILRLRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTS 75          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A7S3YKW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKW9_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 4.050e-17
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 0
Query:   48 HTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            HTG LR+RG PF+ATK+DV+ FF+G PV ED+I+FV R DG++TGE +V  PS+ D++
Sbjct:   23 HTGYLRLRGCPFTATKRDVLGFFRGHPVVEDSIEFVRRADGKMTGEVYVRLPSAEDAK 80          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A833QXZ1_9POAL (Heterogeneous nuclear ribonucleoprotein F n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QXZ1_9POAL)

HSP 1 Score: 82.0 bits (201), Expect = 1.270e-16
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 0
Query:    2 DYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIP-AVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            DYY+AI  ++ +  IGG    R               ADG     AVHTGVLRMRGLPFSATK+++M+FF+   +TE+ I  V+  DGR +GEAFV F ++ +S+
Sbjct:  135 DYYTAIAQEVSSGKIGGSSPRRNA-----PPPKPKPSADGPKDDHAVHTGVLRMRGLPFSATKEEIMDFFREFELTENRIHLVLNRDGRPSGEAFVEFENAEESK 234          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: UPI0010A32602 (heterogeneous nuclear ribonucleoprotein H2-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A32602)

HSP 1 Score: 80.9 bits (198), Expect = 3.220e-16
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0
Query:    2 DYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            +YY AI  ++     GG+G    GGG            D     A HTGVLR+RGLPFSATK D+M FF+   V+ED I  V+  +GR +GEA+V F S+ DS+
Sbjct:  131 EYYKAIANEVSDAR-GGIG---GGGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGLPFSATKDDIMEFFKDFVVSEDCIHIVMNSEGRPSGEAYVEFASAEDSK 230          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A7J0H4Z3_9ERIC (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0H4Z3_9ERIC)

HSP 1 Score: 80.1 bits (196), Expect = 3.400e-16
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0
Query:    2 DYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            +YY AI  ++   +          GG           +D     A HTGVLR+RGLPFSA+K+D+M+FF+   ++ED I  ++  +GR TGEAFV F S+ DS+
Sbjct:  117 EYYKAIANEVSDSH----------GGSPHRNVSRAKSSDNGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVISEDAIHIIINSEGRPTGEAFVGFASAEDSK 210          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A833VDL5_9POAL (Heterogeneous nuclear ribonucleoprotein F n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VDL5_9POAL)

HSP 1 Score: 79.7 bits (195), Expect = 9.050e-16
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 0
Query:    2 DYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIP-AVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            DYY+A+  ++ +  +GG    R               ADG      V+TG+LRMRGLPFSA K+++M+FF+   +TE  ++ VV  DGR +GEAFV F SS DS+
Sbjct:  132 DYYAAVAQEVSSGKVGGSSPRRTA-----PPPRPKLSADGSKDEHVVYTGILRMRGLPFSAGKEEIMDFFKDFELTEQRVRLVVNSDGRPSGEAFVEFNSSEDSK 231          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A7C8YU07_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YU07_OPUST)

HSP 1 Score: 80.5 bits (197), Expect = 1.320e-15
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   45 PAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            P  HTG+LR+RGLPFSAT++D+M FF G  +++D++      DGR TGEAFV F S+ DSE
Sbjct:  282 PVKHTGILRLRGLPFSATEEDIMEFFNGFVLSKDSVHITFNADGRATGEAFVEFASAEDSE 342          
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A5K1EDJ4_9MAGN (RRM domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1EDJ4_9MAGN)

HSP 1 Score: 79.0 bits (193), Expect = 1.510e-15
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   48 HTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 105
            HTGVL++RGLPFSATK+D+++FF+   V+ED +  V   DGR TGEAFV F S+ DS+
Sbjct:  165 HTGVLKLRGLPFSATKEDILDFFKDFEVSEDNVHMVFNSDGRATGEAFVEFASAEDSK 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML1_ECTSI2.350e-3875.45Heterogeneous nuclear ribonucleoprotein, putative ... [more]
A0A836CJZ5_9STRA4.090e-2268.66RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2V6E7_9STRA1.460e-1766.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YKW9_HETAK4.050e-1758.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A833QXZ1_9POAL1.270e-1644.76Heterogeneous nuclear ribonucleoprotein F n=1 Tax=... [more]
UPI0010A326023.220e-1644.23heterogeneous nuclear ribonucleoprotein H2-like n=... [more]
A0A7J0H4Z3_9ERIC3.400e-1639.42RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
A0A833VDL5_9POAL9.050e-1641.90Heterogeneous nuclear ribonucleoprotein F n=1 Tax=... [more]
A0A7C8YU07_OPUST1.320e-1555.74Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
A0A5K1EDJ4_9MAGN1.510e-1558.62RRM domain-containing protein (Fragment) n=2 Tax=N... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 45..105
e-value: 9.1E-16
score: 59.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 53..104
e-value: 8.1E-5
score: 22.4
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 15..105
NoneNo IPR availablePANTHERPTHR13976:SF22AT27789Pcoord: 15..105
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 38..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88036contigH-elongata_contig88036:235..2240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88036.16332.1mRNA_H-elongata_contig88036.16332.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88036 130..2270 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88036.16332.1 ID=prot_H-elongata_contig88036.16332.1|Name=mRNA_H-elongata_contig88036.16332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MDYYSAIVGQLQTQNIGGVGINRQGGGLGHGGGGGGIGADGMAIPAVHTG
VLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPS
SSDSEP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf