mRNA_H-elongata_contig88036.16332.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI) HSP 1 Score: 157 bits (398), Expect = 8.720e-45 Identity = 93/120 (77.50%), Postives = 103/120 (85.83%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGA-----DGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RYIEIFQSKRMDYYSA+VGQLQ+QN+GG+ RQ XXXXXXXXX DGMA+P VHTGV+RMRGLPFSATKQDV+NFFQG+PVTEDTIQFVVRGDGRVTGEAFVSF S ++SE
Sbjct: 156 RYIEIFQSKRMDYYSAVVGQLQSQNMGGM--QRQXXXXXXXXXXXXXXXXXXXPDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 273
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.240e-26 Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RYIEIFQSKR DYY A QG G A G A A HTGV+RMRGLPFSATK DV+NFFQGL V ++++QFVVRGDGRVTGEAFV+ S +++E
Sbjct: 102 RYIEIFQSKRADYYHA----------------SQGSGSAA--------ATGQAGTAEHTGVIRMRGLPFSATKADVVNFFQGLNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAE 192
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: UPI0010A32602 (heterogeneous nuclear ribonucleoprotein H2-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A32602) HSP 1 Score: 97.1 bits (240), Expect = 1.090e-21 Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RY+E+F+SKR +YY AI ++ GG+G GGG D A HTGVLR+RGLPFSATK D+M FF+ V+ED I V+ +GR +GEA+V F S+ DS+
Sbjct: 120 RYVEVFRSKRQEYYKAIANEVSDAR-GGIG---GGGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGLPFSATKDDIMEFFKDFVVSEDCIHIVMNSEGRPSGEAYVEFASAEDSK 230
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A833QXZ1_9POAL (Heterogeneous nuclear ribonucleoprotein F n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QXZ1_9POAL) HSP 1 Score: 95.9 bits (237), Expect = 3.280e-21 Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIP-AVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RYIE+F+ KR DYY+AI ++ + IGG R ADG AVHTGVLRMRGLPFSATK+++M+FF+ +TE+ I V+ DGR +GEAFV F ++ +S+
Sbjct: 124 RYIEVFRCKREDYYTAIAQEVSSGKIGGSSPRRNA-----PPPKPKPSADGPKDDHAVHTGVLRMRGLPFSATKEEIMDFFREFELTENRIHLVLNRDGRPSGEAFVEFENAEESK 234
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A7J0H4Z3_9ERIC (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0H4Z3_9ERIC) HSP 1 Score: 94.4 bits (233), Expect = 5.410e-21 Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RY+E+F+ KR +YY AI ++ + GG +D A HTGVLR+RGLPFSA+K+D+M+FF+ ++ED I ++ +GR TGEAFV F S+ DS+
Sbjct: 106 RYVEVFRCKRQEYYKAIANEVSDSH----------GGSPHRNVSRAKSSDNGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVISEDAIHIIINSEGRPTGEAFVGFASAEDSK 210
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A833VDL5_9POAL (Heterogeneous nuclear ribonucleoprotein F n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VDL5_9POAL) HSP 1 Score: 93.6 bits (231), Expect = 2.360e-20 Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIP-AVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RYIE+F+ KR DYY+A+ ++ + +GG R ADG V+TG+LRMRGLPFSA K+++M+FF+ +TE ++ VV DGR +GEAFV F SS DS+
Sbjct: 121 RYIEVFRCKREDYYAAVAQEVSSGKVGGSSPRRTA-----PPPRPKLSADGSKDEHVVYTGILRMRGLPFSAGKEEIMDFFKDFELTEQRVRLVVNSDGRPSGEAFVEFNSSEDSK 231
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A1U8A713_NELNU (heterogeneous nuclear ribonucleoprotein H3-like isoform X1 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A713_NELNU) HSP 1 Score: 93.2 bits (230), Expect = 2.910e-20 Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RYIE+F+SKR +YY AI ++ GG D A HTGVLR+RGLPFSA K DV+ FF+ +TED++ + DGR TGEAFV FPS+ DS+
Sbjct: 121 RYIEVFRSKRQEYYKAIANEVSDAR----------GGSPHRGGAKARSYDAGKDSAEHTGVLRLRGLPFSAGKDDVIEFFKDFMLTEDSVHITMNLDGRPTGEAFVEFPSAEDSK 225
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A067F1K2_CITSI (RRM domain-containing protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067F1K2_CITSI) HSP 1 Score: 91.3 bits (225), Expect = 4.520e-20 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RY+E+F+SKR +YY AI ++ GG D AVHTG+LR+RGLPFSA K D+M+FF+ ++ED+I + DGR TGEAFV F ++ DS+
Sbjct: 59 RYVEVFRSKRQEYYKAIANEVSDVR----------GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 163
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: A0A2P2JH66_RHIMU (RRM domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JH66_RHIMU) HSP 1 Score: 92.8 bits (229), Expect = 4.540e-20 Identity = 58/156 (37.18%), Postives = 82/156 (52.56%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSEP*RKPYGYSLRGAVRLVSGG---DRAPYE-QDLKEPLVRGR 456
RY+E+F+SKR +YY AI ++ GG D A HTGVLR+RGLPFSA K D+M+FF+ +TE++IQ ++ +GR TGEAFV F S+ DS+ + R+ G + P +DL+E + RGR
Sbjct: 130 RYVEVFRSKRQEYYKAIASEVS-------------GGSPRRSVPRSKSYDEGKDSAEHTGVLRLRGLPFSAGKDDIMDFFKDFVLTEESIQIIMNSEGRPTGEAFVEFASAEDSK--------AAMAKDRMTLGSRYIELFPSSLEDLEESVSRGR 264
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Match: UPI00201ACF4E (heterogeneous nuclear ribonucleoprotein F isoform X4 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201ACF4E) HSP 1 Score: 90.9 bits (224), Expect = 6.650e-20 Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 1 RYIEIFQSKRMDYYSAIVGQLQTQNIGGVGINRQGGGLXXXXXXXXXGADGMAIPAVHTGVLRMRGLPFSATKQDVMNFFQGLPVTEDTIQFVVRGDGRVTGEAFVSFPSSSDSE 345
RY+E+F+SKR DYY AI ++ + +GGG +G A HTGVLR+RGLPFSA K D+M FF+ ++ED++ + +GR TGEAFV F S+ DS+
Sbjct: 61 RYVEVFRSKRQDYYKAIANEVS---------DARGGGSPRRAPRAKSYDEGKD-SAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSEDSVHITMNSEGRPTGEAFVEFASAEDSK 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88036.16332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88036.16332.1 >prot_H-elongata_contig88036.16332.1 ID=prot_H-elongata_contig88036.16332.1|Name=mRNA_H-elongata_contig88036.16332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MDYYSAIVGQLQTQNIGGVGINRQGGGLGHGGGGGGIGADGMAIPAVHTGback to top mRNA from alignment at H-elongata_contig88036:130..2270- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88036.16332.1 ID=mRNA_H-elongata_contig88036.16332.1|Name=mRNA_H-elongata_contig88036.16332.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2141bp|location=Sequence derived from alignment at H-elongata_contig88036:130..2270- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88036:130..2270- >mRNA_H-elongata_contig88036.16332.1 ID=mRNA_H-elongata_contig88036.16332.1|Name=mRNA_H-elongata_contig88036.16332.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig88036:130..2270- (Himanthalia elongata Himel1 dioecious)back to top |