mRNA_H-elongata_contig88013.16329.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88013.16329.1
Unique NamemRNA_H-elongata_contig88013.16329.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: G3G5N9_9PHAE (Eukaryotic translation initiation factor 3 subunit 6 interacting protein (Fragment) n=93 Tax=Fucaceae TaxID=3010 RepID=G3G5N9_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 8.380e-60
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    7 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEADAREQQG 306
            QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKI+RFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKP  ALDFNYFVEDN VVIDEADAREQQG
Sbjct:   65 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKISRFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPALALDFNYFVEDNIVVIDEADAREQQG 164
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: D7FZE6_ECTSI (Eukaryotic translation initiation factor 3 subunit L n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZE6_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.630e-53
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    7 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEADAREQQG 306
            QTQLFMEEV+QQ+LFPQIRSYLKLYTTIGL+KIARFND+DEEQFSAQLVSMKHKLTQMDW MSGD SLLEGKP FA+DFN+FVED TVVIDEADAREQQG
Sbjct:  402 QTQLFMEEVKQQILFPQIRSYLKLYTTIGLEKIARFNDLDEEQFSAQLVSMKHKLTQMDWGMSGDTSLLEGKPSFAMDFNFFVEDKTVVIDEADAREQQG 501
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: A0A835YSE4_9STRA (Eukaryotic translation initiation factor 3 subunit L n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.250e-29
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    7 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDE 282
            Q QLF  E+ QQL FP++RSYLKLY TI + K+ARFN M E  + A LVSMKHKLTQ++W M+ + S L GK   AL+FNYFVED+T+VIDE
Sbjct:  359 QVQLFCHEMSQQLAFPKVRSYLKLYATISIAKMARFNGMSEADYLATLVSMKHKLTQLEWGMNSETSPLTGKLALALEFNYFVEDDTIVIDE 450
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: A0A4P9WFR2_9FUNG (Translation initiation factor 3 complex subunit L (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WFR2_9FUNG)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-14
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    7 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEA 285
            Q ++F+ EVR QLL P IRS+LKLYTT+G+DK+A F D+  ++   QL+  KHK  Q  W      S+LEG+ G A D ++++  + + I E+
Sbjct:  375 QLKIFLSEVRTQLLVPTIRSFLKLYTTLGVDKLATFLDVSPDEVRMQLLVFKHKTRQRRWE---SGSVLEGEFGSASDLDFYLRQDLIYIAES 464
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: A0A6S7HGR6_PARCT (Eukaryotic translation initiation factor 3 subunit L n=3 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7HGR6_PARCT)

HSP 1 Score: 77.0 bits (188), Expect = 2.710e-14
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   19 FMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEADAREQQG 306
            F++E+RQQ L P IRSYLKLYTT+ + K+A F DMDEE    QL+  KHK   + W    DA  LEG+   + D ++++E++ + I  AD + ++G
Sbjct:  425 FLQEMRQQSLIPIIRSYLKLYTTMPITKLAAFLDMDEETLRTQLLCYKHKQRHLTWTKGPDA--LEGEFQSSSDVDFYIENDMIHI--ADTKVERG 516
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: A0A7S2UHH8_9STRA (Eukaryotic translation initiation factor 3 subunit L n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHH8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.700e-14
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    7 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMS--GDASL-------LEGKPGFALDFNYFVEDNTVVIDEAD 288
            Q Q FM E+  Q    ++RSY+KLYT+I + K+A FNDM E +F   LVS KHK+ QM+   +  GD SL       L GK G ALD +Y++ +  V +DEA+
Sbjct:  417 QVQHFMTEMSAQQTMRKLRSYMKLYTSISVGKLAAFNDMTEAEFLPLLVSYKHKMRQMERTTNTEGDDSLAAATDGPLGGKLGTALDIHYYIVNEMVHVDEAE 519
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: UPI001425895B (eukaryotic translation initiation factor 3 subunit L-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425895B)

HSP 1 Score: 76.3 bits (186), Expect = 5.050e-14
Identity = 39/92 (42.39%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 MRQTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVI 276
            M QT++F+EEVRQQLL P+IRS+LKLYTT+ + K+A F ++ EE+F  Q +  KHK+  + W     +S L+G+   A + +++V+ + + I
Sbjct:  417 MLQTKVFLEEVRQQLLIPEIRSFLKLYTTMPIPKLAAFLNLSEEEFRTQFLCFKHKMMNLVWTKG--SSGLDGEFQAASEVDFYVDGDMIHI 506
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: UPI001F03A68F (eukaryotic translation initiation factor 3 subunit L-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03A68F)

HSP 1 Score: 75.9 bits (185), Expect = 6.680e-14
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   19 FMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEADAREQQG 306
            F++E+RQQ L P IRSYLKLY T+ L K+A F DMDEE    QL+  KHK     W    DA  LEG+   + D ++++E++ + I  AD + ++G
Sbjct:  361 FLQEMRQQSLIPTIRSYLKLYKTMPLSKLAAFLDMDEETLRTQLLCYKHKQRHFTWTKGPDA--LEGEFQSSSDVDFYIENDMIHI--ADTKVERG 452
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: A0A2B4RG74_STYPI (Eukaryotic translation initiation factor 3 subunit L n=3 Tax=Scleractinia TaxID=6125 RepID=A0A2B4RG74_STYPI)

HSP 1 Score: 74.7 bits (182), Expect = 1.750e-13
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    7 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEADAREQQG 306
            Q ++FM EV QQ L P IRSYLKLYTT+ + K+A F DMD+ QF  QL+  KHK   + W    DA  LEG+   + + +++++ + + I +     + G
Sbjct:  417 QLKVFMNEVSQQSLIPVIRSYLKLYTTMPIAKLAAFLDMDKSQFRTQLLCFKHKQRNLVWTKGTDA--LEGELQSSSEVDFYIDQDMIHIADTKVERRYG 514
[Close]
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Match: UPI000C7822EE (eukaryotic translation initiation factor 3 subunit L-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7822EE)

HSP 1 Score: 74.3 bits (181), Expect = 2.380e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    7 QTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQLVSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEADAREQQG 306
            Q ++FMEEV+QQL+ P IRSYLKLYTT+ LDK+A F +M  E+F   +++ KHK+  + W      S LEG+     + +++++ N + I +     + G
Sbjct:  397 QLKVFMEEVQQQLMLPTIRSYLKLYTTMPLDKMAGFMEMPSEEFRNHVLAFKHKMRNVVWTKG--TSGLEGEFQSGSEVDFYIDKNMIHIADTKVARRYG 494
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88013.16329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G3G5N9_9PHAE8.380e-6096.00Eukaryotic translation initiation factor 3 subunit... [more]
D7FZE6_ECTSI1.630e-5390.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A835YSE4_9STRA5.250e-2961.96Eukaryotic translation initiation factor 3 subunit... [more]
A0A4P9WFR2_9FUNG1.410e-1443.01Translation initiation factor 3 complex subunit L ... [more]
A0A6S7HGR6_PARCT2.710e-1443.75Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2UHH8_9STRA3.700e-1444.66Eukaryotic translation initiation factor 3 subunit... [more]
UPI001425895B5.050e-1442.39eukaryotic translation initiation factor 3 subunit... [more]
UPI001F03A68F6.680e-1443.75eukaryotic translation initiation factor 3 subunit... [more]
A0A2B4RG74_STYPI1.750e-1340.00Eukaryotic translation initiation factor 3 subunit... [more]
UPI000C7822EE2.380e-1339.00eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88013contigH-elongata_contig88013:969..2153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue8.6e-45
Seed eggNOG ortholog2880.D7FZE6
Preferred nameEIF3L
KEGG koko:K15029
GOsGO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016032,GO:0019080,GO:0019081,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0051704,GO:0070013,GO:0071704,GO:0075525,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG3677@1,KOG3677@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931281.2976227-CDS-H-elongata_contig88013:968..11451622931281.2976227-CDS-H-elongata_contig88013:968..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88013 969..1145 +
1691679771.7654622-CDS-H-elongata_contig88013:968..11451691679771.7654622-CDS-H-elongata_contig88013:968..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88013 969..1145 +
1622931281.3232136-CDS-H-elongata_contig88013:2021..21531622931281.3232136-CDS-H-elongata_contig88013:2021..2153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88013 2022..2153 +
1691679771.7793639-CDS-H-elongata_contig88013:2021..21531691679771.7793639-CDS-H-elongata_contig88013:2021..2153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88013 2022..2153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88013.16329.1prot_H-elongata_contig88013.16329.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88013 969..2153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88013.16329.1

>prot_H-elongata_contig88013.16329.1 ID=prot_H-elongata_contig88013.16329.1|Name=mRNA_H-elongata_contig88013.16329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MRQTQLFMEEVRQQLLFPQIRSYLKLYTTIGLDKIARFNDMDEEQFSAQL
VSMKHKLTQMDWAMSGDASLLEGKPGFALDFNYFVEDNTVVIDEADAREQ
QG*
back to top

mRNA from alignment at H-elongata_contig88013:969..2153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88013.16329.1 ID=mRNA_H-elongata_contig88013.16329.1|Name=mRNA_H-elongata_contig88013.16329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-elongata_contig88013:969..2153+ (Himanthalia elongata Himel1 dioecious)
ATGCGACAGACGCAGCTCTTCATGGAGGAGGTTCGACAGCAGCTTCTCTT
CCCCCAGATCCGATCATATCTGAAGCTCTACACGACCATTGGGCTGGACA
AGATCGCCCGATTCAACGATATGGACGAGGAGCAGTTTAGCGCGCAGCTT
GTGTCCATGAAGCACAAGCTCACGCAGGTAAGCTTGCGTAGCTTGTGATG
TGCCCCACCGCGTTGGAAGAACCGAACCATTTTCGAGGGGGGGGGATATT
GAATTTTTATCGTTGGGGAGTTTTTTGTCCATATAGTATATAGTTTTCAA
TATCTATCCCGATGTATCATAATTTATCTATCTAGTTAAGTAACTTTCTG
ACGATGACGATGGGGCCCTGGAACTTGCTAGCTTTATCGATCCCGCCTAT
CGTAGCGTTGCCCATTCATCATCCATTGTGCTACCTGTGATTCTAAGGGG
TCTATCTATCAACCCATACATCCCTCCCCGGTATGTTAACGCCTACTTAT
ATTAATATGAAAACTAATGCTGCTATTACTATTACTATAACTAATACGAT
TATCCATCCATTATGGCCATAAAGGGCCTCTCAATACATGCATCTATCCC
CGTACGGTTAACGCCTACCTATATTAGATTTTTATGGCGACCGTTGCCCA
GTCGATGCAAGTTATTAGCACATTAACATTGACAGCCCTACTACAACTTG
TCGACCAATGGTTAAAGTTCGCTCATTTCCGTTCTGCTGTTTTAGAGAAC
CGTCCCAAGGAGAATGAAATTAGAGAACGTCTCGACCTCAGTACTACGTA
CTTCATGCTTCGTTGTTATTTTTTTCATGTGATTCCCAATTGTACTTGTA
ATAGAGAAGAGCTAATGAACGGACTCGCTATATTCTTTGATTACAGTTTT
ACCACGGCCTGATCAGTGATCACATAATATTTTAGAACGGTCGCCAGCAT
GTCCCATCCCACCATAGTATGGTATGGTATGGTATGGTATCGTTCATGGA
CACAGCGGTCAGCGTCCAACATGCCCCATAATGTTATGTATGTACCGCTC
CAGATGGACTGGGCAATGTCGGGAGACGCATCGTTGCTCGAGGGCAAGCC
GGGATTCGCGCTGGACTTCAACTATTTCGTGGAGGACAACACCGTGGTGA
TCGATGAAGCGGATGCACGGGAGCAGCAGGGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig88013:969..2153+

>mRNA_H-elongata_contig88013.16329.1 ID=mRNA_H-elongata_contig88013.16329.1|Name=mRNA_H-elongata_contig88013.16329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig88013:969..2153+ (Himanthalia elongata Himel1 dioecious)
ATGCGACAGACGCAGCTCTTCATGGAGGAGGTTCGACAGCAGCTTCTCTT
CCCCCAGATCCGATCATATCTGAAGCTCTACACGACCATTGGGCTGGACA
AGATCGCCCGATTCAACGATATGGACGAGGAGCAGTTTAGCGCGCAGCTT
GTGTCCATGAAGCACAAGCTCACGCAGATGCGACAGACGCAGCTCTTCAT
GGAGGAGGTTCGACAGCAGCTTCTCTTCCCCCAGATCCGATCATATCTGA
AGCTCTACACGACCATTGGGCTGGACAAGATCGCCCGATTCAACGATATG
GACGAGGAGCAGTTTAGCGCGCAGCTTGTGTCCATGAAGCACAAGCTCAC
GCAGATGGACTGGGCAATGTCGGGAGACGCATCGTTGCTCGAGGGCAAGC
CGGGATTCGCGCTGGACTTCAACTATTTCGTGGAGGACAACACCGTGGTG
ATCGATGAAGCGGATGCACGGGAGCAGCAGGGGTAAATGGACTGGGCAAT
GTCGGGAGACGCATCGTTGCTCGAGGGCAAGCCGGGATTCGCGCTGGACT
TCAACTATTTCGTGGAGGACAACACCGTGGTGATCGATGAAGCGGATGCA
CGGGAGCAGCAGGGGTAA
back to top