mRNA_H-elongata_contig88004.16328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88004.16328.1
Unique NamemRNA_H-elongata_contig88004.16328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88004.16328.1 vs. uniprot
Match: A0A6H5KMD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMD6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.580e-34
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    1 QILYGIFLPSLLMVNVAKTCVSQPLASLLPIPVFAAVQVVVGIIATTAGMRLLNIDSNTENGRTTKVCGIFQNSAILPLIFMNALFRGSPEKLTQGIAYVRY 306
            +I+YGIFLPSLLMVNVAKTCVSQ +ASLLPIP FA +QV +G+  +   MRLL I+ +TE GR  KVC  FQNS ILPLIF+NA+FRGSPE L++G+AY  +
Sbjct:  176 KIVYGIFLPSLLMVNVAKTCVSQSVASLLPIPAFAGIQVALGLAISEVAMRLLRINPDTEAGREAKVCMAFQNSGILPLIFLNAMFRGSPELLSRGVAYASF 277
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BLAST of mRNA_H-elongata_contig88004.16328.1 vs. uniprot
Match: A0A836CLT3_9STRA (Auxin efflux carrier n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.310e-25
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 QILYGIFLPSLLMVNVAKTCVSQPLASLLPIPVFAAVQVVVGIIATTAGMRLLNIDSNTENGRTTKVCGIFQNSAILPLIFMNALFRGSPEK--LTQGIAYVRY 306
            QI+Y IFLPSLL+VNVA+T +SQPL++LLPIP+FA  Q+ +G       M++L I+  TE GR  +VC  F NS ILPL+F+NALFR  P+   L + IAY+ +
Sbjct:   47 QIVYNIFLPSLLLVNVAETAISQPLSTLLPIPLFAWAQIFIGYKIARLTMKVLRIEPTTEEGREVQVCSAFGNSGILPLLFVNALFRAHPDPTVLPRAIAYISF 150
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BLAST of mRNA_H-elongata_contig88004.16328.1 vs. uniprot
Match: A0A7S3XRL6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL6_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 8.640e-16
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   10 YGIFLPSLLMVNVAKTCVSQPLASLLPIPVFAAVQVVVGIIATTAGMRLLNIDSNTENGRTTKVCGIFQNSAILPLIFMNALFRGSPE 273
            Y +FLP+LL+VNVA T  SQ + +LLP+P+ A +Q+++ +       +LL I+  +  GR   VC  F N+ +LP++F+NALFRG P+
Sbjct:   27 YSLFLPALLLVNVANTVASQSILTLLPLPLMAMLQIILVMGCANLLAKLLGIERASYEGRVFNVCSSFGNAGLLPMLFVNALFRGHPD 114
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BLAST of mRNA_H-elongata_contig88004.16328.1 vs. uniprot
Match: W7TA92_9STRA (Auxin efflux carrier-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA92_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.450e-11
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    1 QILYGIFLPSLLMVNVAKTCVSQPLASLLPIPVFAAVQVVVGIIATTAGMRLLNIDSNTENGRTTKVCGIFQNSAILPLIFMNALFRGSPEK--LTQGIAYVRY 306
             I+Y I LPSLL+VNVAKT  + PL +LLP+P+F  +Q+++          L+  D N+  GR  +V   F N  + P++F   L R  P+   L   I+Y+ +
Sbjct:  148 SIVYHILLPSLLVVNVAKTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISF 251
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BLAST of mRNA_H-elongata_contig88004.16328.1 vs. uniprot
Match: A0A4D9CQA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQA1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.770e-11
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    1 QILYGIFLPSLLMVNVAKTCVSQPLASLLPIPVFAAVQVVVGIIATTAGMRLLNIDSNTENGRTTKVCGIFQNSAILPLIFMNALFRGSPEK--LTQGIAYVRY 306
             I+Y I LPSLL+VNVAKT  + PL +LLP+P+F  +Q+++          L+  D N+  GR  +V   F N  + P++F   L R  P+   L   I+Y+ +
Sbjct:   85 SIVYHILLPSLLVVNVAKTVYTTPLRTLLPLPLFGTMQILLCSCIAWVVTFLMGADVNSAKGRQLRVLQTFGNGGVAPILFATVLLRNHPDPSVLPLAISYISF 188
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BLAST of mRNA_H-elongata_contig88004.16328.1 vs. uniprot
Match: A0A7S2UVM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVM5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 6.050e-5
Identity = 22/71 (30.99%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  100 FAAVQVVVGIIATTAGMRLLNIDSNTENGRTTKVCGIFQNSAILPLIFMNALFRGSPEK--LTQGIAYVRY 306
            F  + + V ++A+    R++ +D+ ++ GR    C  F N  ILPL+F++ALFR  P+   L + ++Y+ +
Sbjct:    2 FPIIAISVALLASNLLARVMKMDTKSQEGRNFLACCTFSNCGILPLLFVDALFRNHPDPSLLPKAVSYISF 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88004.16328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KMD6_9PHAE1.580e-3465.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLT3_9STRA5.310e-2552.88Auxin efflux carrier n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3XRL6_HETAK8.640e-1643.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TA92_9STRA8.450e-1136.54Auxin efflux carrier-like protein n=2 Tax=Nannochl... [more]
A0A4D9CQA1_9STRA8.770e-1136.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2UVM5_9STRA6.050e-530.99Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88004contigH-elongata_contig88004:1225..2488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5e-29
Seed eggNOG ortholog2880.D7G8U0
KEGG koko:K07088
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931281.2028496-CDS-H-elongata_contig88004:1224..13321622931281.2028496-CDS-H-elongata_contig88004:1224..1332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88004 1225..1332 -
1691679771.7418647-CDS-H-elongata_contig88004:1224..13321691679771.7418647-CDS-H-elongata_contig88004:1224..1332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88004 1225..1332 -
1622931281.2260954-CDS-H-elongata_contig88004:2290..24881622931281.2260954-CDS-H-elongata_contig88004:2290..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88004 2291..2488 -
1691679771.7558317-CDS-H-elongata_contig88004:2290..24881691679771.7558317-CDS-H-elongata_contig88004:2290..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88004 2291..2488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88004.16328.1prot_H-elongata_contig88004.16328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88004 1225..2488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88004.16328.1

>prot_H-elongata_contig88004.16328.1 ID=prot_H-elongata_contig88004.16328.1|Name=mRNA_H-elongata_contig88004.16328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
QILYGIFLPSLLMVNVAKTCVSQPLASLLPIPVFAAVQVVVGIIATTAGM
RLLNIDSNTENGRTTKVCGIFQNSAILPLIFMNALFRGSPEKLTQGIAYV
RY
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mRNA from alignment at H-elongata_contig88004:1225..2488-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88004.16328.1 ID=mRNA_H-elongata_contig88004.16328.1|Name=mRNA_H-elongata_contig88004.16328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1264bp|location=Sequence derived from alignment at H-elongata_contig88004:1225..2488- (Himanthalia elongata Himel1 dioecious)
CAGATCTTGTACGGCATTTTCCTGCCCTCACTGCTCATGGTGAACGTAGC
GAAGACTTGCGTCAGCCAGCCTTTGGCCTCGCTGCTGCCGATCCCAGTGT
TTGCCGCCGTTCAGGTTGTGGTGGGAATAATAGCGACCACGGCAGGCATG
CGGTTGCTAAATATCGACTCTAATACCGAGAATGGGCGTACCACGAAGGT
GCGCGTATTTCCGGTGTCTCTTGTGTGAATTTGCTGGTTGGCTGACCGGT
TGGCTGTAGCCGTATGCTCCGCCCCTCGTCTGCATGTCTGTCTGTTTCCG
GCTGCCTCTTTTTACCGCCCACTTGCCTCTCTGGCCGTTTCAATTCTAAC
GAACGAATCGCAACACGCGTCACGACCCCCGTGGGATACCCTATCACACC
ACAGCCCCCCCCACCCCCCCCCCCCACGGTTTGAAAATGCCTTTGTTTGA
TATTATATTACAATTTGGGTGCGCGGGTGTTTCTAATATCATCCTCTTTT
GTCCATACATGCCGCTGAAGATCCCACATTACATTCACAACGTATTTCTG
GAATGTGTGTGCTATTACGGTACTGCCGTGCGCATCAACCCCAAGTATCA
AAGTATTAGAGTAAAGTTCATCCAGCGGTAGCGTGTCCCTTCCATCCATC
CGTAGGGCACTCGCCCCTTCTTTGTTTGAGATTCCCGACAGCGGTCGGTA
TATATATGATATGATATATGTGTTGTACAGCATGTTGCCACTGTTTCCCC
CCTGCGACCCCGGATCGGGTGTCGTCGTTATCTTTTATCCGCCTCCCGCC
ATCCACCGCCTTCGCGCCCGCACCGGGACAACGTCCCTTTTTTTTTTAAT
TATTGCGTGCCACCTTGGTGTACCTGTCGCCGCTTTTTATGCCTTCTCTG
TTTGCCTATTATCCTCCCCCCCGCGCTCTCCCCGTTACGTCGCTTCGGAT
CTCGTCATCGCTTTTACGCCTCCCGCACGGCCTCCACGCGAGCACCATCT
CTACACATCAACCCCCTATGAGCCCCTCTGTGGTGTAATCTGTGTACCGT
TTTGTTGTGTACCCTGTTATGATATATAACCTTTTTGGTCCCTTTGTTCT
CCTTCTTAGCCCCTACGATAACAGTACCGCCCAAACAACGCGGGTTGTTG
ACTCAGGTGTGCGGTATCTTCCAGAACAGTGCGATCCTCCCTCTGATTTT
CATGAACGCTTTGTTCCGGGGGAGCCCTGAGAAGCTCACGCAAGGCATCG
CCTACGTTAGGTAT
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Coding sequence (CDS) from alignment at H-elongata_contig88004:1225..2488-

>mRNA_H-elongata_contig88004.16328.1 ID=mRNA_H-elongata_contig88004.16328.1|Name=mRNA_H-elongata_contig88004.16328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig88004:1225..2488- (Himanthalia elongata Himel1 dioecious)
CAGATCTTGTACGGCATTTTCCTGCCCTCACTGCTCATGGTGAACGTAGC
GAAGACTTGCGTCAGCCAGCCTTTGGCCTCGCTGCTGCCGATCCCAGTGT
TTGCCGCCGTTCAGGTTGTGGTGGGAATAATAGCGACCACGGCAGGCATG
CGGTTGCTAAATATCGACTCTAATACCGAGAATGGGCGTACCACGAAGCA
GATCTTGTACGGCATTTTCCTGCCCTCACTGCTCATGGTGAACGTAGCGA
AGACTTGCGTCAGCCAGCCTTTGGCCTCGCTGCTGCCGATCCCAGTGTTT
GCCGCCGTTCAGGTTGTGGTGGGAATAATAGCGACCACGGCAGGCATGCG
GTTGCTAAATATCGACTCTAATACCGAGAATGGGCGTACCACGAAGGTGT
GCGGTATCTTCCAGAACAGTGCGATCCTCCCTCTGATTTTCATGAACGCT
TTGTTCCGGGGGAGCCCTGAGAAGCTCACGCAAGGCATCGCCTACGTTAG
GTATGTGTGCGGTATCTTCCAGAACAGTGCGATCCTCCCTCTGATTTTCA
TGAACGCTTTGTTCCGGGGGAGCCCTGAGAAGCTCACGCAAGGCATCGCC
TACGTTAGGTAT
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