mRNA_H-elongata_contig87954.16327.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE) HSP 1 Score: 189 bits (480), Expect = 2.440e-53 Identity = 86/152 (56.58%), Postives = 112/152 (73.68%), Query Frame = 1
Query: 814 LPTPDVDGCVAGNDQACHTQFVEFVEANLSSVDDDETLSRAFAFKIVSKVGERYCSHNEEPAALDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQACFDGAVALNARGGGVQLPRAPCFTEACRALWPGSGEM 1269
+PTPDV+GC AGN ACH Q V + AN + +D TL RAFAF++ +KVG YC H+ P + SM +A + AAA+HPGLCGV HA +I+ V+T+DV ++ +T ANK+RNQAC+DGA+A+NARG GVQL RA CFT A RA+WPG+ EM
Sbjct: 1 MPTPDVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHARRAVWPGNEEM 152
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE) HSP 1 Score: 182 bits (463), Expect = 1.490e-50 Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = 1
Query: 811 ELPTPDVDGCVAGNDQACHTQFVEFVEANLSSVDDDETLSRAFAFKIVSKVGERYCSHNEEPAALDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQACFDGAVALNARGGGVQLPRAPCFTEACRALWPGSGEM 1269
++PTPDV+G AGN ACH Q V + AN + + TL RAFAF++ +KVG YC H+ P + SM +A + AAA+HPGLCGV HA +I+ V+T+DV ++ T ANK+RNQAC+DG +A+N RG GVQL RA CFT ACRA+WPG+ EM
Sbjct: 2 DMPTPDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDVTSRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEM 154
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE) HSP 1 Score: 182 bits (463), Expect = 6.030e-50 Identity = 83/152 (54.61%), Postives = 110/152 (72.37%), Query Frame = 1
Query: 814 LPTPDVDGCVAGNDQACHTQFVEFVEANLSSVDDDETLSRAFAFKIVSKVGERYCSHNEEPAALDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQACFDGAVALNARGGGVQLPRAPCFTEACRALWPGSGEM 1269
+P P+V+GC AGN ACH Q V + AN + +D TL RAFAF++ +KVG YC H+ P + SM +A + AAA+HPGLCGV HA +I+ V+T+DV ++ +T ANK+RNQAC+DGA+A+NA G GVQL RA CFT A RA+WPG+ EM
Sbjct: 70 MPPPNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGSTAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHARRAVWPGNEEM 221
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE) HSP 1 Score: 176 bits (447), Expect = 1.750e-47 Identity = 83/132 (62.88%), Postives = 100/132 (75.76%), Query Frame = 1
Query: 898 LSSVDDDETLSRAFAFKIVSKVGERYCSHNEEPAALDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQACFDGAVALNARGGGVQLPRAPCFTEACRALWPGSGEMPPCVVEAF 1293
L + +++ + RAFAF++ SKVG RYCSH P L+ M+ A ++ AAA HPGLCGV HA +I+ V+TQDV KW TT NKYRNQAC++GA A+NARG GVQLPRA CFT ACRAL PGSGEM P VVEAF
Sbjct: 100 LPAGEENTDVGRAFAFEVASKVGARYCSHVSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAF 231
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE) HSP 1 Score: 132 bits (331), Expect = 5.150e-33 Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 1003 LDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQACFDGAVALNARGGGVQLPRAPCFTEACRALWPGSGEMPPCVVEAFS 1296
+ SM A ++AAA+HPGLCGV HA +I+ VK QDVL + +T ANKYRNQAC+DG +A+NARG GVQL R CFT CRALWPGSGE VVEAFS
Sbjct: 1 MPSMKAAAAKVAAAEHPGLCGVYHAHIIAAVKIQDVLARSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAFS 98
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE) HSP 1 Score: 131 bits (330), Expect = 8.230e-32 Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 805 MAELPTPDVDGCVAGNDQACHTQFVEFVEANLSSVDDDETLSRAFAFKIVSKVGERYCSHNEEPAALDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQ 1155
M +LPTPD++ V GN QAC+ Q V+ + A L + +++ + RAFAF++ SKVG RYCSH P L+ M+ A ++ AAA HPGLCGV HA +I+ V+TQDV KW TT NKYRNQ
Sbjct: 1 MEDLPTPDIEAYVGGNQQACYVQLVDVLSA-LPAGEENTDVGRAFAFEVPSKVGARYCSHLSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQ 116
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE) HSP 1 Score: 123 bits (309), Expect = 7.150e-30 Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 1
Query: 1003 LDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQACFDGAVALNARGGGVQLPRAPCFTEACRALWPGSGEMPPCVVEA 1290
+ SM +A + AAA+HPGLCGV HA +I+ V+T+DV ++ +T ANK+RNQAC+DGA+A+NARG GVQL RA CFT A RA+WPG+ EM VVEA
Sbjct: 1 MPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5KQB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB2_9PHAE) HSP 1 Score: 124 bits (310), Expect = 3.990e-29 Identity = 65/132 (49.24%), Postives = 84/132 (63.64%), Query Frame = 1
Query: 811 ELPTPDVDGCVAGNDQACHTQFVEFVEANLSSVDD-DETLSRAFAFKIVSKVGERYCSHNEEPAALDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQACFDGAVALNARGGGV 1203
ELP PDV+ AGN + T V + N S D + L+RAFAF+I + VG YC H EP + SM + ++AAA+HPGLCGV HA +++ VKTQDV + +T NKYRNQAC DGA+ +NARG G
Sbjct: 2 ELPAPDVEAYKAGNTRPA-TIMVSLIANNPPSEDGTNNNLARAFAFEIAAAVGGEYCDHLTEPEPMPSMAPSAAKVAAAEHPGLCGVYHAHILAAVKTQDVQARSGSTAGNKYRNQACCDGAITMNARGRGA 132
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5KUN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN4_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.310e-9 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 1003 LDSMTVANKRLAAAKHPGLCGVDHAGVISQVKTQDVLNKWETTTANKYRNQ 1155
+ SM VA ++AAA+HPGLCGV HA +I+ VK+QDVL + +T ANKYRNQ
Sbjct: 1 MPSMKVAAAKVAAAEHPGLCGVYHAHIIAVVKSQDVLARSGSTAANKYRNQ 51
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Match: A0A6H5K1G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G2_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 1.950e-7 Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 1141 KYRNQACFDGAVALNARGGGVQLPRAPCFTEACRALWPGSGEMPPCVVEA 1290
++ +A FD ++ +NARG G+Q+ R+ CFT+ACRA+WPG +P + +A
Sbjct: 25 RFPTKASFDTSIQMNARGRGMQITRSDCFTQACRAVWPGDEPVPAAISDA 74 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87954.16327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87954.16327.1 >prot_H-elongata_contig87954.16327.1 ID=prot_H-elongata_contig87954.16327.1|Name=mRNA_H-elongata_contig87954.16327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp MAELPTPDVDGCVAGNDQACHTQFVEFVEANLSSVDDDETLSRAFAFKIVback to top mRNA from alignment at H-elongata_contig87954:2..2308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87954.16327.1 ID=mRNA_H-elongata_contig87954.16327.1|Name=mRNA_H-elongata_contig87954.16327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2307bp|location=Sequence derived from alignment at H-elongata_contig87954:2..2308- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87954:2..2308- >mRNA_H-elongata_contig87954.16327.1 ID=mRNA_H-elongata_contig87954.16327.1|Name=mRNA_H-elongata_contig87954.16327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig87954:2..2308- (Himanthalia elongata Himel1 dioecious)back to top |