mRNA_H-elongata_contig87923.16324.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87923.16324.1
Unique NamemRNA_H-elongata_contig87923.16324.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: D8LDY9_ECTSI (Channel voltage activated chloride channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY9_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.160e-64
Identity = 93/102 (91.18%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:   28 MQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            MQYVLPLMLTLMAARWVGNVFNEGLYD++IHGNKLPFLEDECP VA++NDMTASQAMSRRVRCLRP+ERAGAVFDTL+AC+HDCFPVVDD+GGDVLVGTILR
Sbjct:    1 MQYVLPLMLTLMAARWVGNVFNEGLYDMHIHGNKLPFLEDECPSVARQNDMTASQAMSRRVRCLRPLERAGAVFDTLNACQHDCFPVVDDEGGDVLVGTILR 102
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A836CAG3_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG3_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.400e-46
Identity = 79/111 (71.17%), Postives = 91/111 (81.98%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYVLPLMLTLMAARW GNVFNEGLYDI+I   +LPFLEDE P +A K ++TA Q M+  V+CLRP+ER G V+D L   EHDCFPVVD Q G+VL+GT+LR
Sbjct:  443 VILLEATGDMQYVLPLMLTLMAARWTGNVFNEGLYDIHIRLKRLPFLEDELPALAAKGEVTAGQIMTTTVKCLRPIERVGYVYDALRNTEHDCFPVVDTQTGNVLMGTVLR 553
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A7S1D5H2_CYCTE (Chloride channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 148 bits (373), Expect = 2.730e-40
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYVLPLMLTLMAAR+ GNVFNEGLYDI+I    +PFLE E P +A+++++ A Q MS  V+CLRP+ERAG V+D L +C H  FP+VD   G  L GT  R
Sbjct:  184 VILLEATGDMQYVLPLMLTLMAARFTGNVFNEGLYDIHIKLKNIPFLEPEVPSIAERHEIVAGQVMSAEVKCLRPVERAGVVYDLLRSCSHGTFPIVDTASGGTLYGTASR 294
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A7S2YMG2_9STRA (Chloride channel protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMG2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.750e-40
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYVLPLM+TLMAAR+ GNVFNEGLYDI+IH   +PFLE + P VA++N++ + Q MS  V+CLRP+ERAG V+D L +C H  FP+VD   G  L GT  R
Sbjct:  482 VILLEATGDMQYVLPLMITLMAARFTGNVFNEGLYDIHIHLKHIPFLEPDVPSVAERNEIVSGQVMSTEVKCLRPVERAGVVYDLLRSCSHGTFPIVDTASGGTLYGTASR 592
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A7S2XUS9_9STRA (Chloride channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.320e-39
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYV+PLM+TLMAARWVGNVF   LY I+IH  +LP+LE++    A+ NDM A+Q M + VRCLRP+E+ G ++D L++ +H CFPVVD   G VLVG++LR
Sbjct:  373 VILLEATGDMQYVVPLMITLMAARWVGNVFTPSLYHIHIHLKRLPYLEEDVDRPARMNDMIANQVMCKDVRCLRPVEKVGVIYDLLTSTQHHCFPVVDQGRGGVLVGSVLR 483
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A7S0UJS8_9STRA (Chloride channel protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJS8_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.330e-39
Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYVLPLM+ LM+AR+ GNVFNEGLYDI+IH   +PF+E E P +A++N++ A Q MS  V+CLRP+ERAG V+D L +C+H  FP+VD   G  L GT  R
Sbjct:  488 VILLEATGDMQYVLPLMIVLMSARFTGNVFNEGLYDIHIHLKHIPFMEPEVPTIAERNEIVAGQVMSAEVKCLRPVERAGVVYDLLRSCQHGTFPIVDTASGGTLYGTASR 598
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A1Z5JAK4_FISSO (Chloride channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 147 bits (372), Expect = 5.620e-39
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYVLPLMLTLMAAR+ GNVFNEGLYDI+IH   +PFLE + P +A+++++ A Q MS  V+CLRP+ERAG V+D L  C H  FP+VD   G  L GT  R
Sbjct:  611 VILLEATGDMQYVLPLMLTLMAARFTGNVFNEGLYDIHIHLKNIPFLEPDVPPIAERSEIVAGQVMSTEVKCLRPVERAGVVYDLLQQCGHGTFPIVDMASGGTLYGTASR 721
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A1E7FXI3_9STRA (Chloride channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.010e-39
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQY LPLM+ LM+AR+ GNVFNEGLYDI+IH   +PF+E E P VA++N++ A Q MS  V+CLRP+ERAG V+D L +C+H  FP+VD   G  L GT  R
Sbjct:  544 VILLEATGDMQYTLPLMIVLMSARFTGNVFNEGLYDIHIHLKHIPFMEPEVPPVAERNEIVAGQVMSAEVKCLRPVERAGVVYDLLRSCQHGTFPIVDTASGGTLYGTASR 654
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BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A7R9ZRT7_9STRA (Chloride channel protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRT7_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.990e-38
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYVLPLML LM+AR+ GNVFNEGLYDI+IH   +PF+E E P +A+++++ A Q MS +V+CLRP+ERAG V+  L    H  FP+VD   G  L GT  R
Sbjct:   67 VILLEATGDMQYVLPLMLVLMSARFTGNVFNEGLYDIHIHLKHIPFMEPEVPPIAERHEIVAGQVMSTKVKCLRPVERAGLVYQLLKESSHGTFPIVDAASGGTLYGTASR 177
[Close]
BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Match: A0A7S2CPI8_9STRA (Chloride channel protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPI8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.430e-37
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 VILLEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKNDMTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTILR 333
            VILLEATGDMQYVLPLML LMAAR+VGN+FN GLYDI+I   ++PFLE + P  A   ++TA   MS     ++PM R GA+   LS+C+HDCFPVVD Q GD+LVGTILR
Sbjct:  258 VILLEATGDMQYVLPLMLALMAARFVGNMFNAGLYDIHIKLKRIPFLEGDLPIDALDAELTAGHVMSSGCVTMQPMMRVGALQSILSSCDHDCFPVVDPQRGDILVGTILR 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87923.16324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDY9_ECTSI1.160e-6491.18Channel voltage activated chloride channel (Partia... [more]
A0A836CAG3_9STRA6.400e-4671.17Chloride channel protein n=1 Tax=Tribonema minus T... [more]
A0A7S1D5H2_CYCTE2.730e-4063.06Chloride channel protein n=1 Tax=Cyclophora tenuis... [more]
A0A7S2YMG2_9STRA4.750e-4063.06Chloride channel protein n=1 Tax=Amphiprora paludo... [more]
A0A7S2XUS9_9STRA2.320e-3961.26Chloride channel protein n=1 Tax=Fibrocapsa japoni... [more]
A0A7S0UJS8_9STRA2.330e-3961.26Chloride channel protein n=1 Tax=Pseudo-nitzschia ... [more]
A0A1Z5JAK4_FISSO5.620e-3963.06Chloride channel protein n=2 Tax=Fistulifera solar... [more]
A0A1E7FXI3_9STRA7.010e-3961.26Chloride channel protein n=1 Tax=Fragilariopsis cy... [more]
A0A7R9ZRT7_9STRA1.990e-3859.46Chloride channel protein n=1 Tax=Craspedostauros a... [more]
A0A7S2CPI8_9STRA6.430e-3763.06Chloride channel protein n=2 Tax=Dictyocha speculu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87923contigH-elongata_contig87923:812..1147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue3.1e-50
Seed eggNOG ortholog2880.D8LDY9
Preferred nameCLCN7
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
EggNOG free text desc.Chloride Channel
EggNOG OGsCOG0038@1,KOG0474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionChloride channel, core
Ec32 orthologEc-23_003260.1
Exons1
Model size336
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931280.8852944-CDS-H-elongata_contig87923:811..11201622931280.8852944-CDS-H-elongata_contig87923:811..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87923 812..1120 -
1691679771.6494553-CDS-H-elongata_contig87923:811..11201691679771.6494553-CDS-H-elongata_contig87923:811..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87923 812..1120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931280.8993635-UTR-H-elongata_contig87923:1120..11471622931280.8993635-UTR-H-elongata_contig87923:1120..1147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87923 1121..1147 -
1691679771.6596198-UTR-H-elongata_contig87923:1120..11471691679771.6596198-UTR-H-elongata_contig87923:1120..1147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87923 1121..1147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87923.16324.1prot_H-elongata_contig87923.16324.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87923 812..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87923.16324.1

>prot_H-elongata_contig87923.16324.1 ID=prot_H-elongata_contig87923.16324.1|Name=mRNA_H-elongata_contig87923.16324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MQYVLPLMLTLMAARWVGNVFNEGLYDIYIHGNKLPFLEDECPGVAKKND
MTASQAMSRRVRCLRPMERAGAVFDTLSACEHDCFPVVDDQGGDVLVGTI
LR*
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mRNA from alignment at H-elongata_contig87923:812..1147-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87923.16324.1 ID=mRNA_H-elongata_contig87923.16324.1|Name=mRNA_H-elongata_contig87923.16324.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig87923:812..1147- (Himanthalia elongata Himel1 dioecious)
GTGATTCTGCTTGAAGCCACGGGCGACATGCAGTACGTTCTACCGCTGAT
GCTGACCCTCATGGCCGCTCGCTGGGTGGGGAACGTGTTCAACGAGGGCC
TCTACGACATCTACATTCACGGAAACAAGCTGCCCTTTCTCGAGGATGAG
TGCCCCGGGGTGGCGAAGAAGAATGATATGACGGCGTCGCAGGCTATGTC
CAGGAGGGTGCGGTGCCTGCGGCCCATGGAGAGGGCAGGGGCTGTGTTTG
ATACCCTTAGCGCCTGCGAGCACGACTGCTTCCCGGTCGTGGACGACCAG
GGCGGGGACGTGTTGGTGGGCACCATACTGCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig87923:812..1147-

>mRNA_H-elongata_contig87923.16324.1 ID=mRNA_H-elongata_contig87923.16324.1|Name=mRNA_H-elongata_contig87923.16324.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig87923:812..1147- (Himanthalia elongata Himel1 dioecious)
ATGCAGTACGTTCTACCGCTGATGCTGACCCTCATGGCCGCTCGCTGGGT
GGGGAACGTGTTCAACGAGGGCCTCTACGACATCTACATTCACGGAAACA
AGCTGCCCTTTCTCGAGGATGAGTGCCCCGGGGTGGCGAAGAAGAATGAT
ATGACGGCGTCGCAGGCTATGTCCAGGAGGGTGCGGTGCCTGCGGCCCAT
GGAGAGGGCAGGGGCTGTGTTTGATACCCTTAGCGCCTGCGAGCACGACT
GCTTCCCGGTCGTGGACGACCAGGGCGGGGACGTGTTGGTGGGCACCATA
CTGCGGTGAATGCAGTACGTTCTACCGCTGATGCTGACCCTCATGGCCGC
TCGCTGGGTGGGGAACGTGTTCAACGAGGGCCTCTACGACATCTACATTC
ACGGAAACAAGCTGCCCTTTCTCGAGGATGAGTGCCCCGGGGTGGCGAAG
AAGAATGATATGACGGCGTCGCAGGCTATGTCCAGGAGGGTGCGGTGCCT
GCGGCCCATGGAGAGGGCAGGGGCTGTGTTTGATACCCTTAGCGCCTGCG
AGCACGACTGCTTCCCGGTCGTGGACGACCAGGGCGGGGACGTGTTGGTG
GGCACCATACTGCGGTGA
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