mRNA_H-elongata_contig87913.16322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87913.16322.1
Unique NamemRNA_H-elongata_contig87913.16322.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 66.6 bits (161), Expect = 1.260e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  142 FPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            FPN+ K +++   +P SSVECERGFS QN IK+KDRN L    L++LMR+SL
Sbjct:   86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: UPI001C155DC1 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C155DC1)

HSP 1 Score: 65.1 bits (157), Expect = 2.730e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  142 FPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            FPN+ K ++L   +P SSVECERGFS QN IK+K RN L  + L+ LMRISL
Sbjct:   56 FPNIIKLIQLVYCIPFSSVECERGFSRQNQIKTKSRNSLTTDTLDRLMRISL 107          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX)

HSP 1 Score: 67.0 bits (162), Expect = 7.800e-11
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   13 QEHWRVLQGLLKGVSRRKHRSEIFQKLWVRFWRTVHGK-PGGAHFPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRIS 294
            Q  WR+L+ L+KG        +   K +   W  +  K P  + F N++   ++ +VLP S+ +CERGFSAQN IKSK RN L +  +E L+RIS
Sbjct:  519 QTEWRMLKILIKG--------QFMDKSYSGLWEVMLSKEPYCSDFQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 63.5 bits (153), Expect = 1.280e-9
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  142 FPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            FPN+ K +++   +P SSVECERGFS QN IK+KDRN L    L++LM ISL
Sbjct:  544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 63.5 bits (153), Expect = 1.330e-9
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  142 FPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            FPN+ K +++   +P SSVECERGFS QN IK+KDRN L    L++LM ISL
Sbjct:  614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: A0A2Z6RJ54_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ54_9GLOM)

HSP 1 Score: 61.6 bits (148), Expect = 3.320e-9
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  142 FPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            F N+ K ++L   +P SSVECERGFS QN IK+K+RN L  + L+ LMRISL
Sbjct:  171 FLNIIKLIQLIYCIPFSSVECERGFSRQNQIKTKNRNSLTTDTLDRLMRISL 222          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D)

HSP 1 Score: 57.0 bits (136), Expect = 3.160e-8
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   16 EHWRVLQGLLKGVSRRKHRSEIFQKLWVRFWRTVHGKPGGAHFPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            E W+ L+ L+      K  S++++ L  +        P    + N+ + V + +VLP S+ +CERGFSAQN IK+  R+ L +   E LMRISL
Sbjct:    2 EEWQSLKMLISENFPDKSYSDLWELLLTK-------DPYKTDYRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: A0A1X7TW65_AMPQE (TTF-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TW65_AMPQE)

HSP 1 Score: 58.9 bits (141), Expect = 5.480e-8
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  142 FPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            +PN+    ++ +V P SSV+CERGFS QNHIKSK RNRL    L++L+RI L
Sbjct:  657 YPNLSILAQIVLVFPASSVDCERGFSTQNHIKSKLRNRLGHLHLDMLLRIRL 708          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: A0A8H3QWN6_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QWN6_9GLOM)

HSP 1 Score: 57.4 bits (137), Expect = 8.020e-8
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query:  142 FPNVYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL 297
            F N+ K +++   +P SSVECE GFS QN IK+KDRN L    L+LLM + L
Sbjct:  128 FLNIIKLIQIVYCIPFSSVECEHGFSRQNKIKTKDRNSLATNMLDLLMHVFL 179          
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Match: A0A535FQV7_9CHLR (HAT transposon family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FQV7_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 1.800e-7
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  157 KFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRIS 294
            +  ++  VLP +SVECERGFS  N IK+ DRNRL  E LE LMRIS
Sbjct:    8 RLCQMVAVLPATSVECERGFSNLNRIKTDDRNRLQPEHLEYLMRIS 53          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87913.16322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H3LT90_9GLOM1.260e-1157.69Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI001C155DC12.730e-1159.62Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A3B1J4P0_ASTMX7.800e-1140.00TTF-type domain-containing protein n=1 Tax=Astyana... [more]
A0A015J8B3_RHIIW1.280e-957.69Uncharacterized protein n=13 Tax=Rhizophagus irreg... [more]
UPI001C19C3531.330e-957.69Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A2Z6RJ54_9GLOM3.320e-957.69Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI0011C0D78D3.160e-836.17zinc finger protein 862-like n=1 Tax=Sparus aurata... [more]
A0A1X7TW65_AMPQE5.480e-855.77TTF-type domain-containing protein n=1 Tax=Amphime... [more]
A0A8H3QWN6_9GLOM8.020e-851.92Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
A0A535FQV7_9CHLR1.800e-760.87HAT transposon family protein n=1 Tax=Chloroflexi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87913contigH-elongata_contig87913:1766..2062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931280.5679255-CDS-H-elongata_contig87913:1765..20621622931280.5679255-CDS-H-elongata_contig87913:1765..2062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87913 1766..2062 +
1691679771.5437813-CDS-H-elongata_contig87913:1765..20621691679771.5437813-CDS-H-elongata_contig87913:1765..2062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87913 1766..2062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87913.16322.1prot_H-elongata_contig87913.16322.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87913 1766..2062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87913.16322.1

>prot_H-elongata_contig87913.16322.1 ID=prot_H-elongata_contig87913.16322.1|Name=mRNA_H-elongata_contig87913.16322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MGQGQEHWRVLQGLLKGVSRRKHRSEIFQKLWVRFWRTVHGKPGGAHFPN
VYKFVKLYIVLPHSSVECERGFSAQNHIKSKDRNRLLIERLELLMRISL
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mRNA from alignment at H-elongata_contig87913:1766..2062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87913.16322.1 ID=mRNA_H-elongata_contig87913.16322.1|Name=mRNA_H-elongata_contig87913.16322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig87913:1766..2062+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCAGGGGCAGGAACACTGGAGGGTGCTGCAGGGTCTGTTGAAGGG GGTGAGCAGACGCAAGCACAGGAGTGAGATCTTCCAGAAGCTGTGGGTAC GCTTCTGGCGTACCGTCCATGGTAAGCCAGGAGGCGCGCACTTTCCCAAC GTCTACAAGTTTGTAAAGCTCTACATCGTGCTCCCACACTCTTCGGTTGA ATGCGAGCGAGGCTTCTCCGCGCAAAACCACATCAAGTCGAAAGACCGGA ACCGGCTGTTAATTGAAAGACTGGAACTGCTCATGCGCATATCGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig87913:1766..2062+

>mRNA_H-elongata_contig87913.16322.1 ID=mRNA_H-elongata_contig87913.16322.1|Name=mRNA_H-elongata_contig87913.16322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig87913:1766..2062+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCAGGGGCAGGAACACTGGAGGGTGCTGCAGGGTCTGTTGAAGGG
GGTGAGCAGACGCAAGCACAGGAGTGAGATCTTCCAGAAGCTGTGGGTAC
GCTTCTGGCGTACCGTCCATGGTAAGCCAGGAGGCGCGCACTTTCCCAAC
GTCTACAAGTTTGTAAAGCTCTACATCGTGCTCCCACACTCTTCGGTTGA
ATGCGAGCGAGGCTTCTCCGCGCAAAACCACATCAAGTCGAAAGACCGGA
ACCGGCTGTTAATTGAAAGACTGGAACTGCTCATGCGCATATCGTTGATG
GGGCAGGGGCAGGAACACTGGAGGGTGCTGCAGGGTCTGTTGAAGGGGGT
GAGCAGACGCAAGCACAGGAGTGAGATCTTCCAGAAGCTGTGGGTACGCT
TCTGGCGTACCGTCCATGGTAAGCCAGGAGGCGCGCACTTTCCCAACGTC
TACAAGTTTGTAAAGCTCTACATCGTGCTCCCACACTCTTCGGTTGAATG
CGAGCGAGGCTTCTCCGCGCAAAACCACATCAAGTCGAAAGACCGGAACC
GGCTGTTAATTGAAAGACTGGAACTGCTCATGCGCATATCGTTG
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