mRNA_H-elongata_contig8790.16321.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8790.16321.1
Unique NamemRNA_H-elongata_contig8790.16321.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A6H5KU51_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU51_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.420e-10
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 KLFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQ 147
            KL +GN+GD EAVL R   VV +SPVH+PARP E  RI+ A GWV TE+
Sbjct:  166 KLLIGNVGDGEAVLCRGDDVVHMSPVHDPARPCEHDRIIAANGWVTTER 214
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A812IIU8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812IIU8_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 3.780e-8
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 KLFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQAGAVR 162
            KLFV N GDC AVL R  K +R++  H P RPDE+QRI  A G V++   G  R
Sbjct:  244 KLFVANCGDCRAVLLRGRKAIRLTQDHKPERPDETQRIQQAGGIVISTPCGTHR 297
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A812WEE0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WEE0_SYMMI)

HSP 1 Score: 55.1 bits (131), Expect = 2.440e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 KLFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQAGAVR 162
            KLFV N GDC AVL R  K +R++  H P RPDE+ RI  A G V++   G  R
Sbjct:  243 KLFVANCGDCRAVLLRGRKAIRLTQDHKPERPDETARIQQAGGIVISTPCGTHR 296
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A812ZZ64_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812ZZ64_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 2.450e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 KLFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQAGAVR 162
            KLFV N GDC AVL R  K +R++  H P RPDE+ RI  A G V++   G  R
Sbjct:  243 KLFVANCGDCRAVLLRGRKAIRLTQDHKPERPDETARIQQAGGIVISTPCGTHR 296
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A813BU51_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A813BU51_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 2.470e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 KLFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQAGAVR 162
            KLFV N GDC AVL R  K +R++  H P RPDE+ RI  A G V++   G  R
Sbjct:  243 KLFVANCGDCRAVLLRGRKAIRLTQDHKPERPDETARIQQAGGIVISTPCGTHR 296
[Close]
BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A1Q9CZK0_SYMMI (PPM-type phosphatase domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CZK0_SYMMI)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 KLFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQAGAVR 162
            KLFV N GDC AVL R  K +R++  H P RPDE+ RI  A G V++   G  R
Sbjct:  243 KLFVANCGDCRAVLLRGRKAIRLTQDHKPERPDETARIQQAGGIVISTPCGTHR 296
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A7S1VL20_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VL20_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 6.330e-7
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 LFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQ 147
            LFVGN GDC AVL R G+ + +S  H P RPDE  RI    GWV + Q
Sbjct:  528 LFVGNSGDCRAVLCRGGEALDLSTDHKPDRPDERARIEAHGGWVASSQ 575
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: W7TA28_9STRA (Protein phosphatase 1e n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA28_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.100e-6
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    4 LFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTE 144
            ++VGN+GDC A+L R GK   +S    P R DE +RI  A GWV  E
Sbjct:  219 VYVGNVGDCAAILCRDGKAFPLSSAQTPGRKDERERIERANGWVTEE 265
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: A0A4D9CQ52_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ52_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.160e-6
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    4 LFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTE 144
            ++VGN+GDC A+L R GK   +S    P R DE +RI  A GWV  E
Sbjct:  755 VYVGNVGDCAAILCRDGKAFPLSSAQTPGRKDERERIERANGWVTEE 801
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BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 4.190e-6
Identity = 20/52 (38.46%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    4 LFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQAGAV 159
            ++VGN+GDC AVL RRG  + ++  H P+R DE  R+ +A G++  ++   +
Sbjct: 2110 IYVGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYISRDRLNGI 2161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8790.16321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KU51_9PHAE2.420e-1061.22PPM-type phosphatase domain-containing protein n=1... [more]
A0A812IIU8_9DINO3.780e-851.85Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812WEE0_SYMMI2.440e-750.00Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A812ZZ64_9DINO2.450e-750.00Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A813BU51_9DINO2.470e-750.00Hypothetical protein n=2 Tax=unclassified Symbiodi... [more]
A0A1Q9CZK0_SYMMI2.490e-750.00PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S1VL20_9EUKA6.330e-754.17Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]
W7TA28_9STRA4.100e-648.94Protein phosphatase 1e n=2 Tax=Nannochloropsis gad... [more]
A0A4D9CQ52_9STRA4.160e-648.94Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D8LIK7_ECTSI4.190e-638.46cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8790contigH-elongata_contig8790:1105..1278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931280.5101557-CDS-H-elongata_contig8790:1104..12781622931280.5101557-CDS-H-elongata_contig8790:1104..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8790 1105..1278 +
1691679771.5332785-CDS-H-elongata_contig8790:1104..12781691679771.5332785-CDS-H-elongata_contig8790:1104..1278Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8790 1105..1278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8790.16321.1prot_H-elongata_contig8790.16321.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8790 1105..1278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8790.16321.1

>prot_H-elongata_contig8790.16321.1 ID=prot_H-elongata_contig8790.16321.1|Name=mRNA_H-elongata_contig8790.16321.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
KLFVGNLGDCEAVLWRRGKVVRVSPVHNPARPDESQRILDAYGWVMTEQA
GAVRFIA*
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mRNA from alignment at H-elongata_contig8790:1105..1278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8790.16321.1 ID=mRNA_H-elongata_contig8790.16321.1|Name=mRNA_H-elongata_contig8790.16321.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig8790:1105..1278+ (Himanthalia elongata Himel1 dioecious)
AAACTGTTCGTGGGAAATCTTGGGGATTGTGAGGCCGTTCTTTGGAGGAG
AGGTAAAGTCGTGCGCGTGTCCCCTGTGCACAATCCAGCGCGTCCCGACG
AAAGCCAACGTATTCTGGACGCATATGGATGGGTTATGACGGAGCAGGCA
GGCGCTGTGCGATTTATCGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig8790:1105..1278+

>mRNA_H-elongata_contig8790.16321.1 ID=mRNA_H-elongata_contig8790.16321.1|Name=mRNA_H-elongata_contig8790.16321.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig8790:1105..1278+ (Himanthalia elongata Himel1 dioecious)
AAACTGTTCGTGGGAAATCTTGGGGATTGTGAGGCCGTTCTTTGGAGGAG
AGGTAAAGTCGTGCGCGTGTCCCCTGTGCACAATCCAGCGCGTCCCGACG
AAAGCCAACGTATTCTGGACGCATATGGATGGGTTATGACGGAGCAGGCA
GGCGCTGTGCGATTTATCGCTTGAAAACTGTTCGTGGGAAATCTTGGGGA
TTGTGAGGCCGTTCTTTGGAGGAGAGGTAAAGTCGTGCGCGTGTCCCCTG
TGCACAATCCAGCGCGTCCCGACGAAAGCCAACGTATTCTGGACGCATAT
GGATGGGTTATGACGGAGCAGGCAGGCGCTGTGCGATTTATCGCTTGA
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