mRNA_H-elongata_contig12129.1632.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12129.1632.1
Unique NamemRNA_H-elongata_contig12129.1632.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12129.1632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12129contigH-elongata_contig12129:1108..1810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.6837983-CDS-H-elongata_contig12129:1107..12851622929713.6837983-CDS-H-elongata_contig12129:1107..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12129 1108..1285 -
1691679129.003501-CDS-H-elongata_contig12129:1107..12851691679129.003501-CDS-H-elongata_contig12129:1107..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12129 1108..1285 -
1622929713.6974359-CDS-H-elongata_contig12129:1706..18101622929713.6974359-CDS-H-elongata_contig12129:1706..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12129 1707..1810 -
1691679129.0130246-CDS-H-elongata_contig12129:1706..18101691679129.0130246-CDS-H-elongata_contig12129:1706..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12129 1707..1810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12129.1632.1prot_H-elongata_contig12129.1632.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12129 1108..1810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12129.1632.1

>prot_H-elongata_contig12129.1632.1 ID=prot_H-elongata_contig12129.1632.1|Name=mRNA_H-elongata_contig12129.1632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MAGTVDVVASMVKAADLEKLEGEMAMAPRRESVRREYTNSIASEMVASVS
PVRALSRDPLSSSPRQKSYFTTTTPTPIAASTSNDTKAQGCRGT
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mRNA from alignment at H-elongata_contig12129:1108..1810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12129.1632.1 ID=mRNA_H-elongata_contig12129.1632.1|Name=mRNA_H-elongata_contig12129.1632.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=703bp|location=Sequence derived from alignment at H-elongata_contig12129:1108..1810- (Himanthalia elongata Himel1 dioecious)
ATGGCTGGCACGGTTGACGTAGTCGCTTCGATGGTAAAGGCAGCCGACTT
AGAGAAGCTGGAGGGGGAAATGGCCATGGCTCCGAGGCGGGAGAGCGTGC
GAAGGTGCGGCATACGTGTCCCGACTTGAAGATGAGGTGCCTTGGAGGGA
GGGGATATATGCTGGGGGAATCAAAGCGAAACCTTTTGAACGAACCCCTG
GTTTTTCTAGAGATGTTGTGGTTCCGCAGATGTTTTTGGAGCTTGAAAAT
AGGCAGGAGTCCGGGCGGGTTGTTTGGGCACGTGTGGTGTAAAGAGACGT
TCTCTGTAAGGGAGGGAAGATCGGAGGCGTAGTCTAGCTGCGAATAGACT
GGCGGCAAGGCACCGTTATCGTTGCGCTTCCGTCGTGTAGAGCTATTGAC
AAGGTTAATAAGCTTACGAAGGTGCCATGCTTTTTGCGTTGTGTTGCATT
ATGTTTTGTTTAGTTTTTAGTTTTTGCAGACCCTTTTGACTATCTGCCGC
CTTGTCCTCTCACGGAACGCCTCAGGGAGTACACGAACTCGATTGCGTCG
GAGATGGTGGCTTCTGTCAGCCCCGTTCGAGCTCTCTCCCGAGATCCTTT
GTCCTCCTCACCTCGACAAAAATCATATTTCACCACCACCACCCCTACCC
CCATCGCGGCCTCGACCTCCAATGACACGAAGGCGCAAGGCTGTAGAGGG
ACC
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Coding sequence (CDS) from alignment at H-elongata_contig12129:1108..1810-

>mRNA_H-elongata_contig12129.1632.1 ID=mRNA_H-elongata_contig12129.1632.1|Name=mRNA_H-elongata_contig12129.1632.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig12129:1108..1810- (Himanthalia elongata Himel1 dioecious)
ATGGCTGGCACGGTTGACGTAGTCGCTTCGATGGTAAAGGCAGCCGACTT
AGAGAAGCTGGAGGGGGAAATGGCCATGGCTCCGAGGCGGGAGAGCGTGC
GAAGATGGCTGGCACGGTTGACGTAGTCGCTTCGATGGTAAAGGCAGCCG
ACTTAGAGAAGCTGGAGGGGGAAATGGCCATGGCTCCGAGGCGGGAGAGC
GTGCGAAGGGAGTACACGAACTCGATTGCGTCGGAGATGGTGGCTTCTGT
CAGCCCCGTTCGAGCTCTCTCCCGAGATCCTTTGTCCTCCTCACCTCGAC
AAAAATCATATTTCACCACCACCACCCCTACCCCCATCGCGGCCTCGACC
TCCAATGACACGAAGGCGCAAGGCTGTAGAGGGACCGGAGTACACGAACT
CGATTGCGTCGGAGATGGTGGCTTCTGTCAGCCCCGTTCGAGCTCTCTCC
CGAGATCCTTTGTCCTCCTCACCTCGACAAAAATCATATTTCACCACCAC
CACCCCTACCCCCATCGCGGCCTCGACCTCCAATGACACGAAGGCGCAAG
GCTGTAGAGGGACC
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