prot_H-elongata_contig8783.16313.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig8783.16313.1
Unique Name	prot_H-elongata_contig8783.16313.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	537

Homology

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 2.610e-93
Identity = 173/261 (66.28%), Postives = 186/261 (71.26%), Query Frame = 0

Query:    1 MAPHQLFPYDEWGGLRTTRQFLKSDGSVTQNDLCTVAERTV--------LAGGAPKS-TFGDQSKVAGADDC-EALFFSDLDDAVDDXXXXGGVGPE--SNWPRREFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKERMPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQVNP 249
            MAP Q+FPYDE G LRT RQ L                           L   +P + TF +     G   C +    SDL DA+ D XXX     +  + W  REFVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATS+QAN AIE+MHRFEFKHGRFLGVLPSDENRTLFVGGL EEWSC YI  LLKE+MPGLRKVEPIPDREDR KIRTFCFLEF +H EAA IFNRHQ +P
Sbjct:    1 MAPRQVFPYDECGVLRTPRQLLAESQXXXXXXXXXXXXXXXHQREPWLDLDNPSPFTPTFDESGSSGGEAGCVQQPHSSDLRDALKDDXXXXXESLDLGTAWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSP 261

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 4.630e-73
Identity = 138/223 (61.88%), Postives = 153/223 (68.61%), Query Frame = 0

Query:    1 MAPHQLFPYDEWGGLRTTRQFLKSDGSVTQNDLCTVAERTVLAGG--------APKS-TFGDQSKVAGADDC-EALFFSDLDDAVDDXXXXGGVGPESN----WPRREFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKERMPGL 209
            MAP Q+FPY E G LRT RQ L       + +L +        G         +P + TF +     G   C +    SDL DA++D XXX       +    W  REFVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATS+QANRAI++MHRFEFKHGRFLGVLPSDENRTLFVGGL EEWSC YI  LLKE+M  L
Sbjct:    1 MAPRQVFPYHECGVLRTPRQLLAESQQQQRKELESXXXEQHRQGEQWADIDKPSPFTPTFDESGSSGGEAACVQQPHCSDLRDALNDDXXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMVRL 223

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.580e-41
Identity = 82/175 (46.86%), Postives = 110/175 (62.86%), Query Frame = 0

Query:   97 PKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKERMPGLRK--------------------------VEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRH 245
            P  GVEIFVGGLTR++  +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF  S+QAN AIE+M  ++FK G +LG+LPSDENRTL+V G+C+ WS   +         G+++                          ++ + DRE   ++R FCF+EFDTH+ A +   R+
Sbjct:  230 PPPGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSANFEGVKRQVELCAARDAAARRAPLCWRRVASIRMQLVWDRETPSRLRPFCFVEFDTHEHATSAHARY 404

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 159 bits (402), Expect = 8.940e-38
Identity = 82/169 (48.52%), Postives = 108/169 (63.91%), Query Frame = 0

Query:   97 PKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLCEEWSCQYITTLLKERMPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQ 246
            P  GVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF TS+QAN A+ESM  F+FK G +L                    VLPSDENRTL+  G+ E+ S   +   L     G++++  +  +ED  K+R FCF+EF T+++AA     H+
Sbjct:  151 PCPGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFLTRSFEGIKRIHLMWGKEDVCKLRPFCFIEFHTNEQAAVALLSHR 319

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A0A803NB38_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI)

HSP 1 Score: 105 bits (263), Expect = 1.610e-20
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 0

Query:   93 REFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKE-RMPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQ 246
            +E   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLF+G +C  W+ + I   LK+  + G+  +  + D       R FCF++F  H +A   + R Q
Sbjct:  245 KERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 398

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A0A7C9F016_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST)

HSP 1 Score: 106 bits (264), Expect = 2.010e-20
Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 0

Query:   93 REFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKE-RMPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQ 246
            +E   K+  EIFVGGL R    D L+  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLFVG +C  W+ + I   LK+  + G+  +  + D       R FCF++F  H +A   + R Q
Sbjct:  326 KERRVKKEHEIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 479

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A9STT2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9STT2_PHYPA)

HSP 1 Score: 101 bits (252), Expect = 2.270e-20
Identity = 61/159 (38.36%), Postives = 91/159 (57.23%), Query Frame = 0

Query:   91 PRREFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKERMPGLRKVEPIPDRED-RLK--IRTFCFLEFDTHKEAAAIFNRHQ 246
            P  E    + +E+FVGGL + T  + L   F   G+V EVR+ ++ +  + +GY ++RFA++  A RA   + R E + GR  GVLPS+EN TLF+G + + W  + +   LK+    +  VE I   ED +L+   R F F+EF+THKEA   F R Q
Sbjct:    8 PISERRKHKKLEVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYAFIRFASAAIAKRASHDLERVEIR-GRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKF--AIENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQ 163

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A0A803NC05_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NC05_CHEQI)

HSP 1 Score: 105 bits (263), Expect = 3.380e-20
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 0

Query:   93 REFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKE-RMPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQ 246
            +E   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLF+G +C  W+ + I   LK+  + G+  +  + D       R FCF++F  H +A   + R Q
Sbjct:  542 KERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 695

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: UPI00053FBE2C (nucleolin-like isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FBE2C)

HSP 1 Score: 105 bits (262), Expect = 3.820e-20
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 0

Query:   93 REFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKE-RMPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQ 246
            +E   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M       G+  G  P+++N TLF+G +C  W+ + I   LKE  + G+  +  + D       R FCF++F  H +A   + R Q
Sbjct:  336 KERKVKKELEIFVGGLDREVVEDDVKTAFEKVGEVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALSEMKN-PVICGKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKEYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 489

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BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Match: A0A0D6QWI2_ARACU (Uncharacterized protein n=2 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6QWI2_ARACU)

HSP 1 Score: 105 bits (262), Expect = 3.950e-20
Identity = 56/155 (36.13%), Postives = 92/155 (59.35%), Query Frame = 0

Query:   93 REFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITTLLKER-MPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQ 246
            +E   K+ +E+FVGGL +    + +R  F   GEV EVR+ R+    + +G+ +VRFAT++QA RA++ M     + G+  GV PS++N TLF+G +C+ W+ + +   LK+  + GL ++  + D ++    R F FLEF TH +A   + R Q
Sbjct:  270 QERRKKKELEVFVGGLDKDAVEEDIRKVFLPIGEVLEVRLLRNPLTNKNKGFAFVRFATTEQAKRAVDEMKNPVIR-GKRCGVAPSEDNDTLFLGNICKTWTKEAVKNKLKDYGVDGLEELTLVGDTQNEGLSRGFAFLEFSTHYDAMNAYKRLQ 423

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot

BLAST of mRNA_H-elongata_contig8783.16313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K9D0_9PHAE	2.610e-93	66.28	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FYA2_ECTSI	4.630e-73	61.88	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CJD8_9STRA	2.580e-41	46.86	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A836CKV5_9STRA	8.940e-38	48.52	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A803NB38_CHEQI	1.610e-20	36.13	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A7C9F016_OPUST	2.010e-20	37.42	Uncharacterized protein (Fragment) n=1 Tax=Opuntia...	[more]
A9STT2_PHYPA	2.270e-20	38.36	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
A0A803NC05_CHEQI	3.380e-20	36.13	Uncharacterized protein n=2 Tax=Chenopodium quinoa...	[more]
UPI00053FBE2C	3.820e-20	36.77	nucleolin-like isoform X1 n=2 Tax=Beta vulgaris su...	[more]
A0A0D6QWI2_ARACU	3.950e-20	36.13	Uncharacterized protein n=2 Tax=Araucaria cunningh...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 102..176 e-value: 3.8E-20 score: 82.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 103..168 e-value: 9.2E-18 score: 63.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 101..180 score: 16.654
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 61..180 e-value: 2.4E-20 score: 75.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 181..255 e-value: 1.0E-8 score: 37.1
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 83..246
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 102..243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig8783	contig	H-elongata_contig8783:2363..5449 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig8783.16313.1	mRNA_H-elongata_contig8783.16313.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig8783 2218..9240 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig8783.16313.1 ID=prot_H-elongata_contig8783.16313.1|Name=mRNA_H-elongata_contig8783.16313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=537bp
MAPHQLFPYDEWGGLRTTRQFLKSDGSVTQNDLCTVAERTVLAGGAPKST
FGDQSKVAGADDCEALFFSDLDDAVDDDDDDGGVGPESNWPRREFVPKRG
VEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFA
TSDQANRAIESMHRFEFKHGRFLGVLPSDENRTLFVGGLCEEWSCQYITT
LLKERMPGLRKVEPIPDREDRLKIRTFCFLEFDTHKEAAAIFNRHQVNPP
PAQQQQPGYPTRNSLGQEKSPPSDIVKYTLKEHAFLGFERETRINSSGTA
SISGSSGDICGNGRGGGCSAVSVPESAECSGTRLASTPELVPWDATDVRR
AQGSVLTADANSMPRDSHRTFGSDWWLRSMKDLGGGDDSGSGGDENASGS
ATTPKPNVDGETFAAWEDPVEGKSDNGGKNNGQPLVVDGAVLKVDWADPL
RYHHARRCWKQFGEGWGSFCCEQASELRPGPLANLPVASGRAPAAGSFGG
QPHARAPHRVPAIPAAPEASASNTIYRASSRSSPLP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf