mRNA_H-elongata_contig87759.16307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87759.16307.1
Unique NamemRNA_H-elongata_contig87759.16307.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: D8LCV3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV3_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 1.710e-89
Identity = 140/200 (70.00%), Postives = 159/200 (79.50%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGD------GIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFLEIRTGSD 582
            R+ +  F+      +VIPV+ HILGTMAGGAADCTFWLRYL MQA +FE +NGF MPVATAARVLAD LLGQRG+GLSVGTM+MG DR    S G G       G G+L+YVDS+GARVKG YFSVGSGSTYAYS+LDE YR  MSL EAADLA+RAVRHAT+RDAFSGGFINVFVV ASGW+R+  DDSGFL++   SD
Sbjct:   54 RASMGSFVGSRTTQKVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRGSVSGGNQGGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQPSD 253
[Close]
BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: C1EIU4_MICCC (Proteasome subunit beta n=4 Tax=Micromonas TaxID=38832 RepID=C1EIU4_MICCC)

HSP 1 Score: 183 bits (464), Expect = 3.680e-54
Identity = 96/189 (50.79%), Postives = 129/189 (68.25%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFLEI 567
            R+   P+++     +VI +  ++LGTMAGGAADC FW R L +Q  + E +NG  + VA A+++LA+TL G RG+GLS+GTMV G D  G G          LYYVDS+G R+KG  FSVGSGS +AY +LD+ YR D+S+ EA +L RRA+ HATFRDAFSGG I+V+ V+ +GW++VS  D G L  
Sbjct:   81 RASQGPYISSQTVKKVIEINPYLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRISVAGASKLLANTLYGYRGQGLSMGTMVAGWDLKGPG----------LYYVDSDGTRLKGQRFSVGSGSLFAYGVLDQGYRWDLSVEEACELGRRAIYHATFRDAFSGGTISVYHVNENGWTKVSGTDVGELHF 259
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BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: A0A454XIE3_OSTTA (Proteasome subunit beta n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XIE3_OSTTA)

HSP 1 Score: 181 bits (460), Expect = 1.600e-53
Identity = 93/189 (49.21%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFLEI 567
            R+   P+++     +VI +   +LGTMAGGAADC FW R L +Q  + E +NG  + V  A+++LA+TL   +GRGLS+GTM+ G D +G G          LYYVDSEG R+KG  FSVGSGS +AY +LD+ YR D+S++EA +L RRA+ HATFRDAFSGG ++V+ V  +GW++V+ DD G L  
Sbjct:   82 RASQGPYISSQTVKKVIEINPFLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRITVRAASKLLANTLYSYKGRGLSMGTMIAGWDLNGPG----------LYYVDSEGTRLKGQRFSVGSGSLFAYGVLDQGYRWDLSVKEACELGRRAIYHATFRDAFSGGTVSVYHVGKNGWTKVTGDDVGELHF 260
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BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: M2W568_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W568_GALSU)

HSP 1 Score: 181 bits (458), Expect = 1.870e-53
Identity = 90/172 (52.33%), Postives = 122/172 (70.93%), Query Frame = 1 
Query:   43 QVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGF 558
            +VI +  ++LGTMAGGAADCTFW RYL M+  IFE +N   + VA A+++L +T+   +G GLS+GTM+MG D+ G            +YYVDSEG R+KGS FSVGSGST+A  +LD+ Y+ +MS+ EA +L RR++ HAT RDAFSGG+INV+ +   GW  +S +DSGF
Sbjct:   91 KVIEINKYLLGTMAGGAADCTFWERYLGMRCRIFELKNKERISVAAASKILCNTVYQYKGMGLSMGTMIMGWDKKGP----------HIYYVDSEGTRLKGSKFSVGSGSTHALGVLDQGYKWNMSVEEACELGRRSIYHATHRDAFSGGYINVYYIGPDGWKFISHEDSGF 252
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BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: A0A7S0CT45_MICPS (Proteasome subunit beta n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CT45_MICPS)

HSP 1 Score: 180 bits (456), Expect = 5.570e-53
Identity = 94/189 (49.74%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFLEI 567
            R+   P+++     +VI +  ++LGTMAGGAADC FW R L +Q  + E +NG  + V  A+++LA+TL G RG+GLS+GTMV G D +G G          LYYVDS+G R+KG  FSVGSGS +AY +LD+ Y+ D+S+ EA +L RRA+ HATFRDAFSGG I+V+ VS  GW+++S  D G L  
Sbjct:   89 RASQGPYISSQTVKKVIEINPYLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRISVCGASKLLANTLYGYRGQGLSMGTMVAGWDLTGPG----------LYYVDSDGTRLKGQRFSVGSGSLFAYGVLDQGYKWDLSVAEACELGRRAIYHATFRDAFSGGTISVYHVSEKGWTKMSGTDVGELHF 267
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BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: A4S728_OSTLU (Proteasome subunit beta n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S728_OSTLU)

HSP 1 Score: 179 bits (455), Expect = 9.840e-53
Identity = 92/189 (48.68%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFLEI 567
            R+   P+++     +VI +   +LGTMAGGAADC FW R L +Q  + E +NG  + V  A+++LA+TL   +G+GLS+GTMV G D +G G          LYYVDSEG R+KG  FSVGSGS +AY +LD+ Y+ D+++ EA +L RRA+ HATFRDAFSGG ++V+ V A+GW++V+ DD G L  
Sbjct:   83 RASQGPYISSQTVKKVIEINPFLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRITVRAASKLLANTLYSYKGKGLSMGTMVAGWDLNGPG----------LYYVDSEGTRLKGQRFSVGSGSLFAYGVLDQGYKWDLTVEEACELGRRAIYHATFRDAFSGGTVSVYHVGANGWTKVTGDDVGELHF 261
[Close]
BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: A0A7S0RES2_9CHLO (Proteasome subunit beta n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RES2_9CHLO)

HSP 1 Score: 178 bits (451), Expect = 1.460e-52
Identity = 93/187 (49.73%), Postives = 125/187 (66.84%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFL 561
            R+ + P+++     +VI +  H+LGTMAGGAADC FW R L MQ  ++E  N   + VA A+++LA+TL   RG GLS+GTMV G D SG            LYYVDSE  R+KG  FSVGSGS +AY +LD+ Y+ DM+  EA +L R+A+ HATFRDA+SGG ++V+ V+  GW++VS DD G L
Sbjct:   78 RASMGPYISSQTVKKVIEINPHLLGTMAGGAADCQFWQRNLGMQTRLYELNNKKRISVAGASKLLANTLFSYRGMGLSMGTMVAGWDDSGP----------SLYYVDSEAQRIKGERFSVGSGSLFAYGVLDQGYKWDMTDEEARELGRKAIYHATFRDAYSGGTVSVYHVTQDGWTKVSGDDVGEL 254
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BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: A0A6J0PFA4_ELAGV (Proteasome subunit beta n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6J0PFA4_ELAGV)

HSP 1 Score: 177 bits (449), Expect = 3.900e-52
Identity = 94/190 (49.47%), Postives = 125/190 (65.79%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFLEIR 570
            R+ +  +++     ++I +  +++GTMAGGAADC FW R L ++  + E  N   + VA A+++LA+ L   RG GLSVGTM+ G D +G G          LYYVDSEG R+KG+ FSVGSGS YAY +LD  YR DMS+ EAA+LARRA+ HATFRDA SGG  +V+ V  SGW ++S DD G L  R
Sbjct:   74 RASMGGYISSQTVKKIIEINPYMIGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGAG----------LYYVDSEGGRLKGTRFSVGSGSPYAYGVLDNGYRYDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPSGWKKLSGDDVGELHFR 253
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BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: K8EAG6_9CHLO (Proteasome subunit beta n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EAG6_9CHLO)

HSP 1 Score: 178 bits (451), Expect = 5.750e-52
Identity = 92/187 (49.20%), Postives = 127/187 (67.91%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFL 561
            R+   P+++     +VI +   +LGTMAGGAADC FW R L +Q  + E + G  + V  A+++LA+TL G RGRGLS+GTMV G D +G G          L+YVDS+G R+KG  FSVGSGS +AY +LD+ +R D+S++EAA+L RRA+ HATFRDAFSGG ++V+ V   GW+++S  D G L
Sbjct:   84 RASQGPYISSQTVKKVIEINPFLLGTMAGGAADCQFWQRNLGIQCRLHELETGKRITVTGASKLLANTLYGYRGRGLSMGTMVAGWDTTGPG----------LFYVDSDGTRLKGKRFSVGSGSLFAYGVLDQGFRHDLSIKEAAELGRRAIYHATFRDAFSGGTVSVYHVGPDGWTKMSGTDVGEL 260
[Close]
BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Match: C1N025_MICPC (Proteasome subunit beta n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N025_MICPC)

HSP 1 Score: 177 bits (449), Expect = 5.790e-52
Identity = 91/187 (48.66%), Postives = 128/187 (68.45%), Query Frame = 1 
Query:    1 RSFLAPFLAMFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVATAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSEGARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRDAFSGGFINVFVVSASGWSRVSADDSGFL 561
            R+   P+++     +VI +  ++LGTMAGGAADC FW R L +Q  + E +NG  + V+ A+++L++TL G RG+GLS+GTMV G D +G G          LYYVDS+G R+KG  FSVGSGS +AY +LD+ YR D+S+ +A +L RRA+ HATFRDAFSGG ++V+ V   GW+++S  D G L
Sbjct:   78 RASQGPYISSQTVKKVIEINPYLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRISVSGASKLLSNTLYGYRGQGLSMGTMVAGWDLNGPG----------LYYVDSDGTRLKGKRFSVGSGSLFAYGVLDQGYRWDLSVEDACELGRRAIYHATFRDAFSGGTVSVYHVGPDGWTKMSGTDVGEL 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87759.16307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV3_ECTSI1.710e-8970.00Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
C1EIU4_MICCC3.680e-5450.79Proteasome subunit beta n=4 Tax=Micromonas TaxID=3... [more]
A0A454XIE3_OSTTA1.600e-5349.21Proteasome subunit beta n=2 Tax=Ostreococcus tauri... [more]
M2W568_GALSU1.870e-5352.33Proteasome subunit beta n=1 Tax=Galdieria sulphura... [more]
A0A7S0CT45_MICPS5.570e-5349.74Proteasome subunit beta n=1 Tax=Micromonas pusilla... [more]
A4S728_OSTLU9.840e-5348.68Proteasome subunit beta n=1 Tax=Ostreococcus lucim... [more]
A0A7S0RES2_9CHLO1.460e-5249.73Proteasome subunit beta n=1 Tax=Pyramimonas obovat... [more]
A0A6J0PFA4_ELAGV3.900e-5249.47Proteasome subunit beta n=4 Tax=Arecaceae TaxID=47... [more]
K8EAG6_9CHLO5.750e-5249.20Proteasome subunit beta n=1 Tax=Bathycoccus prasin... [more]
C1N025_MICPC5.790e-5248.66Proteasome subunit beta n=2 Tax=Micromonas pusilla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87759contigH-elongata_contig87759:110..2509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.6
Seed ortholog evalue3.3e-71
Seed eggNOG ortholog2880.D8LCV3
Preferred namePSMB11
KEGG koko:K02737,ko:K02740,ko:K05654,ko:K11598
KEGG TC3.A.1.209
KEGG Pathwayko02010,ko03050,ko04145,ko04612,ko05168,ko05340,map02010,map03050,map04145,map04612,map05168,map05340
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010033,GO:0016579,GO:0016787,GO:0019221,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030162,GO:0030217,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034340,GO:0036037,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043374,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045321,GO:0045444,GO:0046631,GO:0046632,GO:0046649,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060337,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902494,GO:1905368,GO:1905369,GO:1990111
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0175@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog description20S proteasome beta 5 subunit
Ec32 orthologEc-07_007040.1
Exons4
Model size588
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87759.16307.1prot_H-elongata_contig87759.16307.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87759 110..2482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.592722-CDS-H-elongata_contig87759:109..2101622931278.592722-CDS-H-elongata_contig87759:109..210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 110..210 -
1691679770.8773365-CDS-H-elongata_contig87759:109..2101691679770.8773365-CDS-H-elongata_contig87759:109..210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 110..210 -
1622931278.6192937-CDS-H-elongata_contig87759:780..9051622931278.6192937-CDS-H-elongata_contig87759:780..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 781..905 -
1691679770.8989315-CDS-H-elongata_contig87759:780..9051691679770.8989315-CDS-H-elongata_contig87759:780..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 781..905 -
1622931278.6350036-CDS-H-elongata_contig87759:1306..15361622931278.6350036-CDS-H-elongata_contig87759:1306..1536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 1307..1536 -
1691679770.907611-CDS-H-elongata_contig87759:1306..15361691679770.907611-CDS-H-elongata_contig87759:1306..1536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 1307..1536 -
1622931278.6509833-CDS-H-elongata_contig87759:2377..24821622931278.6509833-CDS-H-elongata_contig87759:2377..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 2378..2482 -
1691679770.9164586-CDS-H-elongata_contig87759:2377..24821691679770.9164586-CDS-H-elongata_contig87759:2377..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87759 2378..2482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.6734078-UTR-H-elongata_contig87759:2482..25091622931278.6734078-UTR-H-elongata_contig87759:2482..2509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87759 2483..2509 -
1691679770.9268482-UTR-H-elongata_contig87759:2482..25091691679770.9268482-UTR-H-elongata_contig87759:2482..2509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87759 2483..2509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87759.16307.1

>prot_H-elongata_contig87759.16307.1 ID=prot_H-elongata_contig87759.16307.1|Name=mRNA_H-elongata_contig87759.16307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MFLAVQVIPVADHILGTMAGGAADCTFWLRYLTMQANIFESQNGFPMPVA
TAARVLADTLLGQRGRGLSVGTMVMGCDRSGEGSKGIGDGIGKLYYVDSE
GARVKGSYFSVGSGSTYAYSILDESYRPDMSLREAADLARRAVRHATFRD
AFSGGFINVFVVSASGWSRVSADDSGFLEIRTGSDGS
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mRNA from alignment at H-elongata_contig87759:110..2509-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87759.16307.1 ID=mRNA_H-elongata_contig87759.16307.1|Name=mRNA_H-elongata_contig87759.16307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2400bp|location=Sequence derived from alignment at H-elongata_contig87759:110..2509- (Himanthalia elongata Himel1 dioecious)
CGATCGTTCCTCGCGCCGTTCCTTGCGATGTTCCTCGCGGTCCAGGTGAT
CCCCGTGGCGGATCACATCCTCGGCACCATGGCTGGAGGGGCGGCGGACT
GCACCTTCTGGCTTCGTTACTTGACGATGCAGGTCTGTCTGTGTTGCCAC
GACAGGTCACGGGGAGCTCGTGTTAGTAGTAGTAGCGATATGGTTCTGCA
GGAGGAGTGCTGAATGAAACGAAACGCCTCCGGGTAATAGAAACACGTGG
GCGGGAGCTCCGGGTACAGAAGAAATTGGAAGAACGTACTCGCGCACGCG
TGCGAAGCTTTTTGGTATTCCCCTCGGGCGGGTGCTTCGTTTCGGCTGTG
CGTAGGAACTCCCGCGTTTTTATTCGCTCAGGGACATATCCGGTTGATCC
ATACTCTGATTCATGCGATAAACACACATATTATATGGATGCGTAATGGA
GGCCTACGGTGTGTGGACTGCTTTTTCCTTTTTTGTTTTCTGGCCACGCC
ACAAATTTTGAAAACATCGCGCGCAAGAGATCGAAGTAGGGCAGAAAACG
CCATTTTGCTGGCGGCGGGTGCTTTTTTTTTTTTTTTTTTTTTTTATTTT
TTTGTTAAGTATTTTTTTTTTGGCTATTGGCGGTTACTTATGTAGGAAAA
TGGTCTNNNNNNNNNNCCCTTTTCTCCTCCCGCTGGTTTTTTTTTTTTTT
TTTTTTTAAAGCGACATCTTTGGCTAAGTATTTTGTTTTGGGCCATCGGC
GATCAATCATGTAGAAAAATGCTCTGTCCGACTGAGGACGCGTGATCGGT
GGCATAACAACGAAGGGGTGCAAAACTTGAGTAGTCCCCCCTGGTCGGCA
AAACCCCAACATGGCATATCGCTCCTTCAGGGTATCGTTGAGATTTGTGG
TCGATGTCCGTCACGAAACGGCTTGCGCTTAACTTACGCTCCCCCTCCCC
TGACCCGTCTTGTTCCAATAAAGGCCAACATCTTCGAATCCCAAAACGGG
TTTCCCATGCCGGTGGCCACAGCGGCACGGGTACTTGCGGACACCCTCCT
GGGACAACGAGGGAGGGGTTTATCGGTCGGGACAATGGTCATGGGGTGCG
ATCGCAGCGGCGAAGGCAGCAAGGGTATCGGCGACGGCATTGGGAAGCTC
TACTACGTCGACAGCGAAGGGGCCAGGGTAAAGGGGAGCTATTTCTCCGT
CGGGTAAGCTTGATAGGAACTAATTATGACGCGATAGGGGGTAATTATGA
CGTGTGATGGGGGATAATTATGACGTCCGCGCGTGCACCTCACTCGGAAC
TAAAACAAGTGATAGAGTCCACGGGTTCGCGACGGAGCTGCGGCGCGAGC
CCTGGTCGCAAGCTTTAGCGACGCGGAGATGCGTGGGAAGCGTTTTAATT
CTTGGCGGGTTGACGCTGCTAGGATGCGTAGCGTTCGTGCGGCTCGTGAG
ACGAGCTGCTGCATCTTTCCCGCGGCTCGATTTAATCGACGACGGCATCA
TTCGGTTTTCCCGTGTTTCGGGTGCGTTTTTTGTCGCGGGTGCGCATGTG
GGTCCGGGGTGACTCCGCTCTCGGCCGTCAATCCCTGGAAAATGCTGCGA
ACAGTTCGGGAAGCACGTACGCGTACAGCATCCTGGACGAGAGCTACCGC
CCGGATATGTCATTGCGAGAGGCAGCCGACCTTGCCAGAAGGGCTGTGCG
CCACGCCACGTTCAGGGATGCCTTCTCGGGTGCGGAACGTTTCCAAATTT
CACTGCTTAACTATAGAGCAGCTTTCTTTTAGGCTGTAAAAAAACTCGCG
CGCGCTTTTTGCCCCCGCTCGTGCCTTGTTCTACTTTTTTTTCTTCTCCT
TCTATCCTCACGATGCGCCGCCGATTTTGTTTTCCCGATGTCCAGCATGA
TCATGATCGCGTGTCGTGCCGCCCATATTGTAAATATTGTATATATTGTA
TATATCATTTATATTTTATATATTGTATATATTTCAGGTATTATTTATAT
CTTGTATATGTTGTAAATCTTGTATAGCCTTTTTGGAGTGGTCCACGACA
TCACGATGGCATTTGTGCTGCTATATGGCGAGGGTGCGATCGTGGCTGCG
AGGAAGCGGAGGCTTGTGGTACCACGTGGCATTTATTTAGTCATATACTC
ACTGAGGTTGGTGCCAACCTCGGCCTTGACCGCTTCCCTCTTTCTCTGTC
ATAGTCTCTCTCTTTTAGCAGTCCCGCACTCTCTCTCCATCTTAAACTCT
CTCTCTCTGTCATTTATATCGTTGGTCTTATCGGCACCGACAAACTTAGG
CGGCTTTATCAACGTTTTTGTCGTAAGCGCATCTGGGTGGTCGCGCGTAA
GCGCCGACGATTCGGGGTTCTTGGAAATTCGAACCGGAAGCGATGGCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig87759:110..2509-

>mRNA_H-elongata_contig87759.16307.1 ID=mRNA_H-elongata_contig87759.16307.1|Name=mRNA_H-elongata_contig87759.16307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig87759:110..2509- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTCGCGGTCCAGGTGATCCCCGTGGCGGATCACATCCTCGGCAC
CATGGCTGGAGGGGCGGCGGACTGCACCTTCTGGCTTCGTTACTTGACGA
TGCAGATGTTCCTCGCGGTCCAGGTGATCCCCGTGGCGGATCACATCCTC
GGCACCATGGCTGGAGGGGCGGCGGACTGCACCTTCTGGCTTCGTTACTT
GACGATGCAGGCCAACATCTTCGAATCCCAAAACGGGTTTCCCATGCCGG
TGGCCACAGCGGCACGGGTACTTGCGGACACCCTCCTGGGACAACGAGGG
AGGGGTTTATCGGTCGGGACAATGGTCATGGGGTGCGATCGCAGCGGCGA
AGGCAGCAAGGGTATCGGCGACGGCATTGGGAAGCTCTACTACGTCGACA
GCGAAGGGGCCAGGGTAAAGGGGAGCTATTTCTCCGTCGGGCCAACATCT
TCGAATCCCAAAACGGGTTTCCCATGCCGGTGGCCACAGCGGCACGGGTA
CTTGCGGACACCCTCCTGGGACAACGAGGGAGGGGTTTATCGGTCGGGAC
AATGGTCATGGGGTGCGATCGCAGCGGCGAAGGCAGCAAGGGTATCGGCG
ACGGCATTGGGAAGCTCTACTACGTCGACAGCGAAGGGGCCAGGGTAAAG
GGGAGCTATTTCTCCGTCGGTTCGGGAAGCACGTACGCGTACAGCATCCT
GGACGAGAGCTACCGCCCGGATATGTCATTGCGAGAGGCAGCCGACCTTG
CCAGAAGGGCTGTGCGCCACGCCACGTTCAGGGATGCCTTCTCGGTTCGG
GAAGCACGTACGCGTACAGCATCCTGGACGAGAGCTACCGCCCGGATATG
TCATTGCGAGAGGCAGCCGACCTTGCCAGAAGGGCTGTGCGCCACGCCAC
GTTCAGGGATGCCTTCTCGGGCGGCTTTATCAACGTTTTTGTCGTAAGCG
CATCTGGGTGGTCGCGCGTAAGCGCCGACGATTCGGGGTTCTTGGAAATT
CGAACCGGAAGCGATGGCAGCGCGGCTTTATCAACGTTTTTGTCGTAAGC
GCATCTGGGTGGTCGCGCGTAAGCGCCGACGATTCGGGGTTCTTGGAAAT
TCGAACCGGAAGCGATGGCAGC
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