mRNA_H-elongata_contig87713.16303.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87713.16303.1 vs. uniprot
Match: D7FIG3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG3_ECTSI) HSP 1 Score: 310 bits (795), Expect = 3.990e-96 Identity = 205/490 (41.84%), Postives = 253/490 (51.63%), Query Frame = 1
Query: 28 CLGVAVFYSTRRFEKTAEMRVFFPEHAWRLRADSGQFGDGN--------------------------------------IGSDEG---SRLGDASTTSRLEEDLSSKHDTAVMVRLKLKKEWEGAGEVGRGGKRNLGVETRPGNADPSPSITLVNCHLWYHPARPDLKTAQCKLLFDAIRRFHRKCGVIAGSDNAGRSPGEKEDSLDGTSESRGEVGLGRHLAPANLILCGDFNSVPFVNPEFLPGSLKPQAEA------TAGLEDRATPEGFLTDGGIYPTYPSTDRTASGVYSLLAYGHVSASHPEHPDAFIPELVG-----------IEKTRG--YFTTSRAERIRWMSLGVTPSPHRPTGAWCSGFGSALEDVYRDRGVSAPRFTTKTSDFRGIIDHIFVSSGEKSSGLMVTGVLGFPEGADLSPEYVSDALSTSASAEQPGGDGSEFSQAPTAKNMPPRG--FGPIPDDIWGSDHLALGVEVSLL 1311
CLGVA+FYS+ FEK AE+RV F E LR D G+ G+ + G D G R D +T SRLE+DL+++HD A +VRL+LK+ + E G GK G S T+V HL+Y P RPDLKTAQC++LF AI R H KCGV + G ++ E+ L PANL+LC DFNS P V+P FLPG LK A+A G +D + P YPS+ TASGVY LL YG V +HPEHPD FIPE + + K G +T R R R V P+ HRP+G W SGFG LED YRDRG +P FTTKTS F GIIDHIFVS+GEK SGL ++GVL FP GA L+ + S+ EQ G + + Q + PP FGPIP+ +WGSDHLALGVE+ LL
Sbjct: 164 CLGVAIFYSSTHFEKMAEVRVVFSEETLGLREDRGREGERSHSSRASELPEAVPAAPKATTTRAGKGAAPPCDQFLRRVYGGDTGRGAKREQDPATVSRLEQDLANRHDAAALVRLRLKESDDL--EEGASGKGXXXXXXENGR-----SFTVVCAHLFYDPNRPDLKTAQCQMLFQAIDRLHEKCGVASAL---------------GGGKAGSEI---PSLGPANLVLCADFNSKPLVDPWFLPGPLKAAAQARLQTTAAIGSQDPSAPTPGSQPNTSKDVYPSSQATASGVYCLLNYGCVPPTHPEHPDTFIPEWLKRKEQEEISRQELPKVGGGKLWTPRRTRRTR--GAPVVPAEHRPSGEWVSGFGGTLEDAYRDRGAVSPSFTTKTSSFSGIIDHIFVSTGEKDSGLAISGVLAFPPGAHLTEGR--ETTSSGEDLEQSGPEPTPDRQEEHSPTDPPAWGEFGPIPNKLWGSDHLALGVELVLL 624
BLAST of mRNA_H-elongata_contig87713.16303.1 vs. uniprot
Match: A0A7S4DBB1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBB1_HETAK) HSP 1 Score: 88.2 bits (217), Expect = 4.190e-15 Identity = 87/330 (26.36%), Postives = 125/330 (37.88%), Query Frame = 1
Query: 355 ITLVNCHLWYHPARPDLKTAQCKLLFDAIRRFHRKCGVIAGSDNAGRSPGEKEDSLDGTSESRGEVGLGRHLAPANLILCGDFNSVPFVNPEFLPGSLKPQAEATAGLEDRATPEGFLTDGGIYPTYPSTDRTASGVYSLLAYGHVSASHPEHPDAFIPELV-------------GIEKTRGYFTTSRAERIRWMSLGVTPSPHRPTGAWCSGFGSALEDVYRDRGVSAPRFTTKTSDFRGIIDHIFVSSGEKSSGLMVTGVLGFPEGADLSPEYVSDALSTSASAEQPGGDGSEFSQAPTAKNMPPRGFGPIPDDIWGSDHLALGVEVS 1305
+VN H ++ P PD K Q + A++ F V+ G SP EKE ++I CGD NSVP+V E+LPG+ + + T +E + + F + P + S VY+LL +G V SH +HPDA G+ + G S A R S+G+ P + G G + P FTTKT+ F ID+++ G K ++V +L FPE + F P+P+ WGSDHLALGV S
Sbjct: 264 FVVVNMHNFFDPWFPDTKACQVAGVARALQIFLNDM-VLEGV----LSPDEKE--------------------KVHIIFCGDMNSVPYVQEEWLPGNKEMRYYQTKDIEILESSDKFALGRNV----PESAEDMSAVYALLHFGEVRPSHVQHPDALHLHRTTAAATKDSPGKQGGLAEKEGSSKGSAAGR----SVGLLEGPRGLRNLYMEGDGR----------MHLPSFTTKTNVFCATIDYLW---GTKD--VVVEQLLQFPENTER--------------------------------------FSPVPNQFWGSDHLALGVTFS 507
BLAST of mRNA_H-elongata_contig87713.16303.1 vs. uniprot
Match: A0A6U5YHS5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5YHS5_GUITH) HSP 1 Score: 70.5 bits (171), Expect = 2.550e-9 Identity = 86/325 (26.46%), Postives = 120/325 (36.92%), Query Frame = 1
Query: 340 DPSPSITLVNCHLWYHPARPDLKTAQCKLLFDAIRRFHRKCGVIAGSDNAGRSPGEKEDSLDGTSESRGEVGLGRHLAPANLILCGDFNSVPFVNPEFLPGSLKPQAEATAGLEDRATPEGFLTDGGIYPTYPSTDRTASGVYSLLAYGHVSASHPEHPDAFIPELVGIEKTRGYFTTSRAERIRWMSLGVTPSPHRPTGAWCSGFGSALEDVYRDR-GVSAPRFTTKTSDFRGIIDHIFVSSGEKSSGLMVTGVLGFPEGADLSPEYVSDALSTSASAEQPGGDGSEFSQAPTAKNMPPRGFGPIPDDIWGSDHLALGVEVSLL 1311
D S I + N L++HP P +K Q +L+ AI RF R LG + ++LCGDFNSVP + +FLP + L R+ G T + +R+A V LL G ++ HPEHPD F K + +++R + SP G +G L+D Y G AP TT T +F G ID+I+ S ++ VL P D S S P F PIP+ + SDHLAL + L+
Sbjct: 341 DSSRLILVANTQLFWHPGFPHVKALQAELVCRAITRF------------------------------RDRHQLGERVP---VVLCGDFNSVPEMQIQFLPTRQREYL-----LSSRSQ--------GANGTLDAHNRSA--VVQLLRSGKLATDHPEHPDTFGRGWEAKGKPFSEMSKEEKKQMRDLKKSSYRSPSWSYGQLHTGL--LLQDTYEHMLGRPAP-LTTCTREFSGAIDYIW-----HSPQVVPCAVLELPY------------------------DVSSMSNVPNRSEQTL--FPPIPNQDFPSDHLALAADFELV 583
BLAST of mRNA_H-elongata_contig87713.16303.1 vs. uniprot
Match: A0A835WGX7_9CHLO (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WGX7_9CHLO) HSP 1 Score: 63.2 bits (152), Expect = 4.100e-7 Identity = 65/245 (26.53%), Postives = 97/245 (39.59%), Query Frame = 1
Query: 583 LILCGDFNSVPFVNPEFLPGSLKPQAEATAGLEDRATPEGFLTDGGIYPTYPSTDRTASGVYSLLAYGHVSASHPEHPDAFIPELVGIEKTRGYFTTSRAERIRWMSLGVTPSPHRPTGAWCSGFGSALEDVYRDRGVSAPRFTTKTSDFRGIIDHIFVSSGEKSSGLMVTGVLGFPEGADLSPEYVSDALSTSASAEQPGGDGSEFSQAPTAKNMPPRGFG--PIPDDIWGSDHLALGVEVSLL 1311
++LCGDFNS L ++ P+ F P P R SGVY LL+ G ++ HP+HP TR + A + + G +P P S G L + P TT+T+ F G +D++++S GL VT L P SP ++ + + G G+ S P P P+P++ +GSDHLA+G EV +
Sbjct: 234 VVLCGDFNS----------------------LAEKRQPDVFD------PQVPEGARQVSGVYQLLSGGTLAPDHPDHPH-----------TRVWKPGPMAPTV--IPAGGEGAPRFPALP-LSASGLRLGSLNALAFGREPPLTTRTATFAGTLDYVWLSQ----PGLEVTAALSLPFEDGGSPPLMAPGAAAA-------GPGAAASTQPGTWRDPVADVAMVPVPNEEYGSDHLAVGGEVQFV 425
BLAST of mRNA_H-elongata_contig87713.16303.1 vs. uniprot
Match: A0A7S4C664_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C664_CHRCT) HSP 1 Score: 57.0 bits (136), Expect = 4.060e-6 Identity = 41/162 (25.31%), Postives = 64/162 (39.51%), Query Frame = 1
Query: 355 ITLVNCHLWYHPARPDLKTAQCKLLFDAIRRFHRKCGVIAGSDNAGRSPGEKEDSLDGTSESRGEVGLGRHLAPANLILCGDFNSVPFVNPEFLPGSLKPQAEATAGLEDRATPEGFLTDGGIYPTYPSTDRTASGVYSLLAYGHVSASHPEHPDAFIPELV 840
+ + HL++ P RP++K AQ +L+ +A RF +C PA +++ GDFNSVP + PEF+ G++ E + + + S VY L + G A HPEHPD F P+ +
Sbjct: 44 VLVATTHLFWDPYRPEVKAAQAELVAEATTRFLIECD-----------------------------------RPAAVVITGDFNSVPHLQPEFI------------GID---VSEEEMRENSL-----------SAVYQLYSQGICPARHPEHPDRFKPKAL 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87713.16303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87713.16303.1 >prot_H-elongata_contig87713.16303.1 ID=prot_H-elongata_contig87713.16303.1|Name=mRNA_H-elongata_contig87713.16303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=442bp RRLRLNYDGCLGVAVFYSTRRFEKTAEMRVFFPEHAWRLRADSGQFGDGNback to top mRNA from alignment at H-elongata_contig87713:390..2356- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87713.16303.1 ID=mRNA_H-elongata_contig87713.16303.1|Name=mRNA_H-elongata_contig87713.16303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1967bp|location=Sequence derived from alignment at H-elongata_contig87713:390..2356- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87713:390..2356- >mRNA_H-elongata_contig87713.16303.1 ID=mRNA_H-elongata_contig87713.16303.1|Name=mRNA_H-elongata_contig87713.16303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2652bp|location=Sequence derived from alignment at H-elongata_contig87713:390..2356- (Himanthalia elongata Himel1 dioecious)back to top |