mRNA_H-elongata_contig87667.16299.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87667.16299.1
Unique NamemRNA_H-elongata_contig87667.16299.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: A0A293M884_ORNER (Post-GPI attachment to proteins factor 3 (Fragment) n=2 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M884_ORNER)

HSP 1 Score: 65.9 bits (159), Expect = 2.970e-11
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 ERYIFSRPWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPFRR 159
            E+++  RPWYL ++ WDC+ EC+Y CM   +E   S G+ + Q++GKWPF R
Sbjct:   75 EKFLLRRPWYLSVLDWDCLDECRYGCMWHALEFFESVGEPVPQFHGKWPFLR 126
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: A0A1Z5L5V5_ORNMO (Post-GPI attachment to proteins factor 3 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L5V5_ORNMO)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-10
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    4 ERYIFSRPWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPFRR 159
            E ++  RPWYL ++ WDC+ EC+Y CM   +E   S G+ + Q++GKWPF R
Sbjct:   60 ETFLRQRPWYLGVLDWDCLDECRYGCMWHALEFFESVGEPVPQFHGKWPFLR 111
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: A0A6P8INQ5_ACTTE (Post-GPI attachment to proteins factor 3 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8INQ5_ACTTE)

HSP 1 Score: 63.9 bits (154), Expect = 1.230e-10
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 VERYIFSRPWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPF 153
            +E Y    PWYL +  WDC+ ECKYNCM       ++  + ++Q+YGKWPF
Sbjct:   46 IEGYPRDLPWYLRLFSWDCLDECKYNCMHKVTADDVANNRSIKQFYGKWPF 96
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: A0A1L0FSJ8_9ASCO (Post-GPI attachment to proteins factor 3 n=2 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0FSJ8_9ASCO)

HSP 1 Score: 61.6 bits (148), Expect = 9.480e-10
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   25 PWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPFRR 159
            PWYL ++GW+C S C Y C  +  E RI   Q + Q++GKWPFRR
Sbjct:   74 PWYLKLLGWNCRSNCDYQCQQIVTEERIKNNQEVYQFHGKWPFRR 118
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: A0A7R9FRR3_9CRUS (Post-GPI attachment to proteins factor 3 (Fragment) n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9FRR3_9CRUS)

HSP 1 Score: 57.8 bits (138), Expect = 2.220e-8
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 1 
Query:    1 VERYIFSRPWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPF 153
            +E +   + W L++ GW C  EC+Y+CM   V   I  G  + QY+GKWPF
Sbjct:  677 LEEFYKQQGWNLYLFGWGCEDECRYDCMWQRVNAFIRDGTPIPQYHGKWPF 727
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: A0A388JWB3_CHABU (Post-GPI attachment to proteins factor 3 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JWB3_CHABU)

HSP 1 Score: 57.4 bits (137), Expect = 2.970e-8
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   19 SRPWYLWMMGWDCVSECKYNCMTMHVETRIS------AGQRLQQYYGKWPF 153
            + PWYL +  WDC+SECKY CM + VETR           R +QY+GKWPF
Sbjct:   85 TEPWYLPLTQWDCLSECKYQCM-VRVETRKKNEAQSHPPYRAEQYFGKWPF 134
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: UPI001FB0C9AA (post-GPI attachment to proteins factor 3-like isoform X1 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0C9AA)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-7
Identity = 23/50 (46.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   10 YIFSRPWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPFRR 159
            +    P YL    WDC+SEC+YNCM    + R S G    +Y+GKWPF+R
Sbjct:   59 WYLQEPMYLQWKQWDCLSECRYNCMLTLEKKRNSLGGMPVKYHGKWPFQR 108
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: UPI001EE53CB7 (post-GPI attachment to proteins factor 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE53CB7)

HSP 1 Score: 55.1 bits (131), Expect = 1.870e-7
Identity = 19/51 (37.25%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 VERYIFSRPWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPF 153
            V+ ++  +P++L ++ W+C+ ECKY+CM   V+     G  + Q++GKWPF
Sbjct:   45 VDTFLQKQPYHLQLLHWNCIDECKYDCMWSTVDAFGRDGSGVPQFHGKWPF 95
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BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: UPI0015C3638A (uncharacterized protein n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C3638A)

HSP 1 Score: 54.7 bits (130), Expect = 2.600e-7
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   40 MMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPFRR 159
            ++ WDC SEC Y C  +    R+SAGQ + Q++GKWPFRR
Sbjct:   61 LLFWDCPSECDYTCQHIVTAGRVSAGQPVVQFHGKWPFRR 100
[Close]
BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Match: V2WNY8_MONRO (Post-GPI attachment to proteins factor 3 n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=V2WNY8_MONRO)

HSP 1 Score: 54.7 bits (130), Expect = 2.630e-7
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:   25 PWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWPFRR 159
            P  L +  WDC+  CKYNCM       I  G+++ QYYGKWPF R
Sbjct:   50 PLALRLTRWDCIDNCKYNCMHEITSQSIRKGEQIVQYYGKWPFYR 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87667.16299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293M884_ORNER2.970e-1146.15Post-GPI attachment to proteins factor 3 (Fragment... [more]
A0A1Z5L5V5_ORNMO1.010e-1046.15Post-GPI attachment to proteins factor 3 (Fragment... [more]
A0A6P8INQ5_ACTTE1.230e-1045.10Post-GPI attachment to proteins factor 3 n=1 Tax=A... [more]
A0A1L0FSJ8_9ASCO9.480e-1051.11Post-GPI attachment to proteins factor 3 n=2 Tax=[... [more]
A0A7R9FRR3_9CRUS2.220e-841.18Post-GPI attachment to proteins factor 3 (Fragment... [more]
A0A388JWB3_CHABU2.970e-850.98Post-GPI attachment to proteins factor 3 n=1 Tax=C... [more]
UPI001FB0C9AA1.400e-746.00post-GPI attachment to proteins factor 3-like isof... [more]
UPI001EE53CB71.870e-737.25post-GPI attachment to proteins factor 3-like n=1 ... [more]
UPI0015C3638A2.600e-752.50uncharacterized protein n=1 Tax=Geosmithia morbida... [more]
V2WNY8_MONRO2.630e-748.89Post-GPI attachment to proteins factor 3 n=2 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87667contigH-elongata_contig87667:568..726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D8LDA6
Preferred namePGAP3
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016787,GO:0016788,GO:0019538,GO:0019637,GO:0019725,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0090407,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.GPI anchor metabolic process
EggNOG OGsCOG5237@1,KOG2970@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.8833182-CDS-H-elongata_contig87667:567..7261622931277.8833182-CDS-H-elongata_contig87667:567..726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 568..726 +
1691679770.469655-CDS-H-elongata_contig87667:567..7261691679770.469655-CDS-H-elongata_contig87667:567..726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 568..726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87667.16299.1prot_H-elongata_contig87667.16299.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87667 568..726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87667.16299.1

>prot_H-elongata_contig87667.16299.1 ID=prot_H-elongata_contig87667.16299.1|Name=mRNA_H-elongata_contig87667.16299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
VERYIFSRPWYLWMMGWDCVSECKYNCMTMHVETRISAGQRLQQYYGKWP
FRR
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mRNA from alignment at H-elongata_contig87667:568..726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87667.16299.1 ID=mRNA_H-elongata_contig87667.16299.1|Name=mRNA_H-elongata_contig87667.16299.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig87667:568..726+ (Himanthalia elongata Himel1 dioecious)
GTCGAACGGTATATATTTTCGCGACCGTGGTACCTTTGGATGATGGGGTG
GGATTGCGTGTCGGAGTGCAAGTACAACTGCATGACGATGCATGTGGAGA
CGAGGATCTCGGCGGGGCAGCGATTGCAACAGTACTACGGAAAGTGGCCC
TTCAGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig87667:568..726+

>mRNA_H-elongata_contig87667.16299.1 ID=mRNA_H-elongata_contig87667.16299.1|Name=mRNA_H-elongata_contig87667.16299.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig87667:568..726+ (Himanthalia elongata Himel1 dioecious)
GTCGAACGGTATATATTTTCGCGACCGTGGTACCTTTGGATGATGGGGTG
GGATTGCGTGTCGGAGTGCAAGTACAACTGCATGACGATGCATGTGGAGA
CGAGGATCTCGGCGGGGCAGCGATTGCAACAGTACTACGGAAAGTGGCCC
TTCAGGCGAGTCGAACGGTATATATTTTCGCGACCGTGGTACCTTTGGAT
GATGGGGTGGGATTGCGTGTCGGAGTGCAAGTACAACTGCATGACGATGC
ATGTGGAGACGAGGATCTCGGCGGGGCAGCGATTGCAACAGTACTACGGA
AAGTGGCCCTTCAGGCGA
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