mRNA_H-elongata_contig87667.16300.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87667.16300.1
Unique NamemRNA_H-elongata_contig87667.16300.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: D8LDA6_ECTSI (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA6_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 7.700e-54
Identity = 78/97 (80.41%), Postives = 88/97 (90.72%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAGPPRQ 292
            RVWGIQELF+SLFS GNG+PHLYHLL S G+YNPPGNYM FWLT+YPWVG+NTW+WS+VFHARD+ W+EAADYF AL+NIFFVVWVA VR AGPPR 
Sbjct:  256 RVWGIQELFSSLFSAGNGLPHLYHLLLSPGQYNPPGNYMRFWLTVYPWVGMNTWLWSAVFHARDVPWTEAADYFFALMNIFFVVWVAFVRLAGPPRN 352          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A6H5L2L9_9PHAE (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.880e-29
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 2
Query:  116 MCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAGPPRQ 292
            M FWLT+YPWVG+NTW+WS+VFHARD+ W+EAADYF ALLNIFFVVWVA VR AGPPR 
Sbjct:    1 MRFWLTVYPWVGMNTWLWSAVFHARDVPWTEAADYFFALLNIFFVVWVAFVRLAGPPRN 59          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A835ZC47_9STRA (Post-GPI attachment to proteins factor 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC47_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.820e-21
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPP---GNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAG 280
            RVWG+QEL AS+F+  N  PH+Y+L        PP    ++MC  L  Y  +G+N W W+++FHARD +++E ADYF A+L I +++W+ ++R  G
Sbjct:   88 RVWGVQELLASVFAAANLAPHVYYLC------KPPWPLSHFMCTTLQGYSLLGVNAWAWATIFHARDTRFTERADYFSAMLAITYLLWIVVMRLCG 177          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A8H7R3A8_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7R3A8_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 7.420e-18
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
            RV GIQE  + LFS+GNG+ HLY+    R +  P   ++   L LYP VG+N W+WS++FH RD+ W+E  DYF A   + + ++ A++R
Sbjct:   89 RVLGIQEPASVLFSIGNGLVHLYYFFLLRKKI-PTNYHLKTSLLLYPCVGMNAWLWSTIFHGRDVHWTELMDYFSAFSLVLYSLFFALIR 177          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A6S7J8V3_PARCT (Post-GPI attachment to proteins factor 3 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J8V3_PARCT)

HSP 1 Score: 80.1 bits (196), Expect = 8.320e-16
Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAG 280
            R+ GIQE  +  FSVGNG+ H +     +   NP  +    W  LY W+ +N W+WS+VFH RDL W+E  DYF A+  I   ++   VRT G
Sbjct:  100 RLLGIQEPASVFFSVGNGLGHYFGWKMYKNHVNPNYSMYNTW-KLYYWISVNAWLWSTVFHTRDLVWTERLDYFGAVSLILASIYSYFVRTVG 191          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: J5QMT9_TRIAS (Post-GPI attachment to proteins factor 3 n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5QMT9_TRIAS)

HSP 1 Score: 80.5 bits (197), Expect = 8.420e-16
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
            RV G+QE F+ LFS+GN   H   L     R  P  N +  WL    W+ +NTW+WSSVFH RD+ W+E  DYF A++ + F++  A++R
Sbjct:  100 RVLGVQEPFSVLFSLGNLWVHWKGLKMLEKRV-PDSNALKPWLKAAAWIQMNTWLWSSVFHTRDVPWTEKLDYFSAMITVAFMLLYALLR 188          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A137NRV0_CONC2 (Post-GPI attachment to proteins factor 3 (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NRV0_CONC2)

HSP 1 Score: 79.7 bits (195), Expect = 1.170e-15
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYN--PPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
            RV+GIQE+F+ +FS+GNG  H  H    R + N  P   Y+  +L  Y  V INTWIWS+VFH RD++ +E  DYF AL ++ F +    +R
Sbjct:   88 RVFGIQEIFSVIFSIGNGYAHYVH----RSKLNRLPNNFYLINYLKGYNLVTINTWIWSTVFHCRDVRITERLDYFSALASVQFALHYCFLR 175          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: UPI00106B3D83 (post-GPI attachment to proteins factor 3-like isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B3D83)

HSP 1 Score: 79.7 bits (195), Expect = 1.490e-15
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVRTAGP 283
            R++GIQE  + LFS+GNG+ H +     +   NP  +    W  LY  + +N W+WS+VFH RDL W+E  DYF A+  I   ++ + VR  GP
Sbjct:  131 RLFGIQEPASVLFSIGNGLGHYFGWKMFKNHVNPHYSMYSTW-KLYYIISVNAWLWSAVFHTRDLTWTERLDYFGAVSLILASIYSSFVRIVGP 223          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A8H7SCW3_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SCW3_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
            R+WGIQE  + LFS+GNG  H Y+    R R  P   Y+  ++ ++  VGIN WIWS+VFH+RD   +E  DYF A L I + ++  ++R
Sbjct:   94 RLWGIQEPASVLFSIGNGYVHYYYFGILR-RDIPNAYYLKPFMLMFSLVGINAWIWSTVFHSRDFPLTEKLDYFSAGLFILYSLYYGVIR 182          
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Match: A0A0B7NDV7_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NDV7_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 7.970e-15
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 RVWGIQELFASLFSVGNGVPHLYHLLFSRGRYNPPGNYMCFWLTLYPWVGINTWIWSSVFHARDLKWSEAADYFCALLNIFFVVWVAIVR 271
            R +GIQE  + LFS+GNG+ H Y+    +   +    Y  F L LY  +G+N W+WS+VFH+RD K++E  DYF A L + + ++ AI+R
Sbjct:   26 RCFGIQEPASVLFSIGNGLVHAYYFRQIQKHVSWRNFYKGFML-LYTVIGMNAWLWSTVFHSRDTKFTELMDYFSAALLVLYSLYYAIIR 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87667.16300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDA6_ECTSI7.700e-5480.41Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
A0A6H5L2L9_9PHAE2.880e-2979.66Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
A0A835ZC47_9STRA4.820e-2142.71Post-GPI attachment to proteins factor 3 n=1 Tax=T... [more]
A0A8H7R3A8_9FUNG7.420e-1843.33Post-GPI attachment to proteins factor 3 n=1 Tax=M... [more]
A0A6S7J8V3_PARCT8.320e-1641.94Post-GPI attachment to proteins factor 3 n=2 Tax=P... [more]
J5QMT9_TRIAS8.420e-1643.33Post-GPI attachment to proteins factor 3 n=2 Tax=T... [more]
A0A137NRV0_CONC21.170e-1544.57Post-GPI attachment to proteins factor 3 (Fragment... [more]
UPI00106B3D831.490e-1540.43post-GPI attachment to proteins factor 3-like isof... [more]
A0A8H7SCW3_9FUNG2.210e-1543.33Post-GPI attachment to proteins factor 3 n=1 Tax=M... [more]
A0A0B7NDV7_9FUNG7.970e-1542.22Post-GPI attachment to proteins factor 3 n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87667contigH-elongata_contig87667:1502..2476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size295
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87667.16300.1prot_H-elongata_contig87667.16300.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87667 1508..2476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.7844243-UTR-H-elongata_contig87667:1501..15071622931277.7844243-UTR-H-elongata_contig87667:1501..1507Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87667 1502..1507 +
1691679770.4190893-UTR-H-elongata_contig87667:1501..15071691679770.4190893-UTR-H-elongata_contig87667:1501..1507Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87667 1502..1507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.8033285-CDS-H-elongata_contig87667:1507..15901622931277.8033285-CDS-H-elongata_contig87667:1507..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 1508..1590 +
1691679770.4284616-CDS-H-elongata_contig87667:1507..15901691679770.4284616-CDS-H-elongata_contig87667:1507..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 1508..1590 +
1622931277.829385-CDS-H-elongata_contig87667:1971..21161622931277.829385-CDS-H-elongata_contig87667:1971..2116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 1972..2116 +
1691679770.4377263-CDS-H-elongata_contig87667:1971..21161691679770.4377263-CDS-H-elongata_contig87667:1971..2116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 1972..2116 +
1622931277.8437362-CDS-H-elongata_contig87667:2416..24761622931277.8437362-CDS-H-elongata_contig87667:2416..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 2417..2476 +
1691679770.4558823-CDS-H-elongata_contig87667:2416..24761691679770.4558823-CDS-H-elongata_contig87667:2416..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87667 2417..2476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87667.16300.1

>prot_H-elongata_contig87667.16300.1 ID=prot_H-elongata_contig87667.16300.1|Name=mRNA_H-elongata_contig87667.16300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MGHPRAVRLAFLRRERRPTPVPPPLLSRAVQPSRELHVLLAHPLPLGGNQ
HLDLVERVSRERFEVVGSGGLLLRVAEHIFRRLGGDRSDGGAASAT
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mRNA from alignment at H-elongata_contig87667:1502..2476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87667.16300.1 ID=mRNA_H-elongata_contig87667.16300.1|Name=mRNA_H-elongata_contig87667.16300.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig87667:1502..2476+ (Himanthalia elongata Himel1 dioecious)
ACGAGTATGGGGCATCCAAGAGCTGTTCGCCTCGCTTTTCTCCGTCGGGA ACGGCGTCCCACACCTGTACCACCTCCTCTTCTCTCGAGGTCTGTGTGGC GTGTTCCCGCGAGGGCGCCCCTCTCCTCAACCATTTGTTGGTCGTCGTTC TGTATAGTTCGATTCCGTTGGAGAGATAGGCGTCGTTTTCGTGCGGTCTT CGTTCGACGAGGTGCCGCTCCGGGCCTCGCCACCGGCCGGCCGGGGGGCG GCGATGAGCGCCTCGTTGCGCGCAAAATTCGACTACATCTAGACTGATCG TTTCGGCCGACCACAGTGTGGCACCAAGATATTGGAGTTCGGTTGACCCG GCGCAGTACGTCATTATTACTTTTACTGAACTTGGGTCCCCTCCCCCTCG GCCTCTCCTCCCTTTCTGCCGCGCGCGTCAATCAATTCCCGTTGTGCTGT GACGTCACATTCTCTGTTAGGGCGGTACAACCCTCCCGGGAATTACATGT GCTTTTGGCTCACCCTCTACCCCTGGGTGGGAATCAACACCTGGATTTGG TCGAGCGTGTTTCACGCGAGAGATTTGAAGTGGTCGGAAGCGGCGGATTA CTTTTGCGCGTTGCTGTGAGTGCTGGGGCGCGCGGGCTACGGCCATCTAG GGAGATCTTCGCTTCCCCCTCCCTTGTCTCTTGCCTCTCTACATTTGTCT CTGGATCTCTAAAAATGTTGTACCGTCCGTTCTACATACGGTGCATATTT TCTGGCATCTAACGATACTTTCGTGCGAAGGAATGTTTGAAAACCCTGTG TAGGCGTGTGCCTTGCGGGAGGAAATATCGTCGATGGTGGTATCGCGCGC GGCCGCGCACCCGCTCCAACACCTCCCCTCCCCTCCCCGTGTCCGCTACT GCCCCCAACCTCCAGGAACATATTTTTCGTCGTCTGGGTGGCGATCGTTC GGACGGCGGGGCCGCCTCGGCAACG
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Coding sequence (CDS) from alignment at H-elongata_contig87667:1502..2476+

>mRNA_H-elongata_contig87667.16300.1 ID=mRNA_H-elongata_contig87667.16300.1|Name=mRNA_H-elongata_contig87667.16300.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig87667:1502..2476+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCATCCAAGAGCTGTTCGCCTCGCTTTTCTCCGTCGGGAACGGCG
TCCCACACCTGTACCACCTCCTCTTCTCTCGAGATGGGGCATCCAAGAGC
TGTTCGCCTCGCTTTTCTCCGTCGGGAACGGCGTCCCACACCTGTACCAC
CTCCTCTTCTCTCGAGGGCGGTACAACCCTCCCGGGAATTACATGTGCTT
TTGGCTCACCCTCTACCCCTGGGTGGGAATCAACACCTGGATTTGGTCGA
GCGTGTTTCACGCGAGAGATTTGAAGTGGTCGGAAGCGGCGGATTACTTT
TGCGCGTTGCTGGCGGTACAACCCTCCCGGGAATTACATGTGCTTTTGGC
TCACCCTCTACCCCTGGGTGGGAATCAACACCTGGATTTGGTCGAGCGTG
TTTCACGCGAGAGATTTGAAGTGGTCGGAAGCGGCGGATTACTTTTGCGC
GTTGCTGAACATATTTTTCGTCGTCTGGGTGGCGATCGTTCGGACGGCGG
GGCCGCCTCGGCAACGGAACATATTTTTCGTCGTCTGGGTGGCGATCGTT
CGGACGGCGGGGCCGCCTCGGCAACG
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