mRNA_H-elongata_contig8763.16297.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8763.16297.1
Unique NamemRNA_H-elongata_contig8763.16297.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: D8LBC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC4_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 4.200e-55
Identity = 106/157 (67.52%), Postives = 120/157 (76.43%), Query Frame = 1
Query:  382 RRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGT---LSIDEPSGEERPEGSK-----SRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            +RRLGEPKRAL  LRRAA++G  S  S E+LEVTHLNACAVLSELGRHEEALEHARSAV+H QE E  GT   ++ +    +E    S      SR ARLATLAVSYYNLAVELEYTHRYEA L WY EAV+LA D D+ NEEL+KTFQR++ GARK
Sbjct:   25 QRRLGEPKRALRCLRRAAELGRRSCGS-EHLEVTHLNACAVLSELGRHEEALEHARSAVYHGQELEGAGTHAGVAAETGRNQEGRASSSAGVGGSRKARLATLAVSYYNLAVELEYTHRYEACLRWYGEAVQLARDQDVHNEELLKTFQRSFAGARK 180          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: A0A2P4XJ43_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4XJ43_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.890e-41
Identity = 95/247 (38.46%), Postives = 153/247 (61.94%), Query Frame = 1
Query:  109 LKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGTLSI----DEPSGEERPEGS---KSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            LK RMFG +NS+  +AL + +++ NS+AM  L +G   +C  +L +A  +T+   ++            RC +     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G + S   +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE  E+ +L      DE + + + + +    +R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L ++F++ ++ A+K
Sbjct:   28 LKRRMFGVDNSVVHKALNEVMLSYNSMAMQYLAQGQFDQCLAMLRKAEAITAPGNFK------------RCQA-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQIG-SGSAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQE--ELVSLEDGGERDEDNSDNKDQDALDPTTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYRETNEALCESFKKIFLDAKK 253          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: K3WL64_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL64_GLOUD)

HSP 1 Score: 153 bits (386), Expect = 1.750e-40
Identity = 103/289 (35.64%), Postives = 165/289 (57.09%), Query Frame = 1
Query:    1 NDFEVLQLLEETLKKCSATGRRPSTAHVDLLERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGTLSI----DEPSGEERPEGS---------KSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            +D  +L++L  T+       +      +  LE+   LK RMFG +NS+ RRAL + +++ NS+AM  L +    +C  +L +A  +T+   ++            +C S     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G ++    +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE  E+ ++      DE   +E   G+         KSR  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       N  L  +F++ ++ A+K
Sbjct:    3 SDQSLLEMLSSTV--ACLKQKNMDLEALGCLEQSLWLKRRMFGVDNSVVRRALHEVVLSYNSVAMQYLAQAQFDQCLAMLRKAEAITAPGNFK------------KCQS-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQIG-STCAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQE--ELVSMDAKGHQDERDEDEDYSGTGETTDLLDAKSREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYKDTNSALCDSFKKIFMDAKK 268          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: A0A662XMZ8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMZ8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.120e-40
Identity = 99/263 (37.64%), Postives = 158/263 (60.08%), Query Frame = 1
Query:   91 LERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGTLSIDEPSGEERPE-----------------GSKSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            LE+   LK RMFG +NS+  RAL + +++ NS+AM  L +G   +C  +L +A  +T+   ++            +C +     L+ILTFNN+ C +R+ L + K AL  L+ AA +G +SS   +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE      +S+++ +G++R E                  +K+R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L ++F++ ++ ARK
Sbjct:  103 LEQSLWLKRRMFGVDNSVVHRALNEVMLSYNSVAMQYLSQGQFDQCLAMLRKAEAITAPGNFK------------KCQA-----LQILTFNNIGCCYRK-LSKLKSALKYLKEAAQLG-SSSAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQE----ELVSLEDRAGDDREEEAAESESGEQAGLMDALDAKTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYRETNEALCESFKKIFLDARK 342          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: A0A662XH76_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XH76_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.770e-39
Identity = 101/261 (38.70%), Postives = 157/261 (60.15%), Query Frame = 1
Query:   91 LERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGTLS--IDEPSGEERPEG-------------SKSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            LE+   LK RMFG +NS+  +AL + +++ NS+AM  L +G   +C  +L +A  +T+   +R            +C +     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G + ST  +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE  E+ +L    D+   EE  E              +K+R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L ++F++ ++ A+K
Sbjct:  712 LEQSLWLKRRMFGVDNSVVHKALNEVMLSYNSVAMQYLSQGQFDQCLAMLRKAEAVTAPGNFR------------KCQA-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQLG-SGSTHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQE--ELVSLEDRADDDREEEAAESEGGEQAGLMDALDAKTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYRETNEALCESFKKIFLDAKK 951          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: G4Z6V2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6V2_PHYSP)

HSP 1 Score: 155 bits (392), Expect = 2.730e-39
Identity = 100/260 (38.46%), Postives = 156/260 (60.00%), Query Frame = 1
Query:   91 LERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQE----CEEIGTLSIDEPS---GEERPEGS-------KSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            LE+   LK RMFG +NS+  +AL + +++ NS+AM  L +G   +C  +L +A  +T+   ++            RC +     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G + S   +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE     E+      DE     G+ER + +       K+R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L ++F++ ++ A+K
Sbjct:   22 LEQSLWLKRRMFGVDNSVVHKALNEVMLSYNSVAMQYLSQGQFDQCLAMLRKAEAITAPGNFK------------RCQA-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQIG-SGSAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQEELVSLEDGAMNERDEDGKCDGDERDQTALVDALDPKTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYRETNEALCESFKKIFLDAKK 262          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: A0A6A4G548_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G548_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.370e-39
Identity = 96/247 (38.87%), Postives = 147/247 (59.51%), Query Frame = 1
Query:   91 LERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQE---CEEIGTLSIDEPSGE----ERPEGS-------KSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEEL 789
            LE+   LK RMFG +NS+  +AL + +++ NS+AM  L +G   +C  +L +A  +T+   ++            RC +     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G + S   +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE     E G ++  +  GE    +R + +       K+R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L
Sbjct:   22 LEQSLWLKRRMFGVDNSVVHKALNEVMLSYNSVAMQYLAQGQFDQCLAMLRKAEAITAPGNFK------------RCQA-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQIG-SGSAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQEELVSLEDGAMNERDEDGECDGDDRDQAALVDALDPKTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYRETNEAL 249          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: A0A6A3ZRF6_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZRF6_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.050e-39
Identity = 99/260 (38.08%), Postives = 156/260 (60.00%), Query Frame = 1
Query:   91 LERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQE----CEEIGTLSIDEPS---GEERPEGS-------KSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            LE+   LK RMFG +NS+  +AL + +++ NS+AM  L +G   +C  +L +A  +T+   ++            RC +     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G + S   +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE     E+      DE     G++R + +       K+R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L ++F++ ++ A+K
Sbjct:   22 LEQSLWLKRRMFGVDNSVVHKALNEVMLSYNSVAMQYLAQGQFDQCLAMLRKAEAITAPGNFK------------RCQA-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQIG-SGSAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQEELVSLEDEAMNERDEDGECDGDDRDQAALVDALDPKTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYRETNEALCESFKKIFLDAKK 262          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: A0A0W8CMP5_PHYNI (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CMP5_PHYNI)

HSP 1 Score: 154 bits (390), Expect = 4.350e-39
Identity = 100/279 (35.84%), Postives = 165/279 (59.14%), Query Frame = 1
Query:    1 NDFEVLQLLEETLKKCSATGRRPSTAHVDLLERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGTL---SIDEPSGEERPEGSKSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            +D  +L++L  T+       ++     +  LE+   LK RMFG ++S   +AL + +++ NS+AM  L +G   +C  +L +A  + +   ++            RC +     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G + S   +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE  E+ +L   + DE   ++     K+R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L ++F++ ++ A+K
Sbjct:   53 SDQSLLEMLNSTV--ACLKQKKMDLEALGCLEQSLWLKRRMFGVDSSAVYKALNEVMLSYNSVAMQYLAQGQFDQCLAMLRKAEAIVAPGNFK------------RCQA-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQIG-SGSAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQE--ELVSLEDGARDEDDRDQDALDPKTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYKETNEALCESFKKIFLDAKK 308          
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Match: A0A8J5IVD3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IVD3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 5.350e-39
Identity = 96/248 (38.71%), Postives = 152/248 (61.29%), Query Frame = 1
Query:   91 LERRAALKTRMFGPENSMTRRALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRASYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWNSSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGTL--SIDEPSGEERPEGSKSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAVKLACDPDMRNEELVKTFQRAYVGARK 828
            LE+   LK RMFG ++S   +AL + +++ NS+AM  L +G   +C  +L +A  + +   ++            RC +     L+ILTFNN+ C +R+ LG+ K AL  L+ AA +G + S   +NL +THLN CA+ S+LGRH+ ALEHA++A+FH QE E +G    + DE   ++     K+R  ++ +LAV+Y+NLAVELE+  R EASL WY++A++L       NE L ++F++ ++ A+K
Sbjct:   74 LEQSLWLKRRMFGVDSSAVLKALNEVMLSYNSVAMQYLAQGQFDQCLAMLRKAEAIVAPGNFK------------RCQA-----LQILTFNNIGCCYRK-LGKLKSALKYLKEAAQIG-SGSAHVKNLSITHLNLCAIQSQLGRHDLALEHAQAAIFHTQE-ELVGLEDGARDEDDSDQDALDPKTREEKIISLAVAYHNLAVELEFNGRGEASLQWYKKALQLVWKYRESNEALCESFKKIFLDAKK 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8763.16297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC4_ECTSI4.200e-5567.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2P4XJ43_9STRA4.890e-4138.46Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
K3WL64_GLOUD1.750e-4035.64Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662XMZ8_9STRA6.120e-4037.64Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XH76_9STRA1.770e-3938.70Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
G4Z6V2_PHYSP2.730e-3938.46Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A4G548_9STRA3.370e-3938.87Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3ZRF6_9STRA4.050e-3938.08Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A0W8CMP5_PHYNI4.350e-3935.84Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A8J5IVD3_9STRA5.350e-3938.71Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8763contigH-elongata_contig8763:1631..4321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue6.1e-45
Seed eggNOG ortholog2880.D8LBC4
EggNOG OGs28ZWJ@1,2RXXZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size828
Cds size828
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8763.16297.1prot_H-elongata_contig8763.16297.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8763 1631..4321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.473622-CDS-H-elongata_contig8763:1630..17081622931277.473622-CDS-H-elongata_contig8763:1630..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 1631..1708 +
1691679770.2539175-CDS-H-elongata_contig8763:1630..17081691679770.2539175-CDS-H-elongata_contig8763:1630..1708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 1631..1708 +
1622931277.4898052-CDS-H-elongata_contig8763:2171..22281622931277.4898052-CDS-H-elongata_contig8763:2171..2228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 2172..2228 +
1691679770.2749736-CDS-H-elongata_contig8763:2171..22281691679770.2749736-CDS-H-elongata_contig8763:2171..2228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 2172..2228 +
1622931277.5067985-CDS-H-elongata_contig8763:2549..28001622931277.5067985-CDS-H-elongata_contig8763:2549..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 2550..2800 +
1691679770.2850196-CDS-H-elongata_contig8763:2549..28001691679770.2850196-CDS-H-elongata_contig8763:2549..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 2550..2800 +
1622931277.5204546-CDS-H-elongata_contig8763:3282..34171622931277.5204546-CDS-H-elongata_contig8763:3282..3417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 3283..3417 +
1691679770.2936876-CDS-H-elongata_contig8763:3282..34171691679770.2936876-CDS-H-elongata_contig8763:3282..3417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 3283..3417 +
1622931277.5344696-CDS-H-elongata_contig8763:3623..38361622931277.5344696-CDS-H-elongata_contig8763:3623..3836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 3624..3836 +
1691679770.3084235-CDS-H-elongata_contig8763:3623..38361691679770.3084235-CDS-H-elongata_contig8763:3623..3836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 3624..3836 +
1622931277.5522187-CDS-H-elongata_contig8763:4227..43211622931277.5522187-CDS-H-elongata_contig8763:4227..4321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 4228..4321 +
1691679770.3206625-CDS-H-elongata_contig8763:4227..43211691679770.3206625-CDS-H-elongata_contig8763:4227..4321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8763 4228..4321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8763.16297.1

>prot_H-elongata_contig8763.16297.1 ID=prot_H-elongata_contig8763.16297.1|Name=mRNA_H-elongata_contig8763.16297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=276bp
NDFEVLQLLEETLKKCSATGRRPSTAHVDLLERRAALKTRMFGPENSMTR
RALKDTIVACNSLAMFALGRGDTSRCDELLVRALEMTSSAKWRDKDSDRA
SYGSERCASGGIPSLEILTFNNMACLHRRRLGEPKRALHLLRRAADVGWN
SSTSFENLEVTHLNACAVLSELGRHEEALEHARSAVFHAQECEEIGTLSI
DEPSGEERPEGSKSRCARLATLAVSYYNLAVELEYTHRYEASLCWYREAV
KLACDPDMRNEELVKTFQRAYVGARK
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mRNA from alignment at H-elongata_contig8763:1631..4321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8763.16297.1 ID=mRNA_H-elongata_contig8763.16297.1|Name=mRNA_H-elongata_contig8763.16297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2691bp|location=Sequence derived from alignment at H-elongata_contig8763:1631..4321+ (Himanthalia elongata Himel1 dioecious)
AATGATTTCGAAGTGCTGCAATTGCTTGAGGAAACCTTGAAGAAGTGCTC GGCTACAGGTCGACGACCTTCTACCGCGGTGAGAGAGGGATTGACGTACT TGTACTTGTATCCATATATTATTTAAAGCTCTGAAATCATTCAAATCTTC CGAACATCAACACCTTCTTTAACCGGGTTCGGTAAAATCCATTGGACCAA CTCTCGTCAGGTTCTAGTGATTTGTACAGTACAAAATATATTCGGATCAC CGAGGTTTAAGTTCTTCCCGTTTAGCTTATTTTTTAAGGCGTTTCTTGGC CACAAATTGAACTCTAAGTTACTATAAAACTGGCTGATCTTCTTGGACAA AGGAATTTCGATCTGCGCGCATCACTCTAGCCTAGATATAAAAGCGGCGA GAGACAAACCGTTAGCGTTGGACCGCTGAATAATGCATTCTGAAAGTAGT AGTCATAGACAAGGCGGTCCTCGCCAACATGATGTATTGTCGCACCGAGT TCATACGTTGTATCTTCTCCTGATTTCACACCACGCCACAGCATGTTGAC CTCTTGGAGCGGAGAGCAGCGTTGAAGACGCGAATGTTCGGACCCGAGGT GCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC TCTGAATTTGAAATGTTCTCGACAAGGAGTATATTCTTTATAAATCAACT GGTTGTGACTGAGCAATGTCTTCCCTGGTAATAGAGAATGTAAGGCGATA TCATACTGGCCCAACACTATCAGCGAGAAAATGTTTCCACTCTACTCCTG ATGCTCCAAATGCTTGCTCTCGTGCCCCTTCCATGTCCCCTCACCATCGG GGAAATTCATCGAATATCAAAATATATATATATCCTTTCTTGCACACACA CGCGGACTTATCATTATAGAATTCGATGACTAGGAGAGCTTTGAAAGACA CCATTGTGGCCTGCAACTCCCTCGCCATGTTCGCACTTGGCCGTGGTGAT ACGTCCCGCTGTGATGAACTCCTCGTACGAGCGCTGGAAATGACGAGCAG TGCAAAGTGGCGAGACAAAGATAGCGACCGCGCGTCATATGGAAGTGAAA GATGCGCAAGCGGTGGCATCCCTTCACTAGAGATTTTGACGTTCAATAAT ATGGCATGCTTGCATCGAAGGTGACCGACGCCGTATCCTACACGCGCATT GGCGGTGCTGATATGCCTATACGGCCAATCGAGAGTGGTTTTACTTCCTA GTGCGTTGTGGCCACAGGGCGCAGGTCATTGGGCACGCGATCCCCCAAAG TGTGCATATGAATGTCCAATGAAGATAACCATTAATTTGCTGTTCGAAAT GAGACCGGCAGCAAGAGGCTTTCACGCAATCGATGAAATGATAATGTTCT TTTGGCGACCCTGTCAGAGAAGCGAATGTATTTTCAAGCCGCGAGAAAAC TACATACATATCTCCTCCTTGAGCCAACTCACGGAAGCACACGACACCTG AACATTAAGTTGCGTTCCGCCATCCACCATGTGAGGCGCTTCCTCCGGTG AGTATTATCACTGTCATTTGTTTTGCTTTGTTTCTTGTACTGTACGAGTT TGTGCCTCCTTTAAATCTTCACACGTCGTGATTTTGACGACATCGGTGGG AGAAGGCTTGGTGAACCTAAGCGAGCTTTACACTTGTTGCGCCGGGCTGC TGACGTGGGATGGAATTCTAGCACCAGCTTCGAGAACCTCGAAGTGACGC ATCTCAACGCCTGCGCGGTGCTGTCGGAGCTAGGCCGGTGAGGTTACTAC CGGAGTAAAATCGCGCTGAAGTTGGCGAAGATACAATATATTTACTCCAA TGATGTATTTAATGCATCTGTGGATTTCCTTGTTCTCTGTATTTCCAAGC ACACAAGCCGCTTTGACAGGCTCAAAGCACGCGAGGCTTGTATTACGATT CCACACAACGCTACCGCGCCGTCGCCGTCGACGTGAGGTACAGGCACGAA GAAGCGCTCGAGCACGCGAGATCTGCTGTTTTTCATGCACAAGAGTGTGA GGAAATAGGAACATTGTCAATCGATGAGCCTTCCGGCGAGGAGCGACCTG AGGGAAGTAAAAGCAGGTGCGCGCGCCTGGCAACGCTCGCGGTGTCGTAC TACAACTTGGCTGTGGAGCTGGAGTACACCCACCGCTACGAAGCGTCCCT TTGCTGGTGGGTTCCTCGACTTCATCAGGGAGGTATTGATTCTACATCAG AGATTTATGCAATGTCGTAACAAGCTTCATCAGCACTCGGTGTGTCTGGG CTCCTGCCGTCTATGGAAAAAAAATATATATATATGAACAGGGAGGCTTA AAAGACGTTCGATATAAAGAACAGCGCCTGGCCTTCAACAAAAAACTAAT TCGACAAAAGCAAAACGTAGCGGTGACCTTTACGACTTCACGAGTCAAGA GGTGTCACGATTGCATTTAAGACTACTTCAATGGCGCTTTGCGTAACAAT GGTAGGACTGATCACAGTAAACACATCATCACGTGGTTCGGTGCGGGAAA TACATTCCCGTAGCGCTAAAAAACGTCCAATGCTCGGATGTCTACAGGTA TCGCGAGGCGGTGAAGCTGGCGTGTGATCCGGACATGCGAAACGAGGAGC TCGTTAAGACCTTCCAGCGAGCGTACGTCGGCGCTCGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig8763:1631..4321+

>mRNA_H-elongata_contig8763.16297.1 ID=mRNA_H-elongata_contig8763.16297.1|Name=mRNA_H-elongata_contig8763.16297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1656bp|location=Sequence derived from alignment at H-elongata_contig8763:1631..4321+ (Himanthalia elongata Himel1 dioecious)
AATGATTTCGAAGTGCTGCAATTGCTTGAGGAAACCTTGAAGAAGTGCTC
GGCTACAGGTCGACGACCTTCTACCGCGAATGATTTCGAAGTGCTGCAAT
TGCTTGAGGAAACCTTGAAGAAGTGCTCGGCTACAGGTCGACGACCTTCT
ACCGCGCATGTTGACCTCTTGGAGCGGAGAGCAGCGTTGAAGACGCGAAT
GTTCGGACCCGAGCATGTTGACCTCTTGGAGCGGAGAGCAGCGTTGAAGA
CGCGAATGTTCGGACCCGAGAATTCGATGACTAGGAGAGCTTTGAAAGAC
ACCATTGTGGCCTGCAACTCCCTCGCCATGTTCGCACTTGGCCGTGGTGA
TACGTCCCGCTGTGATGAACTCCTCGTACGAGCGCTGGAAATGACGAGCA
GTGCAAAGTGGCGAGACAAAGATAGCGACCGCGCGTCATATGGAAGTGAA
AGATGCGCAAGCGGTGGCATCCCTTCACTAGAGATTTTGACGTTCAATAA
TATGGCATGCTTGCATCGAAGAATTCGATGACTAGGAGAGCTTTGAAAGA
CACCATTGTGGCCTGCAACTCCCTCGCCATGTTCGCACTTGGCCGTGGTG
ATACGTCCCGCTGTGATGAACTCCTCGTACGAGCGCTGGAAATGACGAGC
AGTGCAAAGTGGCGAGACAAAGATAGCGACCGCGCGTCATATGGAAGTGA
AAGATGCGCAAGCGGTGGCATCCCTTCACTAGAGATTTTGACGTTCAATA
ATATGGCATGCTTGCATCGAAGAAGGCTTGGTGAACCTAAGCGAGCTTTA
CACTTGTTGCGCCGGGCTGCTGACGTGGGATGGAATTCTAGCACCAGCTT
CGAGAACCTCGAAGTGACGCATCTCAACGCCTGCGCGGTGCTGTCGGAGC
TAGGCCGAAGGCTTGGTGAACCTAAGCGAGCTTTACACTTGTTGCGCCGG
GCTGCTGACGTGGGATGGAATTCTAGCACCAGCTTCGAGAACCTCGAAGT
GACGCATCTCAACGCCTGCGCGGTGCTGTCGGAGCTAGGCCGGCACGAAG
AAGCGCTCGAGCACGCGAGATCTGCTGTTTTTCATGCACAAGAGTGTGAG
GAAATAGGAACATTGTCAATCGATGAGCCTTCCGGCGAGGAGCGACCTGA
GGGAAGTAAAAGCAGGTGCGCGCGCCTGGCAACGCTCGCGGTGTCGTACT
ACAACTTGGCTGTGGAGCTGGAGTACACCCACCGCTACGAAGCGTCCCTT
TGCTGGCACGAAGAAGCGCTCGAGCACGCGAGATCTGCTGTTTTTCATGC
ACAAGAGTGTGAGGAAATAGGAACATTGTCAATCGATGAGCCTTCCGGCG
AGGAGCGACCTGAGGGAAGTAAAAGCAGGTGCGCGCGCCTGGCAACGCTC
GCGGTGTCGTACTACAACTTGGCTGTGGAGCTGGAGTACACCCACCGCTA
CGAAGCGTCCCTTTGCTGGTATCGCGAGGCGGTGAAGCTGGCGTGTGATC
CGGACATGCGAAACGAGGAGCTCGTTAAGACCTTCCAGCGAGCGTACGTC
GGCGCTCGAAAGGTATCGCGAGGCGGTGAAGCTGGCGTGTGATCCGGACA
TGCGAAACGAGGAGCTCGTTAAGACCTTCCAGCGAGCGTACGTCGGCGCT
CGAAAG
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